9WAI | pdb_00009wai

Yeast-expressed polio type 1 stablized virus-like particles with 3G10 Fab


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
B [auth C]SCOP2B SuperfamilyPositive stranded ssRNA viruses-like 8036553 3000918 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
B [auth C]RVPe9waiC1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: RVPECOD (v294.2)

SAbDab Antibody Annotation SAbDab Database Homepage

ChainChain ClassChain SubclassChain TypeAntigen Name(s) Provenance Source
D [auth E]Heavy ChainIGHV7 -capsid protein vp1 | capsid protein vp2SAbDab (2026-06-12)
E [auth F]Light ChainIGKV6 Kappacapsid protein vp1 | capsid protein vp2SAbDab (2026-06-12)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth D]PF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain
B [auth C]PF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain
C [auth B]PF00073picornavirus capsid protein (Rhv)picornavirus capsid proteinCAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornavi ...CAUTION: This alignment is very weak. It can not be generated by clustalw. If a representative set is used for a seed, many so-called members are not recognised. The family should probably be split up into sub-families. Capsid proteins of picornaviruses. Picornaviruses are non-enveloped plus-strand ssRNA animal viruses with icosahedral capsids. They include rhinovirus (common cold) and poliovirus. Common structure is an 8-stranded beta sandwich. Variations (one or two extra strands) occur.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth D]Capsid protein VP1
B [auth C]Capsid protein VP3
C [auth B]Capsid protein VP2
D [auth E]heavy chain---
E [auth F]light chain---
F [auth A]Capsid protein VP4

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth D]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
A [auth D]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
A [auth D]IPR003138Picornavirus coat protein VP4Family
A [auth D]IPR000199Peptidase C3A/C3B, picornaviralDomain
A [auth D]IPR001676Picornavirus capsidDomain
A [auth D]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
A [auth D]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
A [auth D]IPR000081Peptidase C3, picornavirus core protein 2ADomain
A [auth D]IPR043504Peptidase_S1_PA_chymotrypsinUnknown
A [auth D]IPR029053Viral coat protein subunitHomologous Superfamily
A [auth D]IPR009003Peptidase S1, PA clanHomologous Superfamily
A [auth D]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
A [auth D]IPR044067Picornavirales 3C/3C-like protease domainDomain
A [auth D]IPR033703Picornavirus/Calicivirus coat proteinDomain
A [auth D]IPR0025272B protein, picornavirusDomain
A [auth D]IPR014838Poliovirus 3A protein-likeDomain
A [auth D]IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
A [auth D]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
A [auth D]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
B [auth C]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
B [auth C]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
B [auth C]IPR003138Picornavirus coat protein VP4Family
B [auth C]IPR000199Peptidase C3A/C3B, picornaviralDomain
B [auth C]IPR001676Picornavirus capsidDomain
B [auth C]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
B [auth C]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
B [auth C]IPR000081Peptidase C3, picornavirus core protein 2ADomain
B [auth C]IPR043504Peptidase_S1_PA_chymotrypsinUnknown
B [auth C]IPR029053Viral coat protein subunitHomologous Superfamily
B [auth C]IPR009003Peptidase S1, PA clanHomologous Superfamily
B [auth C]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
B [auth C]IPR044067Picornavirales 3C/3C-like protease domainDomain
B [auth C]IPR033703Picornavirus/Calicivirus coat proteinDomain
B [auth C]IPR0025272B protein, picornavirusDomain
B [auth C]IPR014838Poliovirus 3A protein-likeDomain
B [auth C]IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
B [auth C]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
B [auth C]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
C [auth B]IPR001205RNA-directed RNA polymerase, C-terminal domainDomain
C [auth B]IPR043128Reverse transcriptase/Diguanylate cyclase domainHomologous Superfamily
C [auth B]IPR003138Picornavirus coat protein VP4Family
C [auth B]IPR000199Peptidase C3A/C3B, picornaviralDomain
C [auth B]IPR001676Picornavirus capsidDomain
C [auth B]IPR014759Helicase, superfamily 3, single-stranded RNA virusDomain
C [auth B]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
C [auth B]IPR000081Peptidase C3, picornavirus core protein 2ADomain
C [auth B]IPR043504Peptidase_S1_PA_chymotrypsinUnknown
C [auth B]IPR029053Viral coat protein subunitHomologous Superfamily
C [auth B]IPR009003Peptidase S1, PA clanHomologous Superfamily
C [auth B]IPR043502DNA/RNA polymerase superfamilyHomologous Superfamily
C [auth B]IPR044067Picornavirales 3C/3C-like protease domainDomain
C [auth B]IPR033703Picornavirus/Calicivirus coat proteinDomain
C [auth B]IPR0025272B protein, picornavirusDomain
C [auth B]IPR014838Poliovirus 3A protein-likeDomain
C [auth B]IPR036203Poliovirus core protein 3a, soluble domainHomologous Superfamily
C [auth B]IPR007094RNA-directed RNA polymerase, catalytic domainDomain
C [auth B]IPR000605Helicase, superfamily 3, single-stranded DNA/RNA virusDomain
F [auth A]IPR029053Viral coat protein subunitHomologous Superfamily
F [auth A]IPR003138Picornavirus coat protein VP4Family
F [auth A]IPR001676Picornavirus capsidDomain
F [auth A]IPR033703Picornavirus/Calicivirus coat proteinDomain