9VTJ | pdb_00009vtj

cryoEM structure of tobacco mosaic virus tRNA-like structure complexed with tobacco 60S and cycloheximide (CHX)


Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I [auth LI]60s ribosomal protein l27a-3
H [auth LH]60S ribosomal protein L23
G [auth LG]60S ribosomal protein L13a-4
F [auth LF]60S ribosomal protein L9-1
E [auth LE]60S ribosomal protein L11-1
TA [auth 14]25S rRNA---
SA [auth 13]5.8S rRNA---
RA [auth 12]5S rRNA---
QA [auth 10]RNA (204-MER)---
PA [auth Lq]60S ribosomal protein L37a
OA [auth Lp]60S ribosomal protein L44
NA [auth Ln]Ubiquitin-60S ribosomal protein L40
D [auth LD]60S ribosomal protein L4-like
MA [auth Lm]60S ribosomal protein L39-3
LA [auth Ll]60S ribosomal protein L38
KA [auth Lk]Ribosomal protein L37
JA [auth Lj]60S ribosomal protein L36
IA [auth Li]Large ribosomal subunit protein eL34
HA [auth Lh]60S ribosomal protein L35a-3-like
GA [auth Lg]60S ribosomal protein L32-1
FA [auth Lf]60S ribosomal protein L31
EA [auth Le]60S ribosomal protein L30 -
DA [auth Ld]60S ribosomal protein L29---
C [auth LC]60S ribosomal protein L3
CA [auth Lc]60S ribosomal protein L28-1-like
BA [auth Lb]60S ribosomal protein L27
AA [auth La]60S ribosomal protein L24
Z [auth LZ]Large ribosomal subunit protein eL22
Y [auth LY]60S ribosomal protein L21-1-like
X [auth LX]60S ribosomal protein L18a
W [auth LW]Ribosomal protein L19
V [auth LV]60S ribosomal protein L18-2
U [auth LU]Ribosomal protein L15
T [auth LT]60S ribosomal protein L14-1
B [auth LB]60S ribosomal protein L8-like
S [auth LS]60S ribosomal protein L13
R [auth LR]60S ribosomal protein L7a
Q [auth LQ]60S ribosomal protein L6-like isoform X1
P [auth LP]60S ribosomal protein L7-4-like
O [auth LO]60S ribosomal protein L35-like
N [auth LN]60S ribosomal protein L26-1
M [auth LM]Large ribosomal subunit protein uL23
L [auth LL]60S ribosomal protein L17-1 isoform X2
K [auth LK]60S ribosomal protein L5-like
J [auth LJ]60S ribosomal protein L10
A [auth LA]Ribosomal protein

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I [auth LI]IPR021131Large ribosomal subunit protein uL15/eL18Domain
I [auth LI]IPR030878Large ribosomal subunit protein uL15Family
I [auth LI]IPR001196Large ribosomal subunit protein uL15, conserved siteConserved Site
I [auth LI]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
H [auth LH]IPR036853Large ribosomal subunit protein uL14 superfamilyHomologous Superfamily
H [auth LH]IPR000218Large ribosomal subunit protein uL14Family
H [auth LH]IPR019972Large ribosomal subunit protein uL14, conserved siteConserved Site
G [auth LG]IPR023563Large ribosomal subunit protein uL13, conserved siteConserved Site
G [auth LG]IPR005822Large ribosomal subunit protein uL13Family
G [auth LG]IPR036899Large ribosomal subunit protein uL13 superfamilyHomologous Superfamily
G [auth LG]IPR005755Large ribosomal subunit protein uL13, eukaryota/archaeaFamily
F [auth LF]IPR020040Large ribosomal subunit protein uL6, alpha-beta domainDomain
F [auth LF]IPR002359Large ribosomal subunit protein uL6, conserved site-2Conserved Site
F [auth LF]IPR036789Large ribosomal subunit protein uL6-like, alpha-beta domain superfamilyHomologous Superfamily
F [auth LF]IPR000702Large ribosomal subunit protein uL6-likeFamily
E [auth LE]IPR057266Large ribosomal subunit protein uL5, eukaryota/archaeaFamily
E [auth LE]IPR020929Large ribosomal subunit protein uL5, conserved siteConserved Site
E [auth LE]IPR022803Large ribosomal subunit protein uL5 domain superfamilyHomologous Superfamily
E [auth LE]IPR031309Large ribosomal subunit protein uL5, C-terminalDomain
E [auth LE]IPR031310Large ribosomal subunit protein uL5, N-terminalDomain
E [auth LE]IPR002132Large ribosomal subunit protein uL5Family
PA [auth Lq]IPR002674Large ribosomal subunit protein eL43Family
PA [auth Lq]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
PA [auth Lq]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
OA [auth Lp]IPR053708Eukaryotic Ribosomal Large Subunit eL42Homologous Superfamily
OA [auth Lp]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
OA [auth Lp]IPR000552Large ribosomal subunit protein eL42Family
NA [auth Ln]IPR019954Ubiquitin conserved siteConserved Site
NA [auth Ln]IPR038587Large ribosomal subunit protein eL40 superfamilyHomologous Superfamily
NA [auth Ln]IPR000626Ubiquitin-like domainDomain
NA [auth Ln]IPR019956Ubiquitin domainDomain
NA [auth Ln]IPR050158Ubiquitin and ubiquitin-likeFamily
NA [auth Ln]IPR001975Large ribosomal subunit protein eL40 domainDomain
NA [auth Ln]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
NA [auth Ln]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
D [auth LD]IPR025755Large ribosomal subunit protein uL4, C-terminal domainDomain
D [auth LD]IPR002136Large ribosomal subunit protein uL4Family
D [auth LD]IPR013000Large ribosomal subunit protein uL4, eukaryota/archaea, conserved siteConserved Site
D [auth LD]IPR045240Large ribosomal subunit protein uL4, eukaryota/archaeaFamily
D [auth LD]IPR023574Large ribosomal subunit protein uL4 domain superfamilyHomologous Superfamily
MA [auth Lm]IPR023626Large ribosomal subunit protein eL39 domain superfamilyHomologous Superfamily
MA [auth Lm]IPR000077Large ribosomal subunit protein eL39Family
MA [auth Lm]IPR020083Large ribosomal subunit protein eL39, conserved siteConserved Site
LA [auth Ll]IPR002675Large ribosomal subunit protein eL38Family
LA [auth Ll]IPR038464Large ribosomal subunit protein eL38 superfamilyHomologous Superfamily
KA [auth Lk]IPR001569Large ribosomal subunit protein eL37Family
KA [auth Lk]IPR018267Large ribosomal subunit protein eL37, conserved siteConserved Site
KA [auth Lk]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
KA [auth Lk]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
JA [auth Lj]IPR000509Large ribosomal subunit protein eL36Family
JA [auth Lj]IPR038097Large ribosomal subunit protein eL36 domain superfamilyHomologous Superfamily
IA [auth Li]IPR008195Large ribosomal subunit protein eL34Family
IA [auth Li]IPR038562Large ribosomal subunit protein eL34, C-terminal domain superfamilyHomologous Superfamily
IA [auth Li]IPR018065Large ribosomal subunit protein eL34, conserved siteConserved Site
HA [auth Lh]IPR038661Large ribosomal subunit protein eL33 superfamilyHomologous Superfamily
HA [auth Lh]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
HA [auth Lh]IPR001780Large ribosomal subunit protein eL33Family
HA [auth Lh]IPR018266Large ribosomal subunit protein eL33, conserved siteConserved Site
GA [auth Lg]IPR036351Large ribosomal subunit protein eL32 superfamilyHomologous Superfamily
GA [auth Lg]IPR001515Large ribosomal subunit protein eL32Family
GA [auth Lg]IPR018263Large ribosomal subunit protein eL32, conserved siteConserved Site
FA [auth Lf]IPR020052Large ribosomal subunit protein eL31, conserved siteConserved Site
FA [auth Lf]IPR023621Large ribosomal subunit protein eL31 domain superfamilyHomologous Superfamily
FA [auth Lf]IPR000054Large ribosomal subunit protein eL31Family
EA [auth Le]IPR022991Large ribosomal subunit protein eL30, conserved siteConserved Site
EA [auth Le]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
EA [auth Le]IPR039109Large ribosomal subunit protein eL30-likeFamily
EA [auth Le]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
C [auth LC]IPR019926Large ribosomal subunit protein uL3, conserved siteConserved Site
C [auth LC]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
C [auth LC]IPR044892Ribosomal protein L3, domain 3, archaeal-type superfamilyHomologous Superfamily
C [auth LC]IPR000597Large ribosomal subunit protein uL3Family
C [auth LC]IPR045077Large ribosomal subunit protein uL3, archaea/eukaryotaFamily
CA [auth Lc]IPR029004Ribosomal eL28/Mak16Domain
CA [auth Lc]IPR002672Large ribosomal subunit protein eL28Family
BA [auth Lb]IPR018262Large ribosomal subunit protein eL27, conserved siteConserved Site
BA [auth Lb]IPR038655Large ribosomal subunit protein eL27 superfamilyHomologous Superfamily
BA [auth Lb]IPR005824KOWDomain
BA [auth Lb]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
BA [auth Lb]IPR001141Large ribosomal subunit protein eL27Family
BA [auth Lb]IPR041991Large ribosomal subunit protein eL27, KOW domainDomain
AA [auth La]IPR011017TRASH domainDomain
AA [auth La]IPR056366Large ribosomal subunit protein eL24Family
AA [auth La]IPR000988Large ribosomal subunit protein eL24-related, N-terminalDomain
AA [auth La]IPR023442Large ribosomal subunit protein eL24, conserved siteConserved Site
AA [auth La]IPR038630Ribosomal protein L24e/L24 superfamilyHomologous Superfamily
Z [auth LZ]IPR002671Large ribosomal subunit protein eL22Family
Z [auth LZ]IPR038526Large ribosomal subunit protein eL22 superfamilyHomologous Superfamily
Y [auth LY]IPR018259Large ribosomal subunit protein eL21, conserved siteConserved Site
Y [auth LY]IPR036948Large ribosomal subunit protein eL21 superfamilyHomologous Superfamily
Y [auth LY]IPR001147Large ribosomal subunit protein eL21Family
Y [auth LY]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
X [auth LX]IPR028877Large ribosomal subunit protein eL20Family
X [auth LX]IPR023573Large ribosomal subunit protein eL20 domainDomain
X [auth LX]IPR021138Large ribosomal subunit protein eL20, eukaryotaFamily
W [auth LW]IPR039547Large ribosomal subunit protein eL19Family
W [auth LW]IPR023638Large ribosomal subunit protein eL19, conserved siteConserved Site
W [auth LW]IPR057260Ribosomal protein L19e, C-terminal domainDomain
W [auth LW]IPR033935Large ribosomal subunit protein eL19, eukaryoticDomain
W [auth LW]IPR015972Large ribosomal subunit protein eL19, domain 1Homologous Superfamily
W [auth LW]IPR057259Ribosomal protein L19e, N-terminal domainDomain
W [auth LW]IPR035970Large ribosomal subunit protein eL19 superfamilyHomologous Superfamily
W [auth LW]IPR000196Large ribosomal subunit protein eL19 domainDomain
V [auth LV]IPR021131Large ribosomal subunit protein uL15/eL18Domain
V [auth LV]IPR000039Large ribosomal subunit protein eL18Family
V [auth LV]IPR036227Large ribosomal subunit protein uL15/eL18 superfamilyHomologous Superfamily
U [auth LU]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
U [auth LU]IPR020925Large ribosomal subunit protein eL15, conserved siteConserved Site
U [auth LU]IPR024794Large ribosomal subunit protein eL15 core domain superfamilyHomologous Superfamily
U [auth LU]IPR000439Large ribosomal subunit protein eL15Family
T [auth LT]IPR039660Large ribosomal subunit protein eL14Family
T [auth LT]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
T [auth LT]IPR002784Large ribosomal subunit protein eL14 domainDomain
T [auth LT]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
B [auth LB]IPR023672Large ribosomal subunit protein uL2, archaea/eukaryotaFamily
B [auth LB]IPR022669Large ribosomal subunit protein uL2, C-terminalDomain
B [auth LB]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
B [auth LB]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
B [auth LB]IPR022671Large ribosomal subunit protein uL2, conserved siteConserved Site
B [auth LB]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
B [auth LB]IPR022666Large ribosomal subunit protein uL2, RNA-binding domainDomain
B [auth LB]IPR014726Large ribosomal subunit protein uL2, domain 3Homologous Superfamily
B [auth LB]IPR002171Large ribosomal subunit protein uL2Family
S [auth LS]IPR001380Large ribosomal subunit protein eL13Family
S [auth LS]IPR018256Large ribosomal subunit protein eL13, conserved siteConserved Site
R [auth LR]IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
R [auth LR]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
R [auth LR]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
R [auth LR]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
R [auth LR]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
R [auth LR]IPR001921Large ribosomal subunit protein eL8, eukaryotaFamily
Q [auth LQ]IPR005568Large ribosomal subunit protein uL6, N-terminalDomain
Q [auth LQ]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
Q [auth LQ]IPR041997Large ribosomal subunit protein eL6, KOW domainDomain
Q [auth LQ]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
Q [auth LQ]IPR000915Large ribosomal subunit protein eL6Family
P [auth LP]IPR036919Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamilyHomologous Superfamily
P [auth LP]IPR005998Large ribosomal subunit protein uL30, eukaryotaFamily
P [auth LP]IPR039699Large ribosomal subunit protein uL30Family
P [auth LP]IPR035808Large ribosomal subunit protein uL30, eukaryota/archaeaDomain
P [auth LP]IPR012988Large ribosomal subunit protein uL30, N-terminal, eukaryotaDomain
P [auth LP]IPR016082Large ribosomal subunit protein uL30-like, ferredoxin-like fold domainDomain
P [auth LP]IPR018038Large ribosomal subunit protein uL30, conserved siteConserved Site
O [auth LO]IPR001854Large ribosomal subunit protein uL29Family
O [auth LO]IPR036049Large ribosomal subunit protein uL29 superfamilyHomologous Superfamily
O [auth LO]IPR045059Large ribosomal subunit protein uL29, eukaryotaFamily
N [auth LN]IPR005756Large ribosomal subunit protein uL24, eukaryota_archaeaFamily
N [auth LN]IPR041988Large ribosomal subunit protein uL24, KOW domainDomain
N [auth LN]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
N [auth LN]IPR005824KOWDomain
N [auth LN]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
N [auth LN]IPR005825Large ribosomal subunit protein uL24, conserved siteConserved Site
M [auth LM]IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
M [auth LM]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
M [auth LM]IPR005633Large ribosomal subunit protein uL23, N-terminalDomain
M [auth LM]IPR019985Large ribosomal subunit protein uL23Family
M [auth LM]IPR001014Large ribosomal subunit protein uL23, conserved siteConserved Site
M [auth LM]IPR013025Large ribosomal subunit protein uL23-likeFamily
L [auth LL]IPR018260Large ribosomal subunit protein uL22, conserved siteConserved Site
L [auth LL]IPR005721Large ribosomal subunit protein uL22, eukaryota/archaeaFamily
L [auth LL]IPR036394Ribosomal protein uL22 superfamilyHomologous Superfamily
L [auth LL]IPR001063Large ribosomal subunit protein uL22Family
L [auth LL]IPR057265Large ribosomal subunit protein uL22, archaeaFamily
K [auth LK]IPR057268Large ribosomal subunit protein uL18Family
K [auth LK]IPR005485Large ribosomal subunit protein uL18, eukaryota/archaeaFamily
K [auth LK]IPR025607Large ribosomal subunit protein uL18, C-terminal, eukaryotesDomain
J [auth LJ]IPR001197Large ribosomal subunit protein uL16, eukaryota/archaeaFamily
J [auth LJ]IPR036920Large ribosomal subunit protein uL16 superfamilyHomologous Superfamily
J [auth LJ]IPR018255Large ribosomal subunit protein uL16, conserved site, eukaryota/archaeaConserved Site
J [auth LJ]IPR016180Large ribosomal subunit protein uL16 domainDomain
J [auth LJ]IPR047873Large ribosomal subunit protein uL16Family
A [auth LA]IPR050257Large ribosomal subunit protein eL8/uL1-likeFamily
A [auth LA]IPR023673Large ribosomal subunit protein uL1, conserved siteConserved Site
A [auth LA]IPR016095Large ribosomal subunit protein uL1, 3-layer alpha/beta-sandwich domainHomologous Superfamily
A [auth LA]IPR023674Ribosomal protein uL1-likeHomologous Superfamily
A [auth LA]IPR002143Large ribosomal subunit protein uL1Family
A [auth LA]IPR028364Ribosomal protein uL1/ribosomal biogenesis proteinFamily