9UHA | pdb_00009uha

human Ribonuclease MRP state 2


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
I, J
PF01876RNase P subunit p30 (RNase_P_p30)RNase P subunit p30This protein is part of the RNase P complex that is involved in tRNA maturation [1]. Domain
PF01900Rpp14/Pop5 family (RNase_P_Rpp14)Rpp14/Pop5 family- Family
PF12328Rpp20 subunit of nuclear RNase MRP and P (Rpp20)Rpp20 subunit of nuclear RNase MRP and P- Family
PF01918Alba (Alba)AlbaAlba is a novel chromosomal protein that coats archaeal DNA without compacting it. Domain
PF01900Rpp14/Pop5 family (RNase_P_Rpp14)Rpp14/Pop5 family- Family
PF01868Ribonuclease P/MRP, subunit p29 (RNase_P-MRP_p29)Ribonuclease P/MRP, subunit p29This family consists of several archaeal and eukaryotic proteins. The archaeal proteins are found to be expressed within ribosomal operons and several of the sequences are described as ribonuclease P protein subunit p29 proteins [1,2]. The structure ...This family consists of several archaeal and eukaryotic proteins. The archaeal proteins are found to be expressed within ribosomal operons and several of the sequences are described as ribonuclease P protein subunit p29 proteins [1,2]. The structure of the RNase P subunit, Rpp29, from Methanobacterium thermoautotrophicum has been determined. Mth Rpp29 is a member of the oligonucleotide/oligosaccharide binding fold family. It contains a structured beta-barrel core and unstructured N- and C-terminal extensions bearing several highly conserved amino acid residues that could be involved in RNA contacts in the protein-RNA complex [2]. Rpp29 catalyses the endonucleolytic cleavage of RNA, removing 5'-extranucleotides from tRNA precursor. It interacts with the Rpp25 and Pop5 subunits.
Domain
PF22770POP1 C-terminal domain (POP1_C)POP1 C-terminal domainThis entry represents the C-terminal domain of human Ribonuclease P/MRP protein subunit POP1 and similar eukaryotic sequences. POP1 is a component of Ribonuclease P that cleaves the 5' leader from precursor tRNAs. The C-terminal domain of POP1 intera ...This entry represents the C-terminal domain of human Ribonuclease P/MRP protein subunit POP1 and similar eukaryotic sequences. POP1 is a component of Ribonuclease P that cleaves the 5' leader from precursor tRNAs. The C-terminal domain of POP1 interacts with H1 RNA and has a stabilizing role. This domain adopts a beta-barrel structure that is structurally very similar to the C-terminal beta-barrel domains of eIF2 gamma, EF-Tu and tRNA thiouridylase MnmA [1].
Domain
PF08170POPLD (NUC188) domain (POPLD)POPLD (NUC188) domainThis domain is found in POP1-like nucleolar proteins [1]. Domain
PF06978Ribonucleases P/MRP protein subunit POP1, N-terminal (POP1_N)Ribonucleases P/MRP protein subunit POP1, N-terminalThis entry represents a conserved region approximately 150 residues long located towards the N-terminus of the POP1 subunit that is common to both the RNase MRP and RNase P ribonucleoproteins (EC:3.1.26.5) [1]. These RNA-containing enzymes generate m ...This entry represents a conserved region approximately 150 residues long located towards the N-terminus of the POP1 subunit that is common to both the RNase MRP and RNase P ribonucleoproteins (EC:3.1.26.5) [1]. These RNA-containing enzymes generate mature tRNA molecules by cleaving their 5' ends. This is a short N-terminal domain consisting of a small helical core and a long alpha-helix [2], which is enriched with positively charged residues involved in pre-tRNA substrate recognition [2].
Domain
PF14780Nucleolus and neural progenitor protein, N-terminal (NEPRO_N)Nucleolus and neural progenitor protein, N-terminalThis domain is found at the N-terminal of nucleolus and neural progenitor protein (NEPRO) which may play a role in cortex development as part of the Notch signalling pathway. Downstream of Notch may repress the expression of proneural genes and inhib ...This domain is found at the N-terminal of nucleolus and neural progenitor protein (NEPRO) which may play a role in cortex development as part of the Notch signalling pathway. Downstream of Notch may repress the expression of proneural genes and inhibit neuronal differentiation thereby maintaining neural progenitors [1]. NEPRO may also play a role in preimplentation embryo development [2]. NEPRO interacts with multiple protein subunits of RMRP and is implicated in Anauxetic dysplasia 3 [3]. NEPRO is likely the human orthologue of RMP1 subunit from yeast and they share a four-helix bundle domain structure.
Domain
PF08584Ribonuclease P 40kDa (Rpp40) subunit (Ribonuc_P_40)Ribonuclease P 40kDa (Rpp40) subunit- Family
PF15719Ribonuclease MRP subunit P24-like (Rmp24-like)Ribonuclease MRP subunit P24-like- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
I, J
Ribonuclease P protein subunit p30
Ribonuclease P protein subunit p14
Ribonuclease P protein subunit p20
Ribonuclease P protein subunit p25
Ribonuclease P/MRP protein subunit POP5
Ribonuclease P protein subunit p29
Ribonuclease P protein subunit p38
Ribonucleases P/MRP protein subunit POP1
Nucleolus and neural progenitor protein
Ribonuclease P protein subunit p40
UPF0711 protein C18orf21
RNA (270-MER)---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
I, J
IPR016195Polymerase/histidinol phosphatase-likeHomologous Superfamily
I, J
IPR002738RNase P subunit p30Family
IPR002759RNase P subunit Pop5/Rpp14/Rnp2-likeFamily
IPR038085RNase P subunit Pop5/Rpp14/Rnp2-like domain superfamilyHomologous Superfamily
IPR036882Alba-like domain superfamilyHomologous Superfamily
IPR014612Ribonucleases P/MRP protein subunit Rpp20/Pop7Family
IPR036882Alba-like domain superfamilyHomologous Superfamily
IPR002775DNA/RNA-binding protein Alba-likeDomain
IPR051958Alba-like nucleic acid-bindingFamily
IPR002759RNase P subunit Pop5/Rpp14/Rnp2-likeFamily
IPR016819Ribonuclease P/MRP protein subunit Pop5Family
IPR038085RNase P subunit Pop5/Rpp14/Rnp2-like domain superfamilyHomologous Superfamily
IPR036980Ribonuclease P/MRP subunit Rpp29 superfamilyHomologous Superfamily
IPR002730Ribonuclease P protein subunit Rpp29/RNP1Family
IPR023534Rof/RNase P-likeHomologous Superfamily
IPR016848Ribonuclease P/MRP subunit Rpp29Family
IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
IPR042848Ribonuclease P protein subunit Rpp38Family
IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
IPR055079POP1, C-terminal domainDomain
IPR039182Ribonucleases P/MRP protein subunit Pop1Family
IPR009723Pop1, N-terminalDomain
IPR012590POPLD domainDomain
IPR052835Nucleolus and neural progenitor proteinFamily
IPR027951Nucleolus and neural progenitor protein-like, N-terminal domainDomain
IPR013893Ribonuclease P protein subunit Rpp40Family
IPR029779Ribonuclease MRP subunit P24-likeFamily

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
I, J
P78346
O95059
O75817
Q9BUL9
Q969H6
O95707
P78345
Q99575
Q6NW34
O75818
Q32NC0