Annotations: 9T65

Complex linking two cytoplasmic lattice filaments

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF08527	Protein-arginine deiminase (PAD) middle domain (PAD_M)	Protein-arginine deiminase (PAD) middle domain	This family represents the central non-catalytic domain of protein-arginine deiminase. This domain has an immunoglobulin-like fold.	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	PF03068	Protein-arginine deiminase (PAD) (PAD)	Protein-arginine deiminase (PAD)	-	Family
A, B, C, D, E A, B, C, D, E, F, G, H	PF08526	Protein-arginine deiminase (PAD) N-terminal domain (PAD_N)	Protein-arginine deiminase (PAD) N-terminal domain	This family represents the N-terminal non-catalytic domain of protein-arginine deiminase. This domain has a cupredoxin-like fold.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
L [auth k]	F-box/WD repeat-containing protein	-	-	-
K [auth o]	E3 ubiquitin-protein ligase UHRF1	histone H3K9me2/3 reader activity histone reader activity histone H3 reader activity chromatin-protein adaptor activity protein-macromolecule adaptor activity molecular adaptor activity binding nucleic acid binding protein binding histone binding aminoacyltransferase activity catalytic activity, acting on a protein acyltransferase activity transferase activity histone H3K9me2/3 reader activity histone reader activity histone H3 reader activity chromatin-protein adaptor activity protein-macromolecule adaptor activity molecular adaptor activity binding nucleic acid binding protein binding histone binding aminoacyltransferase activity catalytic activity, acting on a protein acyltransferase activity transferase activity histone ubiquitin ligase activity ubiquitin-protein transferase activity ubiquitin-like protein transferase activity histone H3K14 ubiquitin ligase activity histone H3 ubiquitin ligase activity ubiquitin-like protein ligase activity ubiquitin protein ligase activity histone modifying activity catalytic activity DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding double-stranded DNA binding cis-regulatory region sequence-specific DNA binding transcription regulatory region nucleic acid binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding methyl-CpG binding small molecule binding hemi-methylated DNA-binding identical protein binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding histone H3K23 ubiquitin ligase activity histone H3K18 ubiquitin ligase activity	protein autoubiquitination primary metabolic process protein ubiquitination macromolecule modification metabolic process cellular process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal RNA metabolic process nucleobase-containing compound biosynthetic process protein autoubiquitination primary metabolic process protein ubiquitination macromolecule modification metabolic process cellular process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal RNA metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process DNA-templated transcription nucleic acid biosynthetic process biosynthetic process catabolic process protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process ubiquitin-dependent protein catabolic process cellular component organization chromatin organization cellular component organization or biogenesis chromosomal DNA methylation maintenance following DNA replication cellular response to stimulus response to stimulus DNA metabolic process cellular response to stress DNA damage response response to stress DNA repair regulation of cellular process negative regulation of biological process regulation of primary metabolic process negative regulation of RNA biosynthetic process regulation of RNA metabolic process transcription by RNA polymerase II negative regulation of cellular process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of transcription by RNA polymerase II negative regulation of DNA-templated transcription regulation of biological process negative regulation of transcription by RNA polymerase II negative regulation of metabolic process biological regulation regulation of macromolecule metabolic process regulation of gene expression negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA metabolic process positive regulation of DNA-templated transcription positive regulation of biological process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process positive regulation of cellular process positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process positive regulation of protein metabolic process regulation of protein metabolic process negative regulation of gene expression via chromosomal CpG island methylation chromatin remodeling epigenetic regulation of gene expression negative regulation of gene expression negative regulation of gene expression, epigenetic localization protein localization to chromatin protein localization to chromosome protein localization to organelle macromolecule localization intracellular protein localization cell population proliferation regulation of cell population proliferation regulation of epithelial cell proliferation epithelial cell proliferation cellular component biogenesis cellular component assembly heterochromatin formation heterochromatin organization microtubule cytoskeleton organization membraneless organelle assembly mitotic cell cycle mitotic sister chromatid segregation cell cycle chromosome segregation microtubule cytoskeleton organization involved in mitosis spindle organization cell cycle process mitotic nuclear division organelle assembly organelle fission chromosome organization sister chromatid segregation spindle assembly mitotic spindle organization mitotic spindle assembly organelle organization nuclear division mitotic cell cycle process nuclear chromosome segregation microtubule-based process cytoskeleton organization	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol intracellular organelle organelle membraneless organelle intracellular membraneless organelle chromatin chromosome heterochromatin membrane-bounded organelle nucleus membrane-enclosed lumen cellular anatomical structure intracellular anatomical structure cytoplasm cytosol intracellular organelle organelle membraneless organelle intracellular membraneless organelle chromatin chromosome heterochromatin membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen organelle lumen nuclear lumen nuclear matrix nucleoplasm replication fork euchromatin
J [auth n]	NACHT, LRR and PYD domains-containing protein 14	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding	developmental process spermatogenesis sexual reproduction reproductive process multicellular organismal reproductive process developmental process involved in reproduction male gamete generation gamete generation cellular developmental process cell differentiation cellular process regulation of defense response regulation of biological process response to stimulus developmental process spermatogenesis sexual reproduction reproductive process multicellular organismal reproductive process developmental process involved in reproduction male gamete generation gamete generation cellular developmental process cell differentiation cellular process regulation of defense response regulation of biological process response to stimulus regulation of response to external stimulus defense response biological regulation regulation of inflammatory response response to external stimulus regulation of response to stimulus response to stress regulation of response to stress inflammatory response	cellular anatomical structure intracellular anatomical structure cytoplasm
I [auth l]	S-phase kinase-associated protein 1	protein complex scaffold activity ubiquitin ligase complex scaffold activity structural molecule activity protein binding binding protein domain specific binding enzyme regulator activity ubiquitin ligase activator activity enzyme activator activity ubiquitin-protein transferase regulator activity molecular function activator activity molecular function regulator activity ubiquitin-protein transferase activator activity cullin family protein binding protein complex scaffold activity ubiquitin ligase complex scaffold activity structural molecule activity protein binding binding protein domain specific binding enzyme regulator activity ubiquitin ligase activator activity enzyme activator activity ubiquitin-protein transferase regulator activity molecular function activator activity molecular function regulator activity ubiquitin-protein transferase activator activity cullin family protein binding ubiquitin-like ligase-substrate adaptor activity enzyme-substrate adaptor activity protein-macromolecule adaptor activity molecular adaptor activity beta-catenin binding F-box domain binding	maintenance of protein location cellular localization maintenance of protein location in nucleus protein localization to nucleus maintenance of location maintenance of location in cell localization maintenance of protein location in cell macromolecule localization protein localization to organelle cellular process maintenance of protein localization in organelle intracellular protein localization positive regulation of epithelial cell apoptotic process maintenance of protein location cellular localization maintenance of protein location in nucleus protein localization to nucleus maintenance of location maintenance of location in cell localization maintenance of protein location in cell macromolecule localization protein localization to organelle cellular process maintenance of protein localization in organelle intracellular protein localization positive regulation of epithelial cell apoptotic process regulation of biological process positive regulation of programmed cell death regulation of cellular process regulation of epithelial cell apoptotic process regulation of apoptotic process biological regulation positive regulation of biological process regulation of programmed cell death cell death positive regulation of apoptotic process epithelial cell apoptotic process apoptotic process programmed cell death positive regulation of cellular process primary metabolic process protein ubiquitination macromolecule modification metabolic process protein metabolic process macromolecule metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal catabolic process proteasomal protein catabolic process protein catabolic process proteasome-mediated ubiquitin-dependent protein catabolic process macromolecule catabolic process modification-dependent macromolecule catabolic process modification-dependent protein catabolic process SCF-dependent proteasomal ubiquitin-dependent protein catabolic process ubiquitin-dependent protein catabolic process protein polyubiquitination protein K48-linked ubiquitination protein monoubiquitination cellular component organization chromatin organization chromatin remodeling cellular component organization or biogenesis	membrane-bounded organelle intracellular organelle protein-containing complex cellular anatomical structure intracellular anatomical structure organelle nucleus nuclear protein-containing complex intracellular membrane-bounded organelle PcG protein complex cell-cell junction anchoring junction gap junction cell junction membrane-bounded organelle intracellular organelle protein-containing complex cellular anatomical structure intracellular anatomical structure organelle nucleus nuclear protein-containing complex intracellular membrane-bounded organelle PcG protein complex cell-cell junction anchoring junction gap junction cell junction centrosome microtubule organizing center cytoskeleton membraneless organelle intracellular membraneless organelle microtubule cytoskeleton cytoplasm cytosol membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen cullin-RING ubiquitin ligase complex ubiquitin ligase complex catalytic complex SCF ubiquitin ligase complex transferase complex intracellular protein-containing complex Cul7-RING ubiquitin ligase complex
A, B, C, D, E A, B, C, D, E, F, G, H	Inactive protein-arginine deiminase type-6	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding cytoskeletal protein binding protein binding tubulin binding structural molecule activity structural constituent of cytoplasmic lattice identical protein binding	developmental process multicellular organism development multicellular organismal process embryonic cleavage anatomical structure development cellular process cell division embryo development protein storage nutrient storage embryo development ending in birth or egg hatching chordate embryonic development in utero embryonic development animal gross anatomical part developmental process developmental process multicellular organism development multicellular organismal process embryonic cleavage anatomical structure development cellular process cell division embryo development protein storage nutrient storage embryo development ending in birth or egg hatching chordate embryonic development in utero embryonic development animal gross anatomical part developmental process cellular component organization organelle organization cellular component organization or biogenesis cytoskeleton organization regulation of biosynthetic process epigenetic programming of gene expression regulation of biological process regulation of cellular process epigenetic programming in the zygotic pronuclei epigenetic regulation of gene expression biological regulation regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression biosynthetic process chromatin organization chromatin remodeling regulation of macromolecule biosynthetic process metabolic process macromolecule metabolic process regulation of metabolic process protein biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression localization regulation of translation by machinery localization protein metabolic process intracellular protein localization regulation of protein metabolic process primary metabolic process translation regulation of translation macromolecule localization cytoplasm organization	cytoplasmic lattice ooplasm intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle cytoplasm membrane-bounded organelle intracellular vesicle intracellular membrane-bounded organelle endomembrane system cytoplasmic vesicle cytoplasmic lattice ooplasm intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle cytoplasm membrane-bounded organelle intracellular vesicle intracellular membrane-bounded organelle endomembrane system cytoplasmic vesicle secretory granule secretory vesicle vesicle cortical granule cytoskeleton intermediate filament cytoskeleton nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
K [auth o]	IPR015947	PUA-like superfamily	Homologous Superfamily
K [auth o]	IPR001965	Zinc finger, PHD-type	Domain
K [auth o]	IPR047406	E3 ubiquitin-protein ligase UHRF1, ubiquitin-like domain	Domain
K [auth o]	IPR013083	Zinc finger, RING/FYVE/PHD-type	Homologous Superfamily
K [auth o]	IPR001841	Zinc finger, RING-type	Domain
K [auth o]	IPR036987	SRA-YDG superfamily	Homologous Superfamily
K [auth o]	IPR003105	SRA-YDG	Domain
K [auth o]	IPR019787	Zinc finger, PHD-finger	Domain
K [auth o]	IPR011011	Zinc finger, FYVE/PHD-type	Homologous Superfamily
K [auth o]	IPR017907	Zinc finger, RING-type, conserved site	Conserved Site
K [auth o]	IPR000626	Ubiquitin-like domain	Domain
K [auth o]	IPR021991	UHRF1, tandem tudor domain	Domain
K [auth o]	IPR029071	Ubiquitin-like domain superfamily	Homologous Superfamily
K [auth o]	IPR045134	UHRF1/2-like	Family
J [auth n]	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
J [auth n]	IPR041267	NACHT, LRR and PYD domains-containing protein, helical domain HD2	Domain
J [auth n]	IPR050637	NLRP family, innate immunity and inflammation regulators	Family
J [auth n]	IPR001611	Leucine-rich repeat	Repeat
J [auth n]	IPR041075	NOD1/2, winged helix domain	Domain
J [auth n]	IPR007111	NACHT nucleoside triphosphatase	Domain
J [auth n]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
I [auth l]	IPR016073	SKP1 component, POZ domain	Domain
I [auth l]	IPR001232	S-phase kinase-associated protein 1-like	Family
I [auth l]	IPR036296	SKP1-like, dimerisation domain superfamily	Homologous Superfamily
I [auth l]	IPR016072	SKP1 component, dimerisation	Domain
I [auth l]	IPR011333	SKP1/BTB/POZ domain superfamily	Homologous Superfamily
I [auth l]	IPR016897	S-phase kinase-associated protein 1	Family
A, B, C, D, E A, B, C, D, E, F, G, H	IPR013732	Protein-arginine deiminase (PAD), N-terminal	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR013733	Protein-arginine deiminase (PAD), central domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR008972	Cupredoxin	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR038685	PAD, N-terminal domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR013530	Protein-arginine deiminase, C-terminal	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR036556	Protein-arginine deiminase, central domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR004303	Protein-arginine deiminase	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9T65 | pdb_00009t65

Complex linking two cytoplasmic lattice filaments

External Resource: Annotation

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage