9T3Y | pdb_00009t3y

Cryo-EM structure of alphaM/beta2:C3d-anti-CR3-Nb headpiece complex (HPO2 3D class reconstruction)


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
CSCOP2B SuperfamilyTerpenoid cyclases/Protein prenyltransferases 8038414 3001024 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyvWA-like 8033178 3000832 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF07678A-macroglobulin TED domain (TED_complement)A-macroglobulin TED domain- Repeat
PF21308Complement component 3, CUB domain, second segment (C3_CUB2)Complement component 3, CUB domain, second segmentComplement C3 is major component in the both the classical and alternative complement activation pathways. C3 is cleaved into two chains (alpha and beta) by C3 convertases. This entry represents the second segment of the CUB domain, which is complete ...Complement C3 is major component in the both the classical and alternative complement activation pathways. C3 is cleaved into two chains (alpha and beta) by C3 convertases. This entry represents the second segment of the CUB domain, which is completed by Pfam:PF21406 [2]. The CUB domain is interrupted by the TE domain. The CUB, TE and MG8 domains form a massive, tightly packed super domain. This entry also includes venom factors, also known as Complement C3 homologues. These are complement-activating proteins with structural and functional similarities to complement component C3b, the activated form of C3 [6].
Domain
PF00362Integrin beta chain VWA domain (Integrin_beta)Integrin beta chain VWA domainIntegrins have been found in animals and their homologues have also been found in cyanobacteria, probably due to horizontal gene transfer [1]. This domain corresponds to the integrin beta VWA domain. Domain
PF17205Integrin plexin domain (PSI_integrin)Integrin plexin domainThis short disulphide rich domain is found at the N-terminus of integrin beta chains. Domain
PF00092von Willebrand factor type A domain (VWA)von Willebrand factor type A domainDomain
PF01839FG-GAP repeat (FG-GAP)FG-GAP repeat- Repeat
PF08441Integrin alpha Ig-like domain 1 (Integrin_A_Ig_1)Integrin alpha Ig-like domain 1This domain is found in integrin alpha and integrin alpha precursors to the C terminus of a number of Pfam:PF01839 repeats and to the N-terminus of the Pfam:PF00357 cytoplasmic region. This region is composed of an immunoglobulin-like domain. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Nanobody,Complement C3dg fragment
Integrin beta-2
Isoform 2 of Integrin alpha-M

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR019742Alpha-2-macroglobulin, conserved siteConserved Site
IPR009048Alpha-macroglobulin, receptor-bindingDomain
IPR049466Complement component 3, CUB domain, first segmentDomain
IPR001599Alpha-2-macroglobulinDomain
IPR001134Netrin domainDomain
IPR011626Alpha-macroglobulin-like, TED domainDomain
IPR002890Macroglobulin domainDomain
IPR013783Immunoglobulin-like foldHomologous Superfamily
IPR008930Terpenoid cyclases/protein prenyltransferase alpha-alpha toroidHomologous Superfamily
IPR041555Macroglobulin domain MG3Domain
IPR047565Alpha-macroglobulin-like, thiol-ester bond-forming regionConserved Site
IPR048848Complement component 3, CUB domain, second segmentDomain
IPR018081Anaphylatoxin, complement systemHomologous Superfamily
IPR035815Complement C3-like, NTR domainDomain
IPR018933Netrin module, non-TIMP typeDomain
IPR001840Anaphylatoxin, complement system domainDomain
IPR041425Complement C3/4/5, macroglobulin domain MG1Domain
IPR011625Alpha-2-macroglobulin, bait region domainDomain
IPR008993Tissue inhibitor of metalloproteinases-like, OB-foldHomologous Superfamily
IPR000020Anaphylatoxin/fibulinDomain
IPR036595Alpha-macroglobulin, receptor-binding domain superfamilyHomologous Superfamily
IPR050473Alpha-2-macroglobulin/Complement systemFamily
IPR040839Macroglobulin domain MG4Domain
IPR033760Integrin beta N-terminalDomain
IPR036349Integrin beta tail domain superfamilyHomologous Superfamily
IPR014836Integrin beta subunit, cytoplasmic domainDomain
IPR012896Integrin beta subunit, tailDomain
IPR036465von Willebrand factor A-like domain superfamilyHomologous Superfamily
IPR057073Integrin beta, epidermal growth factor-like domain 2Domain
IPR032695Integrin domain superfamilyHomologous Superfamily
IPR015812Integrin beta subunitFamily
IPR057243Integrins beta, I-EGF domain, conserved siteConserved Site
IPR002369Integrin beta subunit, VWA domainDomain
IPR016201PSI domainDomain
IPR015439Integrin beta-2 superfamilyHomologous Superfamily
IPR013517FG-GAP repeatRepeat
IPR036465von Willebrand factor A-like domain superfamilyHomologous Superfamily
IPR013649Integrin alpha, first immunoglubulin-like domainDomain
IPR002035von Willebrand factor, type ADomain
IPR048285Integrin alpha, second immunoglobulin-like domainDomain
IPR032695Integrin domain superfamilyHomologous Superfamily
IPR013519Integrin alpha beta-propellorRepeat
IPR000413Integrin alpha chainFamily
IPR048633Integrin alpha-X-like, third Ig-like domainDomain
IPR028994Integrin alpha, N-terminalHomologous Superfamily
IPR018184Integrin alpha chain, C-terminal cytoplasmic region, conserved siteConserved Site

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
P01024
P05107
P11215