9SWN | pdb_00009swn

Cryo-EM structure of yeast telomerase holoenzyme


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
D [auth F]SCOP2B SuperfamilyAlbA-like 8091019 3000507 SCOP2B (2022-06-29)
A [auth C]SCOP2B SuperfamilyNucleic acid-binding proteins 8052152 3000135 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
C [auth G]PF10373Est1 DNA/RNA binding domain (EST1_DNA_bind)Est1 DNA/RNA binding domain- Repeat
C [auth G]PF10374Telomerase activating protein Est1 (EST1)Telomerase activating protein Est1- Repeat
G [auth A]PF12009Telomerase ribonucleoprotein complex - RNA binding domain (Telomerase_RBD)Telomerase ribonucleoprotein complex - RNA binding domainTelomeres in most organisms are comprised of tandem simple sequence repeats [1]. The total length of telomeric repeat sequence at each chromosome end is determined in a balance of sequence loss and sequence addition [1]. One major influence on telome ...Telomeres in most organisms are comprised of tandem simple sequence repeats [1]. The total length of telomeric repeat sequence at each chromosome end is determined in a balance of sequence loss and sequence addition [1]. One major influence on telomere length is the enzyme telomerase [1]. It is a reverse transcriptase that adds these simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme [1]. The RNA binding domain of telomerase - TRBD - is made up of twelve alpha helices and two short beta sheets [2]. How telomerase and associated regulatory factors physically interact and function with each other to maintain appropriate telomere length is poorly understood. It is known however that TRBD is involved in formation of the holoenzyme (which performs the telomere extension) in addition to recognition and binding of RNA [2].
Domain
E [auth D]PF22770POP1 C-terminal domain (POP1_C)POP1 C-terminal domainThis entry represents the C-terminal domain of human Ribonuclease P/MRP protein subunit POP1 and similar eukaryotic sequences. POP1 is a component of Ribonuclease P that cleaves the 5' leader from precursor tRNAs. The C-terminal domain of POP1 intera ...This entry represents the C-terminal domain of human Ribonuclease P/MRP protein subunit POP1 and similar eukaryotic sequences. POP1 is a component of Ribonuclease P that cleaves the 5' leader from precursor tRNAs. The C-terminal domain of POP1 interacts with H1 RNA and has a stabilizing role. This domain adopts a beta-barrel structure that is structurally very similar to the C-terminal beta-barrel domains of eIF2 gamma, EF-Tu and tRNA thiouridylase MnmA [1].
Domain
E [auth D]PF08170POPLD (NUC188) domain (POPLD)POPLD (NUC188) domainThis domain is found in POP1-like nucleolar proteins [1]. Domain
D [auth F]PF12328Rpp20 subunit of nuclear RNase MRP and P (Rpp20)Rpp20 subunit of nuclear RNase MRP and P- Family
B [auth E]PF01918Alba (Alba)AlbaAlba is a novel chromosomal protein that coats archaeal DNA without compacting it. Domain
A [auth C]PF10341Shelterin complex subunit, TPP1/ACD (TPP1)Shelterin complex subunit, TPP1/ACDTPP1 is a component of the telomerase holoenzyme, involved in telomere replication. It has been demonstrated that TPP1 dimerises and binds to DNA and RNA. Furthermore, TPP1 stimulates the dissociation of RNA/DNA hetero-duplexes [1,2]. Yeast telomera ...TPP1 is a component of the telomerase holoenzyme, involved in telomere replication. It has been demonstrated that TPP1 dimerises and binds to DNA and RNA. Furthermore, TPP1 stimulates the dissociation of RNA/DNA hetero-duplexes [1,2]. Yeast telomerase protein TPP1 (Est3 in yeast) is a novel type of GTPase [3]. The key residues in Swiss:Q03096 are an Asp at residue 86 and the Arg at residue 110. The Asp is totally conserved in the family, whereas the Arg is not so well conserved. The N-terminal of TPP1 is likely to be the binding surface for TINF2, whereas the C-terminus probably binds to POT1, thereby tethering POT1 to the shelterin complex [4]. The complex bound to telomeric DNA increases the activity and processivity of the human telomerase core enzyme, thus helping to maintain the length of the telomeres [5,6]. This domain is conserved from fungi to mammals, hence family Telomere_Pot1 has been merged into the family [7]. The human shelterin complex includes six proteins: telomere repeat binding factor 1 (TRF1), TRF2, repressor/activator protein 1 (RAP1), TRF1-interacting nuclear protein 2 (TIN2), TIN2-interacting protein 1 (TPP1) and protection of telomeres 1 (POT1) [8].
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C [auth G]Telomere elongation protein EST1
G [auth A]Telomerase reverse transcriptase
F [auth B]TLC1 RNA---
E [auth D]Ribonucleases P/MRP protein subunit POP1
D [auth F]Ribonucleases P/MRP protein subunit POP7
B [auth E]Ribonucleases P/MRP protein subunit POP6
A [auth C]Telomere replication protein EST3