9QQT | pdb_00009qqt

Methyl-coenzyme M reductase of ANME-2d Candidatus Methanoperedens Vercelli Strain 1 from a bioreactor enrichment culture

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
C	2OG-FeII_Oxy,DIOX_N	e9qqtC1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: 2OG-FeII_Oxy,DIOX_N	ECOD (v295.2)
B	p450	e9qqtB1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: p450	ECOD (v295.2)
A	adh_short	e9qqtA1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: adh_short	ECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
D	Methyl-coenzyme M reductase subunit alpha	coenzyme-B sulfoethylthiotransferase activity alkylthioltransferase activity transferase activity, transferring sulphur-containing groups transferase activity catalytic activity	cellular respiration energy derivation by oxidation of organic compounds alkane biosynthetic process methane metabolic process generation of precursor metabolites and energy hydrocarbon metabolic process biosynthetic process energy derivation by oxidation of reduced inorganic compounds methanogenesis metabolic process cellular process hydrocarbon biosynthetic process anaerobic respiration	-
C, F	Methyl-coenzyme M reductase subunit gamma	-	-	-
B, E	Methyl-coenzyme M reductase subunit beta	-	-	-
A	Methyl-coenzyme M reductase subunit alpha	coenzyme-B sulfoethylthiotransferase activity alkylthioltransferase activity transferase activity, transferring sulphur-containing groups transferase activity catalytic activity	cellular respiration energy derivation by oxidation of organic compounds alkane biosynthetic process methane metabolic process generation of precursor metabolites and energy hydrocarbon metabolic process biosynthetic process energy derivation by oxidation of reduced inorganic compounds methanogenesis metabolic process cellular process hydrocarbon biosynthetic process anaerobic respiration	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
D	IPR009047	Methyl-coenzyme M reductase, alpha subunit, C-terminal	Domain
D	IPR009024	Methyl-coenzyme M reductase, ferredoxin-like fold	Homologous Superfamily
D	IPR003183	Methyl-coenzyme M reductase, alpha subunit, N-terminal	Domain
D	IPR008924	Methyl-coenzyme M reductase, alpha/beta subunit, C-terminal	Homologous Superfamily
D	IPR016212	Methyl coenzyme M reductase, alpha subunit	Family
D	IPR015823	Methyl-coenzyme M reductase, alpha subunit, N-terminal subdomain 2	Homologous Superfamily
D	IPR015811	Methyl-coenzyme M reductase, alpha subunit, N-terminal subdomain 1	Homologous Superfamily
A	IPR009047	Methyl-coenzyme M reductase, alpha subunit, C-terminal	Domain
A	IPR009024	Methyl-coenzyme M reductase, ferredoxin-like fold	Homologous Superfamily
A	IPR003183	Methyl-coenzyme M reductase, alpha subunit, N-terminal	Domain
A	IPR008924	Methyl-coenzyme M reductase, alpha/beta subunit, C-terminal	Homologous Superfamily
A	IPR016212	Methyl coenzyme M reductase, alpha subunit	Family
A	IPR015823	Methyl-coenzyme M reductase, alpha subunit, N-terminal subdomain 2	Homologous Superfamily
A	IPR015811	Methyl-coenzyme M reductase, alpha subunit, N-terminal subdomain 1	Homologous Superfamily

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
D	AGM	Parent Component: ARG : AA0272 : 5-methyl-L-arginine MOD:00277
D	DYA	Parent Component: ASP : AA0272
D	GL3	Parent Component: GLY : AA0272 , AA0265 : 5-methyl-L-arginine MOD:00277 , 1-thioglycine (internal) MOD:00270 , 1-thioglycine (C-terminal) MOD:01623
D	MHS	Parent Component: HIS : AA0272 , AA0265 , AA0073 : 5-methyl-L-arginine MOD:00277 , 1-thioglycine (internal) MOD:00270 , 1-thioglycine (C-terminal) MOD:01623 , 3'-methyl-L-histidine MOD:00082
D	SMC	Parent Component: CYS : AA0272 , AA0265 , AA0073 , AA0234 : 5-methyl-L-arginine MOD:00277 , 1-thioglycine (internal) MOD:00270 , 1-thioglycine (C-terminal) MOD:01623 , 3'-methyl-L-histidine MOD:00082 , S-methyl-L-cysteine MOD:00239
D	TRX	Parent Component: TRP : AA0272 , AA0265 , AA0073 , AA0234
C, F	A1I9G	Parent Component: HIS : AA0272 , AA0265 , AA0073 , AA0234
A	AGM	Parent Component: ARG : AA0272 , AA0265 , AA0073 , AA0234 , AA0272 : 5-methyl-L-arginine MOD:00277 , 1-thioglycine (internal) MOD:00270 , 1-thioglycine (C-terminal) MOD:01623 , 3'-methyl-L-histidine MOD:00082 , S-methyl-L-cysteine MOD:00239 , 5-methyl-L-arginine MOD:00277
A	CSO	Parent Component: CYS : AA0272 , AA0265 , AA0073 , AA0234 , AA0272 , AA0205 : 5-methyl-L-arginine MOD:00277 , 1-thioglycine (internal) MOD:00270 , 1-thioglycine (C-terminal) MOD:01623 , 3'-methyl-L-histidine MOD:00082 , S-methyl-L-cysteine MOD:00239 , 5-methyl-L-arginine MOD:00277 , L-cysteine sulfenic acid MOD:00210
A	DYA	Parent Component: ASP : AA0272 , AA0265 , AA0073 , AA0234 , AA0272 , AA0205
A	GL3	Parent Component: GLY : AA0272 , AA0265 , AA0073 , AA0234 , AA0272 , AA0205 , AA0265 : 5-methyl-L-arginine MOD:00277 , 1-thioglycine (internal) MOD:00270 , 1-thioglycine (C-terminal) MOD:01623 , 3'-methyl-L-histidine MOD:00082 , S-methyl-L-cysteine MOD:00239 , 5-methyl-L-arginine MOD:00277 , L-cysteine sulfenic acid MOD:00210 , 1-thioglycine (internal) MOD:00270 , 1-thioglycine (C-terminal) MOD:01623
A	MHS	Parent Component: HIS : AA0272 , AA0265 , AA0073 , AA0234 , AA0272 , AA0205 , AA0265 , AA0073 : 5-methyl-L-arginine MOD:00277 , 1-thioglycine (internal) MOD:00270 , 1-thioglycine (C-terminal) MOD:01623 , 3'-methyl-L-histidine MOD:00082 , S-methyl-L-cysteine MOD:00239 , 5-methyl-L-arginine MOD:00277 , L-cysteine sulfenic acid MOD:00210 , 1-thioglycine (internal) MOD:00270 , 1-thioglycine (C-terminal) MOD:01623 , 3'-methyl-L-histidine MOD:00082
A	SMC	Parent Component: CYS : AA0272 , AA0265 , AA0073 , AA0234 , AA0272 , AA0205 , AA0265 , AA0073 , AA0234 : 5-methyl-L-arginine MOD:00277 , 1-thioglycine (internal) MOD:00270 , 1-thioglycine (C-terminal) MOD:01623 , 3'-methyl-L-histidine MOD:00082 , S-methyl-L-cysteine MOD:00239 , 5-methyl-L-arginine MOD:00277 , L-cysteine sulfenic acid MOD:00210 , 1-thioglycine (internal) MOD:00270 , 1-thioglycine (C-terminal) MOD:01623 , 3'-methyl-L-histidine MOD:00082 , S-methyl-L-cysteine MOD:00239
A	TRX	Parent Component: TRP : AA0272 , AA0265 , AA0073 , AA0234 , AA0272 , AA0205 , AA0265 , AA0073 , AA0234

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.