9QGN | pdb_00009qgn

Cryo-EM structure of the PlPVC1 cap, 6-fold symmetrized (C6), in extended state

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
X [auth 2F]	IBR	e9qgn2F1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: IBR	ECOD (v295.2)
W [auth 2E]	IBR	e9qgn2E1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: IBR	ECOD (v295.2)
V [auth 2D]	IBR	e9qgn2D1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: IBR	ECOD (v295.2)
U [auth 2C]	IBR	e9qgn2C1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: IBR	ECOD (v295.2)
T [auth 2B]	IBR	e9qgn2B1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: IBR	ECOD (v295.2)
S [auth 2A]	Integrase_Zn	e9qgn2A1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Integrase_Zn	ECOD (v295.2)
R [auth 1L]	IBR	e9qgn1L1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: IBR	ECOD (v295.2)
Q [auth 1K]	IBR	e9qgn1K1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: IBR	ECOD (v295.2)
P [auth 1J]	IBR	e9qgn1J1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: IBR	ECOD (v295.2)
O [auth 1I]	IBR	e9qgn1I1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: IBR	ECOD (v295.2)
N [auth 1H]	IBR	e9qgn1H1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: IBR	ECOD (v295.2)
M [auth 1G]	IBR	e9qgn1G1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: IBR	ECOD (v295.2)
L [auth 1F]	IBR	e9qgn1F1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: IBR	ECOD (v295.2)
K [auth 1E]	IBR	e9qgn1E1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: IBR	ECOD (v295.2)
J [auth 1D]	IBR	e9qgn1D1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: IBR	ECOD (v295.2)
I [auth 1C]	IBR	e9qgn1C1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: IBR	ECOD (v295.2)
H [auth 1B]	IBR	e9qgn1B1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: IBR	ECOD (v295.2)
G [auth 1A]	IBR	e9qgn1A1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: IBR	ECOD (v295.2)
A		e9qgnA1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: Hypothetical protein YqbG-like	F:	ECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
S [auth 2A], T [auth 2B], U [auth 2C], V [auth 2D], W [auth 2E], S [auth 2A], T [auth 2B], U [auth 2C], V [auth 2D], W [auth 2E], X [auth 2F]	Phage tail sheath family protein	-	-	-
G [auth 1A], H [auth 1B], I [auth 1C], J [auth 1D], K [auth 1E], G [auth 1A], H [auth 1B], I [auth 1C], J [auth 1D], K [auth 1E], L [auth 1F], M [auth 1G], N [auth 1H], O [auth 1I], P [auth 1J], Q [auth 1K], R [auth 1L]	Phage tail protein	structural molecule activity	-	-
A, B, C, D, E A, B, C, D, E, F	DUF4255 domain-containing protein	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
S [auth 2A], T [auth 2B], U [auth 2C], V [auth 2D], W [auth 2E], S [auth 2A], T [auth 2B], U [auth 2C], V [auth 2D], W [auth 2E], X [auth 2F]	IPR052042	Tail sheath structural protein	Family
S [auth 2A], T [auth 2B], U [auth 2C], V [auth 2D], W [auth 2E], S [auth 2A], T [auth 2B], U [auth 2C], V [auth 2D], W [auth 2E], X [auth 2F]	IPR020287	Tail sheath protein, C-terminal domain	Domain
G [auth 1A], H [auth 1B], I [auth 1C], J [auth 1D], K [auth 1E], G [auth 1A], H [auth 1B], I [auth 1C], J [auth 1D], K [auth 1E], L [auth 1F], M [auth 1G], N [auth 1H], O [auth 1I], P [auth 1J], Q [auth 1K], R [auth 1L]	IPR011747	Conserved hypothetical protein CHP02241	Family
G [auth 1A], H [auth 1B], I [auth 1C], J [auth 1D], K [auth 1E], G [auth 1A], H [auth 1B], I [auth 1C], J [auth 1D], K [auth 1E], L [auth 1F], M [auth 1G], N [auth 1H], O [auth 1I], P [auth 1J], Q [auth 1K], R [auth 1L]	IPR010667	Bacteriophage T4, Gp19, tail tube	Family
A, B, C, D, E A, B, C, D, E, F	IPR025351	Pvc16, N-terminal	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.