Cryo-EM structure of the PlPVC1 central spike, 3-fold symmetrized (C3), in extended state
External Resource: Annotation
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| C [auth 8C] | IBR | e9qgm8C1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: IBR | ECOD (v295.2) |
| B [auth 8B] | IBR | e9qgm8B1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: IBR | ECOD (v295.2) |
| A [auth 8A] | Integrase_Zn | e9qgm8A1 | A: alpha arrays | X: Hypothetical protein YqbG-like | H: Hypothetical protein YqbG-like | T: alpha/beta-Hydrolases | F: Integrase_Zn | ECOD (v295.2) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| A [auth 8A], B [auth 8B], C [auth 8C] | PF04717 | Type VI secretion system/phage-baseplate injector OB domain (Phage_base_V) | Type VI secretion system/phage-baseplate injector OB domain | Family of bacterial and phage baseplate assembly proteins responsible for forming the small spike at the end of the tail or bacterial pathogenic needle-shaft [1]. This entry represents the OB fold part of the structure. This structure contains an unu ... | Domain |
| A [auth 8A], B [auth 8B], C [auth 8C] | PF05954 | Phage tail baseplate hub (GPD) (Phage_GPD) | Phage tail baseplate hub (GPD) | - | Family |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| A [auth 8A], B [auth 8B], C [auth 8C] | IPR006531 | Gp5/Type VI secretion system Vgr protein, OB-fold domain | Domain |
| A [auth 8A], B [auth 8B], C [auth 8C] | IPR037026 | Vgr protein, OB-fold domain superfamily | Homologous Superfamily |
| D [auth 6A], E [auth 6B], F [auth 6C] | IPR045459 | Protein of unknown function DUF5908 | Family |














