9QC6 | pdb_00009qc6

Structure of eIF2B decamer bound to (P)eIF2 alpha and Compound A-(S)

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Protein Modification Annotation

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Translation initiation factor eIF2B subunit alpha	translation factor activity translation initiation factor activity GTPase regulator activity enzyme regulator activity guanyl-nucleotide exchange factor activity nucleoside-triphosphatase regulator activity molecular function regulator activity identical protein binding protein binding binding	primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process translational initiation metabolic process cellular process protein metabolic process macromolecule metabolic process developmental process multicellular organismal process oligodendrocyte development primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process translational initiation metabolic process cellular process protein metabolic process macromolecule metabolic process developmental process multicellular organismal process oligodendrocyte development cellular developmental process cell development nervous system development glial cell development multicellular organism development neurogenesis central nervous system development gliogenesis oligodendrocyte differentiation glial cell differentiation cell differentiation anatomical structure development system development response to stimulus response to hormone response to chemical response to endogenous stimulus response to peptide hormone response to oxygen-containing compound response to nitrogen compound cellular response to stimulus immune response-regulating cell surface receptor signaling pathway regulation of cellular process signaling positive regulation of biological process cell communication positive regulation of response to stimulus immune response-activating signaling pathway immune response-regulating signaling pathway positive regulation of immune response regulation of immune system process signal transduction positive regulation of immune system process regulation of biological process cell surface receptor signaling pathway immune response-activating cell surface receptor signaling pathway immune response biological regulation T cell receptor signaling pathway regulation of response to stimulus immune system process regulation of immune response antigen receptor-mediated signaling pathway activation of immune response cytoplasmic translation cytoplasmic translational initiation response to stress response to heat response to abiotic stimulus response to temperature stimulus response to hexose response to monosaccharide response to carbohydrate response to glucose	cellular anatomical structure membrane intracellular anatomical structure cytoplasm cytosol protein-containing complex eukaryotic translation initiation factor 2B complex guanyl-nucleotide exchange factor complex intracellular protein-containing complex cell periphery plasma membrane
C, D	Translation initiation factor eIF2B subunit beta	translation factor activity translation initiation factor activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding translation factor activity translation initiation factor activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding GTPase regulator activity enzyme regulator activity guanyl-nucleotide exchange factor activity nucleoside-triphosphatase regulator activity molecular function regulator activity guanyl nucleotide binding GTP binding guanyl ribonucleotide binding	primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process translational initiation metabolic process cellular process protein metabolic process macromolecule metabolic process developmental process multicellular organismal process oligodendrocyte development primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process translational initiation metabolic process cellular process protein metabolic process macromolecule metabolic process developmental process multicellular organismal process oligodendrocyte development cellular developmental process cell development nervous system development glial cell development multicellular organism development neurogenesis central nervous system development gliogenesis oligodendrocyte differentiation glial cell differentiation cell differentiation anatomical structure development system development gonad development reproductive system development reproductive process female gonad development sex differentiation animal organ development female sex differentiation development of primary female sexual characteristics developmental process involved in reproduction development of primary sexual characteristics reproductive structure development ovarian follicle development response to stimulus response to hormone response to chemical response to endogenous stimulus response to peptide hormone response to oxygen-containing compound response to nitrogen compound cellular response to stimulus immune response-regulating cell surface receptor signaling pathway regulation of cellular process signaling positive regulation of biological process cell communication positive regulation of response to stimulus immune response-activating signaling pathway immune response-regulating signaling pathway positive regulation of immune response regulation of immune system process signal transduction positive regulation of immune system process regulation of biological process cell surface receptor signaling pathway immune response-activating cell surface receptor signaling pathway immune response biological regulation T cell receptor signaling pathway regulation of response to stimulus immune system process regulation of immune response antigen receptor-mediated signaling pathway activation of immune response regulation of primary metabolic process post-transcriptional regulation of gene expression regulation of biosynthetic process regulation of translational initiation regulation of protein metabolic process regulation of macromolecule metabolic process regulation of gene expression regulation of translation regulation of macromolecule biosynthetic process regulation of metabolic process cytoplasmic translation cytoplasmic translational initiation myelination axon ensheathment ensheathment of neurons response to stress response to heat response to abiotic stimulus response to temperature stimulus response to hexose response to monosaccharide response to carbohydrate response to glucose	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex eukaryotic translation initiation factor 2B complex guanyl-nucleotide exchange factor complex intracellular protein-containing complex
E, F	Translation initiation factor eIF-2B subunit gamma	translation factor activity translation initiation factor activity GTPase regulator activity enzyme regulator activity guanyl-nucleotide exchange factor activity nucleoside-triphosphatase regulator activity molecular function regulator activity	primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process translational initiation metabolic process cellular process protein metabolic process macromolecule metabolic process developmental process multicellular organismal process oligodendrocyte development primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process translational initiation metabolic process cellular process protein metabolic process macromolecule metabolic process developmental process multicellular organismal process oligodendrocyte development cellular developmental process cell development nervous system development glial cell development multicellular organism development neurogenesis central nervous system development gliogenesis oligodendrocyte differentiation glial cell differentiation cell differentiation anatomical structure development system development response to stimulus response to hormone response to chemical response to endogenous stimulus response to peptide hormone response to oxygen-containing compound response to nitrogen compound cellular response to stimulus immune response-regulating cell surface receptor signaling pathway regulation of cellular process signaling positive regulation of biological process cell communication positive regulation of response to stimulus immune response-activating signaling pathway immune response-regulating signaling pathway positive regulation of immune response regulation of immune system process signal transduction positive regulation of immune system process regulation of biological process cell surface receptor signaling pathway immune response-activating cell surface receptor signaling pathway immune response biological regulation T cell receptor signaling pathway regulation of response to stimulus immune system process regulation of immune response antigen receptor-mediated signaling pathway activation of immune response cytoplasmic translation cytoplasmic translational initiation response to stress response to heat response to abiotic stimulus response to temperature stimulus response to hexose response to monosaccharide response to carbohydrate response to glucose	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex eukaryotic translation initiation factor 2B complex guanyl-nucleotide exchange factor complex intracellular protein-containing complex
G, H	Translation initiation factor eIF-2B subunit delta	translation factor activity translation initiation factor activity protein binding binding translation initiation factor binding GTPase regulator activity enzyme regulator activity guanyl-nucleotide exchange factor activity nucleoside-triphosphatase regulator activity molecular function regulator activity	primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process translational initiation metabolic process cellular process protein metabolic process macromolecule metabolic process developmental process multicellular organismal process oligodendrocyte development primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process translational initiation metabolic process cellular process protein metabolic process macromolecule metabolic process developmental process multicellular organismal process oligodendrocyte development cellular developmental process cell development nervous system development glial cell development multicellular organism development neurogenesis central nervous system development gliogenesis oligodendrocyte differentiation glial cell differentiation cell differentiation anatomical structure development system development gonad development reproductive system development reproductive process female gonad development sex differentiation animal organ development female sex differentiation development of primary female sexual characteristics developmental process involved in reproduction development of primary sexual characteristics reproductive structure development ovarian follicle development response to stimulus response to hormone response to chemical response to endogenous stimulus response to peptide hormone response to oxygen-containing compound response to nitrogen compound cellular response to stimulus immune response-regulating cell surface receptor signaling pathway regulation of cellular process signaling positive regulation of biological process cell communication positive regulation of response to stimulus immune response-activating signaling pathway immune response-regulating signaling pathway positive regulation of immune response regulation of immune system process signal transduction positive regulation of immune system process regulation of biological process cell surface receptor signaling pathway immune response-activating cell surface receptor signaling pathway immune response biological regulation T cell receptor signaling pathway regulation of response to stimulus immune system process regulation of immune response antigen receptor-mediated signaling pathway activation of immune response cytoplasmic translation cytoplasmic translational initiation myelination axon ensheathment ensheathment of neurons regulation of biosynthetic process regulation of protein metabolic process regulation of macromolecule metabolic process regulation of primary metabolic process post-transcriptional regulation of gene expression regulation of gene expression regulation of translation regulation of macromolecule biosynthetic process regulation of metabolic process response to stress response to heat response to abiotic stimulus response to temperature stimulus response to hexose response to monosaccharide response to carbohydrate response to glucose	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex eukaryotic translation initiation factor 2B complex guanyl-nucleotide exchange factor complex intracellular protein-containing complex
I, J	Translation initiation factor eIF2B subunit epsilon	translation factor activity translation initiation factor activity protein binding binding translation initiation factor binding GTPase regulator activity enzyme regulator activity guanyl-nucleotide exchange factor activity nucleoside-triphosphatase regulator activity molecular function regulator activity	primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process translational initiation metabolic process cellular process protein metabolic process macromolecule metabolic process developmental process multicellular organismal process head development primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process translational initiation metabolic process cellular process protein metabolic process macromolecule metabolic process developmental process multicellular organismal process head development forebrain development animal organ development brain development nervous system development pallium development multicellular organism development central nervous system development anatomical structure development telencephalon development hippocampus development limbic system development system development response to stimulus response to hormone response to chemical response to endogenous stimulus response to peptide hormone response to oxygen-containing compound response to nitrogen compound cellular response to stimulus immune response-regulating cell surface receptor signaling pathway regulation of cellular process signaling positive regulation of biological process cell communication positive regulation of response to stimulus immune response-activating signaling pathway immune response-regulating signaling pathway positive regulation of immune response regulation of immune system process signal transduction positive regulation of immune system process regulation of biological process cell surface receptor signaling pathway immune response-activating cell surface receptor signaling pathway immune response biological regulation T cell receptor signaling pathway regulation of response to stimulus immune system process regulation of immune response antigen receptor-mediated signaling pathway activation of immune response positive regulation of programmed cell death regulation of apoptotic process regulation of programmed cell death cell death positive regulation of apoptotic process apoptotic process programmed cell death positive regulation of cellular process cytoplasmic translation cytoplasmic translational initiation response to hexose response to monosaccharide response to carbohydrate response to glucose cellular developmental process astrocyte differentiation cell development glial cell development neurogenesis astrocyte development gliogenesis glial cell differentiation cell differentiation oligodendrocyte development oligodendrocyte differentiation gonad development reproductive system development reproductive process female gonad development sex differentiation female sex differentiation development of primary female sexual characteristics developmental process involved in reproduction development of primary sexual characteristics reproductive structure development ovarian follicle development myelination axon ensheathment ensheathment of neurons positive regulation of protein metabolic process positive regulation of translation positive regulation of macromolecule biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of biosynthetic process regulation of translational initiation regulation of protein metabolic process regulation of macromolecule metabolic process regulation of gene expression positive regulation of gene expression regulation of translation regulation of macromolecule biosynthetic process positive regulation of translational initiation regulation of metabolic process response to stress response to heat response to abiotic stimulus response to temperature stimulus cellular response to stress response to endoplasmic reticulum stress	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex eukaryotic translation initiation factor 2B complex guanyl-nucleotide exchange factor complex intracellular protein-containing complex membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle
K	Eukaryotic translation initiation factor 2 subunit 1	translation factor activity translation initiation factor activity RNA binding binding nucleic acid binding ribonucleoprotein complex binding protein-containing complex binding ribosome binding	cellular response to stimulus cellular response to metal ion response to manganese-induced endoplasmic reticulum stress response to stimulus cellular response to manganese ion cellular response to chemical stress cellular response to chemical stimulus cellular response to stress response to metal ion response to stress response to chemical cellular process response to manganese ion response to endoplasmic reticulum stress cellular response to stimulus cellular response to metal ion response to manganese-induced endoplasmic reticulum stress response to stimulus cellular response to manganese ion cellular response to chemical stress cellular response to chemical stimulus cellular response to stress response to metal ion response to stress response to chemical cellular process response to manganese ion response to endoplasmic reticulum stress primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process translational initiation metabolic process protein metabolic process macromolecule metabolic process regulation of cellular process negative regulation of biological process regulation of primary metabolic process post-transcriptional regulation of gene expression negative regulation of translation negative regulation of cellular process negative regulation of protein metabolic process negative regulation of macromolecule metabolic process negative regulation of translational initiation in response to stress regulation of biosynthetic process regulation of biological process regulation of translational initiation regulation of protein metabolic process negative regulation of metabolic process biological regulation negative regulation of translational initiation regulation of macromolecule metabolic process regulation of gene expression negative regulation of gene expression negative regulation of biosynthetic process regulation of translation negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process regulation of metabolic process cellular response to heat response to heat response to abiotic stimulus response to temperature stimulus regulation of translation in response to stress regulation of translational initiation in response to stress regulation of translation in response to endoplasmic reticulum stress positive regulation of epithelial cell apoptotic process positive regulation of programmed cell death regulation of epithelial cell apoptotic process regulation of type B pancreatic cell apoptotic process regulation of apoptotic process positive regulation of biological process regulation of programmed cell death cell death positive regulation of apoptotic process epithelial cell apoptotic process positive regulation of type B pancreatic cell apoptotic process type B pancreatic cell apoptotic process apoptotic process programmed cell death positive regulation of cellular process response to oxidative stress cellular response to oxidative stress cellular response to topologically incorrect protein signaling PERK-mediated unfolded protein response endoplasmic reticulum unfolded protein response cellular response to unfolded protein response to unfolded protein intracellular signal transduction integrated stress response signaling cell communication response to topologically incorrect protein intracellular signaling cassette ER-nucleus signaling pathway signal transduction response to light stimulus cellular response to radiation response to UV cellular response to environmental stimulus cellular response to light stimulus response to radiation cellular response to abiotic stimulus cellular response to UV response to acid chemical response to kainic acid response to oxygen-containing compound response to nitrogen compound response to amino acid cellular component biogenesis cellular component organization organelle organization cellular component assembly stress granule assembly organelle assembly membraneless organelle assembly cellular component organization or biogenesis response to nutrient levels cellular response to amino acid starvation cellular response to starvation cellular response to nutrient levels response to amino acid starvation response to starvation mitophagy catabolic process macroautophagy autophagy autophagy of mitochondrion process utilizing autophagic mechanism HRI-mediated signaling	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle cytoplasmic ribonucleoprotein granule intracellular membraneless organelle ribonucleoprotein granule membraneless organelle supramolecular complex cytoplasmic stress granule membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle cytoplasmic ribonucleoprotein granule intracellular membraneless organelle ribonucleoprotein granule membraneless organelle supramolecular complex cytoplasmic stress granule membrane extracellular exosome extracellular vesicle extracellular organelle extracellular region vesicle extracellular membrane-bounded organelle cytosol protein-containing complex eukaryotic translation initiation factor 2 complex ribonucleoprotein complex translation initiation ternary complex glial cell projection cell projection glial limiting end-foot plasma membrane bounded cell projection astrocyte end-foot astrocyte projection synapse cell junction eukaryotic 48S preinitiation complex cytosolic translation preinitiation complex nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR000649	Initiation factor 2B-related	Family
A, B	IPR051501	Eukaryotic initiation factor 2B subunits alpha/beta/delta	Family
A, B	IPR042529	Initiation factor 2B-like, C-terminal	Homologous Superfamily
A, B	IPR037171	NagB/RpiA transferase-like	Homologous Superfamily
A, B	IPR042528	Translation initiation factor eIF-2B subunit alpha, N-terminal	Homologous Superfamily
C, D	IPR051855	Eukaryotic initiation factor 2B subunit beta	Family
C, D	IPR000649	Initiation factor 2B-related	Family
C, D	IPR042529	Initiation factor 2B-like, C-terminal	Homologous Superfamily
C, D	IPR037171	NagB/RpiA transferase-like	Homologous Superfamily
E, F	IPR056764	EIF2B subunit epsilon/gamma, LbH domain	Domain
E, F	IPR051960	Eukaryotic Initiation Factor 2B Subunit Gamma	Family
E, F	IPR005835	Nucleotidyl transferase domain	Domain
E, F	IPR029044	Nucleotide-diphospho-sugar transferases	Homologous Superfamily
G, H	IPR000649	Initiation factor 2B-related	Family
G, H	IPR042529	Initiation factor 2B-like, C-terminal	Homologous Superfamily
G, H	IPR037171	NagB/RpiA transferase-like	Homologous Superfamily
I, J	IPR044123	Translation initiation factor eIF-2B subunit epsilon, W2 domain	Domain
I, J	IPR016024	Armadillo-type fold	Homologous Superfamily
I, J	IPR056764	EIF2B subunit epsilon/gamma, LbH domain	Domain
I, J	IPR003307	W2 domain	Domain
I, J	IPR035543	Translation initiation factor eIF-2B subunit epsilon, N-terminal	Domain
I, J	IPR011004	Trimeric LpxA-like superfamily	Homologous Superfamily
I, J	IPR029044	Nucleotide-diphospho-sugar transferases	Homologous Superfamily
I, J	IPR051956	eIF2B Complex Subunit Epsilon	Family
K	IPR044126	IF2a, S1-like domain	Domain
K	IPR024054	Translation initiation factor 2, alpha subunit, middle domain superfamily	Homologous Superfamily
K	IPR024055	Translation initiation factor 2, alpha subunit, C-terminal	Homologous Superfamily
K	IPR003029	S1 domain	Domain
K	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
K	IPR011488	Translation initiation factor 2, alpha subunit	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	: Q14232	leukoencephalopathy with vanishing white matter leukodystrophy Adenocarcinoma of Lung ovarian cancer glioblastoma lung adenocarcinoma ovarioleukodystrophy lung cancer
C, D	: P49770	leukoencephalopathy with vanishing white matter leukodystrophy Ataxias, Hereditary heart disease ovarioleukodystrophy
E, F	: Q9NR50	leukoencephalopathy with vanishing white matter leukodystrophy Ataxias, Hereditary ovarioleukodystrophy
G, H	: Q9UI10	leukoencephalopathy with vanishing white matter leukodystrophy Adenocarcinoma of Lung lung adenocarcinoma ovarian cancer lung cancer ovarioleukodystrophy Crohn disease osteosarcoma
I, J	: Q13144	leukodystrophy leukoencephalopathy with vanishing white matter Adenocarcinoma of Lung esophageal adenocarcinoma lung adenocarcinoma ovarian cancer malignant mesothelioma ovarioleukodystrophy osteosarcoma
K	: P05198	osteosarcoma status epilepticus Alzheimer disease Cognition Disorders ovarian cancer lung cancer psoriasis gastric cancer hepatocellular carcinoma malignant pancreatic neoplasm plasma cell myeloma schizophrenia breast cancer exocrine pancreatic carcinoma gastric carcinoma osteosarcoma status epilepticus Alzheimer disease Cognition Disorders ovarian cancer lung cancer psoriasis gastric cancer hepatocellular carcinoma malignant pancreatic neoplasm plasma cell myeloma schizophrenia breast cancer exocrine pancreatic carcinoma gastric carcinoma IgA glomerulonephritis

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
K	SEP	Parent Component: SER : AA0037 : O-phospho-L-serine MOD:00046

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.