9Q2I | pdb_00009q2i

Rad55-Rad57-SHU homologous recombination complex


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
CSCOP2B SuperfamilyRecA-like P-loop NTPases 8093037 3002019 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyRecA-like P-loop NTPases 8093040 3002019 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyHelix-hairpin-helix tandem 8056637 3000163 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyRecA-like P-loop NTPases 8056639 3002019 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyHelix-hairpin-helix tandem 8056637 3000163 SCOP2B (2022-06-29)
ISCOP2B SuperfamilyRecA-like P-loop NTPases 8056639 3002019 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF06745KaiC (ATPase)KaiCThis family is in the P-loop NTPase superfamily and is found in archaea, bacteria and eukaryotes. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein as ...This family is in the P-loop NTPase superfamily and is found in archaea, bacteria and eukaryotes. More than one copy is sometimes found in each protein. This family includes KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria [1].
Domain
PF08423Rad51 (Rad51)Rad51Rad51 is a DNA repair and recombination protein and is a homologue of the bacterial ATPase RecA protein. Domain
PF16834Shu complex component Csm2, DNA-binding (CSM2)Shu complex component Csm2, DNA-bindingCSM2 is one of the components of the yeast Shu complex that maintains genomic stability during replication. CSM2 complexes first with Psy3, and their L2 loops confer the DNA-binding activity to the Shu complex [1,2]. The Shu complex binds to recombi ...CSM2 is one of the components of the yeast Shu complex that maintains genomic stability during replication. CSM2 complexes first with Psy3, and their L2 loops confer the DNA-binding activity to the Shu complex [1,2]. The Shu complex binds to recombination sites and is required for Rad51 assembly and function during meiosis. The heterodimer of Psy3-Csm2 stabilises the Rad51-single-stranded DNA complex independently of nucleotide cofactor because Psy3-Csm2 is a structural mimic of the Rad51-dimer [3].
Domain
PF16836Shu complex component Psy3, DNA-binding description (PSY3)Shu complex component Psy3, DNA-binding descriptionPSY3 is one of the components of the yeast Shu complex that maintains genomic stability during replication. Psy3 complexes first with Cms2, and their L2 loops confer the DNA-binding activity to the Shu complex [1,2]. The Shu complex binds to recombi ...PSY3 is one of the components of the yeast Shu complex that maintains genomic stability during replication. Psy3 complexes first with Cms2, and their L2 loops confer the DNA-binding activity to the Shu complex [1,2]. The Shu complex binds to recombination sites and is required for Rad51 assembly and function during meiosis. The heterodimer of Psy3-Csm2 stabilises the Rad51-single-stranded DNA complex independently of nucleotide cofactor because Psy3-Csm2 is a structural mimic of the Rad51-dimer [3].
Domain
G, I
PF08423Rad51 (Rad51)Rad51Rad51 is a DNA repair and recombination protein and is a homologue of the bacterial ATPase RecA protein. Domain
G, I
PF14520SAM-like Helix-hairpin-helix tandem (HHH_5)SAM-like Helix-hairpin-helix tandemThis entry represents a SAM-like helix-hairpin-helix domain found in functionally diverse proteins involved in DNA repair, recombination, transcription termination etc. This domain has a fold that is structurally similar to SAM domains. It is compose ...This entry represents a SAM-like helix-hairpin-helix domain found in functionally diverse proteins involved in DNA repair, recombination, transcription termination etc. This domain has a fold that is structurally similar to SAM domains. It is composed of two helix-hairpin-helix motifs which are known DNA interaction motifs.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Methylated-DNA--protein-cysteine methyltransferase,DNA repair protein RAD55
DNA repair protein RAD57
Chromosome segregation in meiosis protein 2
Platinum sensitivity protein 3
Suppressor of HU sensitivity involved in recombination protein 1-
Suppressor of hydroxyurea sensitivity protein 2-
G, I
DNA repair protein RAD51
ssDNA (12-mer)---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR008332Methylguanine DNA methyltransferase, ribonuclease-like domainDomain
IPR001497Methylated-DNA-[protein]-cysteine S-methyltransferase, active siteActive Site
IPR036217Methylated DNA-protein cysteine methyltransferase, DNA binding domainHomologous Superfamily
IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
IPR036631Methylated DNA-protein cysteine methyltransferase domain superfamilyHomologous Superfamily
IPR014048Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA bindingDomain
IPR014774KaiC-like domainDomain
IPR020588DNA recombination and repair protein RecA-like, ATP-binding domainDomain
IPR052093Homologous Recombination Repair MediatorFamily
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR020588DNA recombination and repair protein RecA-like, ATP-binding domainDomain
IPR013632Rad51-like, C-terminalDomain
IPR003593AAA+ ATPase domainDomain
IPR047348DNA repair protein XRCC3-like, C-terminalDomain
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR031783Chromosome segregation in meiosis protein 2Family
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR031779Shu complex, component Psy3Family
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
G, I
IPR020587DNA recombination and repair protein RecA, monomer-monomer interfaceDomain
G, I
IPR003593AAA+ ATPase domainDomain
G, I
IPR060101SAM-like helix-hairpin-helix tandemDomain
G, I
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
G, I
IPR011941DNA recombination/repair protein Rad51Family
G, I
IPR016467DNA recombination and repair protein, RecA-likeFamily
G, I
IPR020588DNA recombination and repair protein RecA-like, ATP-binding domainDomain
G, I
IPR013632Rad51-like, C-terminalDomain
G, I
IPR010995DNA repair Rad51/transcription factor NusA, alpha-helicalHomologous Superfamily