Annotations: 9PZC

HCMV trimer in complex with G1L (II), G1L (A), B5L, C4K, B1K, A7K, A12K, and C5K Fabs

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
H	PF07686	Immunoglobulin V-set domain (V-set)	Immunoglobulin V-set domain	This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others.	Domain
F	PF07686	Immunoglobulin V-set domain (V-set)	Immunoglobulin V-set domain	This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others.	Domain
E	PF07686	Immunoglobulin V-set domain (V-set)	Immunoglobulin V-set domain	This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others.	Domain
C	PF07686	Immunoglobulin V-set domain (V-set)	Immunoglobulin V-set domain	This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others.	Domain
N	PF07686	Immunoglobulin V-set domain (V-set)	Immunoglobulin V-set domain	This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others.	Domain
K	PF07686	Immunoglobulin V-set domain (V-set)	Immunoglobulin V-set domain	This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others.	Domain
J	PF07686	Immunoglobulin V-set domain (V-set)	Immunoglobulin V-set domain	This domain is found in antibodies as well as neural protein P0 and CTL4 amongst others.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
I	A12K Fab light chain	-	-	-
H	Immunoglobulin heavy variable 4-34	binding antigen binding	adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains lymphocyte mediated immunity response to stimulus immune response immune system process B cell mediated immunity leukocyte mediated immunity immunoglobulin mediated immune response adaptive immune response immune effector process	cell periphery cellular anatomical structure plasma membrane membrane protein-containing complex immunoglobulin complex extracellular region
G	A12K Fab heavy chain	-	-	-
F	Immunoglobulin kappa variable 3-20	binding antigen binding	response to stimulus immune response immune system process adaptive immune response humoral immune response biological process involved in interspecies interaction between organisms response to other organism defense response antibacterial humoral response defense response to symbiont response to external stimulus antimicrobial humoral response response to biotic stimulus defense response to bacterium response to stimulus immune response immune system process adaptive immune response humoral immune response biological process involved in interspecies interaction between organisms response to other organism defense response antibacterial humoral response defense response to symbiont response to external stimulus antimicrobial humoral response response to biotic stimulus defense response to bacterium defense response to other organism response to stress response to bacterium response to external biotic stimulus multicellular organismal process renal system process system process glomerular filtration renal filtration	cellular anatomical structure extracellular region blood microparticle IgA immunoglobulin complex, circulating protein-containing complex secretory IgA immunoglobulin complex IgA immunoglobulin complex extracellular protein-containing complex polymeric IgA immunoglobulin complex immunoglobulin complex, circulating immunoglobulin complex extracellular exosome membrane-bounded organelle extracellular vesicle cellular anatomical structure extracellular region blood microparticle IgA immunoglobulin complex, circulating protein-containing complex secretory IgA immunoglobulin complex IgA immunoglobulin complex extracellular protein-containing complex polymeric IgA immunoglobulin complex immunoglobulin complex, circulating immunoglobulin complex extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle organelle vesicle extracellular membrane-bounded organelle monomeric IgA immunoglobulin complex IgM immunoglobulin complex IgM immunoglobulin complex, circulating pentameric IgM immunoglobulin complex cell periphery plasma membrane membrane
E	Immunoglobulin heavy variable 1-46	binding antigen binding	adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains lymphocyte mediated immunity response to stimulus immune response immune system process B cell mediated immunity leukocyte mediated immunity immunoglobulin mediated immune response adaptive immune response immune effector process	cell periphery cellular anatomical structure plasma membrane membrane protein-containing complex immunoglobulin complex extracellular region
D	G1L Fab heavy chain	-	-	-
C	Immunoglobulin lambda variable 1-51	binding antigen binding	response to stimulus immune response immune system process adaptive immune response	cellular anatomical structure extracellular region extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle organelle vesicle extracellular membrane-bounded organelle cell periphery plasma membrane membrane protein-containing complex immunoglobulin complex
B	Envelope glycoprotein L	-	membrane organization cellular component organization membrane fusion fusion of virus membrane with host plasma membrane viral process cellular process cellular component organization or biogenesis membrane fusion involved in viral entry into host cell virion attachment to host cell biological process involved in interspecies interaction between organisms receptor-mediated virion attachment to host cell adhesion of symbiont to host cell entry receptor-mediated virion attachment to host cell viral life cycle membrane organization cellular component organization membrane fusion fusion of virus membrane with host plasma membrane viral process cellular process cellular component organization or biogenesis membrane fusion involved in viral entry into host cell virion attachment to host cell biological process involved in interspecies interaction between organisms receptor-mediated virion attachment to host cell adhesion of symbiont to host cell entry receptor-mediated virion attachment to host cell viral life cycle adhesion of symbiont to host biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host	virion component viral membrane viral envelope host cell plasma membrane host cellular component cellular anatomical structure host cell part host cell membrane other organism part virion membrane host intracellular part host cell cytoplasm host cell Golgi apparatus host intracellular region virion component viral membrane viral envelope host cell plasma membrane host cellular component cellular anatomical structure host cell part host cell membrane other organism part virion membrane host intracellular part host cell cytoplasm host cell Golgi apparatus host intracellular region host cell cytoplasm part
P	C4K Fab light chain	-	-	-
O	C4K Fab heavy chain	-	-	-
N	Immunoglobulin heavy variable 1-46	binding antigen binding	adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains lymphocyte mediated immunity response to stimulus immune response immune system process B cell mediated immunity leukocyte mediated immunity immunoglobulin mediated immune response adaptive immune response immune effector process	cell periphery cellular anatomical structure plasma membrane membrane protein-containing complex immunoglobulin complex extracellular region
M	C5K Fab light chain	-	-	-
L	B5L Fab light chain	-	-	-
K	Immunoglobulin heavy variable 4-39	binding antigen binding	adaptive immune response based on somatic recombination of immune receptors built from immunoglobulin superfamily domains lymphocyte mediated immunity response to stimulus immune response immune system process B cell mediated immunity leukocyte mediated immunity immunoglobulin mediated immune response adaptive immune response immune effector process	cell periphery cellular anatomical structure plasma membrane membrane protein-containing complex immunoglobulin complex extracellular region
J	Immunoglobulin kappa variable 1-39	binding antigen binding	response to stimulus immune response immune system process adaptive immune response	cellular anatomical structure extracellular region blood microparticle extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle organelle vesicle extracellular membrane-bounded organelle cell periphery plasma membrane membrane protein-containing complex cellular anatomical structure extracellular region blood microparticle extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle organelle vesicle extracellular membrane-bounded organelle cell periphery plasma membrane membrane protein-containing complex immunoglobulin complex
A	Envelope glycoprotein H	-	membrane organization cellular component organization membrane fusion fusion of virus membrane with host plasma membrane viral process cellular process cellular component organization or biogenesis membrane fusion involved in viral entry into host cell biological process involved in interspecies interaction between organisms symbiont entry into host cell symbiont entry into host viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction	virion component viral membrane viral envelope virion membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
H	IPR050199	Immunoglobulin Heavy Variable	Family
H	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
H	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
H	IPR013106	Immunoglobulin V-set domain	Domain
H	IPR007110	Immunoglobulin-like domain	Domain
F	IPR050150	Immunoglobulin Variable Light Chain	Family
F	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
F	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
F	IPR013106	Immunoglobulin V-set domain	Domain
F	IPR003599	Immunoglobulin domain subtype	Domain
F	IPR007110	Immunoglobulin-like domain	Domain
E	IPR050199	Immunoglobulin Heavy Variable	Family
E	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
E	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
E	IPR013106	Immunoglobulin V-set domain	Domain
E	IPR007110	Immunoglobulin-like domain	Domain
C	IPR050150	Immunoglobulin Variable Light Chain	Family
C	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
C	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
C	IPR013106	Immunoglobulin V-set domain	Domain
C	IPR003599	Immunoglobulin domain subtype	Domain
C	IPR007110	Immunoglobulin-like domain	Domain
B	IPR002689	Cytomegalovirus glycoprotein L	Family
N	IPR050199	Immunoglobulin Heavy Variable	Family
N	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
N	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
N	IPR013106	Immunoglobulin V-set domain	Domain
N	IPR007110	Immunoglobulin-like domain	Domain
K	IPR050199	Immunoglobulin Heavy Variable	Family
K	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
K	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
K	IPR013106	Immunoglobulin V-set domain	Domain
K	IPR007110	Immunoglobulin-like domain	Domain
J	IPR050150	Immunoglobulin Variable Light Chain	Family
J	IPR036179	Immunoglobulin-like domain superfamily	Homologous Superfamily
J	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
J	IPR013106	Immunoglobulin V-set domain	Domain
J	IPR003599	Immunoglobulin domain subtype	Domain
J	IPR007110	Immunoglobulin-like domain	Domain
A	IPR038172	Herpesvirus glycoprotein H, C-terminal domain superfamily	Homologous Superfamily
A	IPR003493	Herpesvirus glycoprotein H	Family
A	IPR035305	Herpesvirus glycoprotein H, C-terminal	Domain

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9PZC | pdb_00009pzc

HCMV trimer in complex with G1L (II), G1L (A), B5L, C4K, B1K, A7K, A12K, and C5K Fabs

External Resource: Annotation

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage