9PXI | pdb_00009pxi

Cryo-EM structure of BAM from P. aeruginosa PAO1 in complex with Pyocin L1


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF04355Outer membrane protein assembly factor BamE domain (BamE)Outer membrane protein assembly factor BamE domainThis domain is found in bacterial outer membrane lipoproteins probably involved in maintaining the structural integrity of the cell envelope [1], including Outer membrane protein assembly factor BamE from Vibrio cholerae (also known as SmpA). The lip ...This domain is found in bacterial outer membrane lipoproteins probably involved in maintaining the structural integrity of the cell envelope [1], including Outer membrane protein assembly factor BamE from Vibrio cholerae (also known as SmpA). The lipid attachment site is a conserved N terminal cysteine residue. Sometimes found adjacent to the OmpA domain (Pfam:PF00691).
Domain
D [auth A]PF07244Surface antigen variable number repeat (POTRA)Surface antigen variable number repeatThis family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by Pfam:PF01103. The alignment centres on a -GY- or -GF- motif. Some members ...This family is found primarily in bacterial surface antigens, normally as variable number repeats at the N-terminus. The C-terminus of these proteins is normally represented by Pfam:PF01103. The alignment centres on a -GY- or -GF- motif. Some members of this family are found in the mitochondria. It is predicted to have a mixed alpha/beta secondary structure.
Domain
D [auth A]PF01103Omp85 superfamily domain (Omp85)Omp85 superfamily domainThe Omp85 protein superfamily contains bacterial outer membrane proteins, which can function as protein translocases or as membrane protein assembly factors [1]. The family includes the membrane bound beta barrel of proteins such as BamA and TamA fro ...The Omp85 protein superfamily contains bacterial outer membrane proteins, which can function as protein translocases or as membrane protein assembly factors [1]. The family includes the membrane bound beta barrel of proteins such as BamA and TamA from E. coli.
Domain
C [auth B]PF13360Outer membrane protein assembly factor BamB (PQQ_2)Outer membrane protein assembly factor BamB- Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Pyocin L1- - -
Outer membrane protein assembly factor BamE
D [auth A]Outer membrane protein assembly factor BamA-
C [auth B]Outer membrane protein assembly factor BamB-
B [auth C]Outer membrane protein assembly factor BamC- - -
A [auth D]Outer membrane protein assembly factor BamD-