9OZH | pdb_00009ozh

Cryo-EM structure of 1:2:1 ROS1/NEL/NICOL holo-complex, conformation 2.

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth B], B [auth C]	PF00093	von Willebrand factor type C domain (VWC)	von Willebrand factor type C domain	The high cutoff was used to prevent overlap with Pfam:PF00094.	Domain
A [auth B], B [auth C]	PF02210	Laminin G domain (Laminin_G_2)	Laminin G domain	This family includes the Thrombospondin N-terminal-like domain, a Laminin G subfamily.	Domain
A [auth B], B [auth C]	PF07645	Calcium-binding EGF domain (EGF_CA)	Calcium-binding EGF domain		Domain
A [auth B], B [auth C]	PF12947	EGF domain (EGF_3)	EGF domain	This family includes a variety of EGF-like domain homologues. This family includes the C-terminal domain of the malaria parasite MSP1 protein [1].	Domain
D	PF00041	Fibronectin type III domain (fn3)	Fibronectin type III domain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B], B [auth C]	Protein NEL	cation binding ion binding binding calcium ion binding metal ion binding small molecule binding protein binding kinase binding protein kinase C binding enzyme binding protein kinase binding heparin binding glycosaminoglycan binding carbohydrate derivative binding cation binding ion binding binding calcium ion binding metal ion binding small molecule binding protein binding kinase binding protein kinase C binding enzyme binding protein kinase binding heparin binding glycosaminoglycan binding carbohydrate derivative binding sulfur compound binding identical protein binding	sexual reproduction reproductive process fertilization cell population proliferation cellular process developmental process stem cell development neural crest cell differentiation cellular developmental process animal organ development neural crest cell development cell development mesenchyme development tissue development sexual reproduction reproductive process fertilization cell population proliferation cellular process developmental process stem cell development neural crest cell differentiation cellular developmental process animal organ development neural crest cell development cell development mesenchyme development tissue development mesenchymal cell migration stem cell differentiation cell differentiation ameboidal-type cell migration anatomical structure development cell migration mesenchymal cell differentiation cell motility neural crest cell migration regulation of biological process regulation of cellular process positive regulation of cell division biological regulation positive regulation of biological process cell division positive regulation of cellular process regulation of cell division commissural neuron axon guidance multicellular organismal process axonogenesis cell projection organization plasma membrane bounded cell projection morphogenesis neuron projection development cell morphogenesis cellular component organization neurogenesis multicellular organism development cell projection morphogenesis neuron differentiation neuron projection morphogenesis cellular component organization or biogenesis system development plasma membrane bounded cell projection organization axon guidance nervous system development axon development cell morphogenesis involved in neuron differentiation generation of neurons anatomical structure morphogenesis neuron projection guidance neuron development regulation of developmental process regulation of cell differentiation positive regulation of neuron differentiation positive regulation of developmental process positive regulation of cell differentiation regulation of neuron differentiation negative regulation of locomotion response to stimulus negative regulation of biological process negative regulation of chemotaxis taxis regulation of axon guidance chemotaxis negative regulation of cellular component organization regulation of cell projection organization response to external stimulus regulation of retinal ganglion cell axon guidance regulation of response to stimulus response to chemical regulation of locomotion negative regulation of response to external stimulus retinal ganglion cell axon guidance regulation of neuron projection development regulation of cellular component organization regulation of response to external stimulus negative regulation of retinal ganglion cell axon guidance negative regulation of axon guidance negative regulation of cellular process negative regulation of cell projection organization locomotion negative regulation of response to stimulus regulation of chemotaxis negative regulation of neuron projection development regulation of plasma membrane bounded cell projection organization	cellular anatomical structure intracellular anatomical structure cytoplasm
C [auth A]	NELL2-interacting cell ontogeny regulator 1	transferrin receptor binding protein binding binding signaling receptor binding mRNA 3'-UTR binding RNA binding nucleic acid binding mRNA binding	developmental process spermatogenesis sexual reproduction reproductive process multicellular organismal reproductive process developmental process involved in reproduction male gamete generation gamete generation regulation of cellular process negative regulation of biological process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process positive regulation of metabolic process developmental process spermatogenesis sexual reproduction reproductive process multicellular organismal reproductive process developmental process involved in reproduction male gamete generation gamete generation regulation of cellular process negative regulation of biological process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process positive regulation of metabolic process post-transcriptional regulation of gene expression regulation of RNA metabolic process negative regulation of nucleobase-containing compound metabolic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process regulation of biological quality RNA catabolic process mRNA stabilization mRNA catabolic process regulation of biological process negative regulation of metabolic process primary metabolic process nucleobase-containing compound catabolic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of macromolecule biosynthetic process nucleic acid catabolic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of metabolic process negative regulation of RNA metabolic process catabolic process positive regulation of biological process RNA metabolic process macromolecule catabolic process negative regulation of mRNA metabolic process 3'-UTR-mediated mRNA stabilization regulation of mRNA catabolic process positive regulation of biosynthetic process negative regulation of cellular process positive regulation of cellular process negative regulation of macromolecule metabolic process regulation of biosynthetic process negative regulation of catabolic process biological regulation negative regulation of mRNA catabolic process negative regulation of RNA catabolic process regulation of macromolecule metabolic process regulation of catabolic process gene expression mRNA metabolic process macromolecule biosynthetic process nucleic acid metabolic process regulation of mRNA stability RNA stabilization negative regulation of biosynthetic process positive regulation of gene expression regulation of RNA stability cellular process regulation of mRNA metabolic process	cellular anatomical structure intracellular anatomical structure perinuclear region of cytoplasm cytoplasm
D	Tyrosine-protein kinase receptor	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding molecular transducer activity catalytic activity, acting on a protein kinase activity protein kinase activity signaling receptor activity transferase activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups protein tyrosine kinase activity transmembrane receptor protein tyrosine kinase activity transmembrane receptor protein kinase activity transmembrane signaling receptor activity catalytic activity protein phosphatase binding phosphatase binding protein binding enzyme binding	developmental process epithelium development cellular developmental process cell development tissue development epithelial cell differentiation epithelial cell development columnar/cuboidal epithelial cell development cell differentiation anatomical structure development cellular process columnar/cuboidal epithelial cell differentiation cellular response to stimulus regulation of biological process developmental process epithelium development cellular developmental process cell development tissue development epithelial cell differentiation epithelial cell development columnar/cuboidal epithelial cell development cell differentiation anatomical structure development cellular process columnar/cuboidal epithelial cell differentiation cellular response to stimulus regulation of biological process regulation of signaling regulation of cellular process response to stimulus signaling biological regulation regulation of signal transduction regulation of MAPK cascade intracellular signal transduction cell communication regulation of intracellular signal transduction regulation of response to stimulus intracellular signaling cassette MAPK cascade regulation of cell communication ERK1 and ERK2 cascade signal transduction regulation of ERK1 and ERK2 cascade cell surface receptor signaling pathway cell surface receptor protein tyrosine kinase signaling pathway enzyme-linked receptor protein signaling pathway TOR signaling regulation of TOR signaling	protein-containing complex signaling receptor complex cell surface cellular anatomical structure intracellular anatomical structure perinuclear region of cytoplasm cytoplasm cell periphery plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth B], B [auth C]	IPR024731	NELL2-like, EGF domain	Domain
A [auth B], B [auth C]	IPR049883	NOTCH1, EGF-like calcium-binding domain	Domain
A [auth B], B [auth C]	IPR018097	EGF-like calcium-binding, conserved site	Conserved Site
A [auth B], B [auth C]	IPR001007	VWFC domain	Domain
A [auth B], B [auth C]	IPR013320	Concanavalin A-like lectin/glucanase domain superfamily	Homologous Superfamily
A [auth B], B [auth C]	IPR000742	EGF-like domain	Domain
A [auth B], B [auth C]	IPR001791	Laminin G domain	Domain
A [auth B], B [auth C]	IPR051586	Protein kinase C-binding NELL	Family
A [auth B], B [auth C]	IPR009030	Growth factor receptor cysteine-rich domain superfamily	Homologous Superfamily
A [auth B], B [auth C]	IPR001881	EGF-like calcium-binding domain	Domain
A [auth B], B [auth C]	IPR048287	Thrombospondin-like, N-terminal domain	Domain
A [auth B], B [auth C]	IPR000152	EGF-type aspartate/asparagine hydroxylation site	PTM
C [auth A]	IPR028147	NELL2-interacting cofactor for lumicrine signalling	Family
D	IPR011042	Six-bladed beta-propeller, TolB-like	Homologous Superfamily
D	IPR017441	Protein kinase, ATP binding site	Binding Site
D	IPR002011	Tyrosine-protein kinase, receptor class II, conserved site	Conserved Site
D	IPR003961	Fibronectin type III	Domain
D	IPR000033	LDLR class B repeat	Repeat
D	IPR008266	Tyrosine-protein kinase, active site	Active Site
D	IPR020635	Tyrosine-protein kinase, catalytic domain	Domain
D	IPR011009	Protein kinase-like domain superfamily	Homologous Superfamily
D	IPR013783	Immunoglobulin-like fold	Homologous Superfamily
D	IPR000719	Protein kinase domain	Domain
D	IPR050122	Receptor Tyrosine Kinase	Family
D	IPR001245	Serine-threonine/tyrosine-protein kinase, catalytic domain	Domain
D	IPR036116	Fibronectin type III superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
C [auth A]	: Q5BLP8	breast cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia interstitial cystitis transitional cell carcinoma ovarian cancer

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.