9NH0 | pdb_00009nh0

In situ cryo-EM structure of PR and DotA-IcmX of the Legionella Dot/Icm T4SS machine at C1 symmetry

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
VD [auth Ev]	RVP	e9nh0Ev1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
UD [auth Eu]	RVP	e9nh0Eu1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
TD [auth Et]	RVP	e9nh0Et1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
SD [auth Es]	RVP	e9nh0Es1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
RD [auth Er]	RVP	e9nh0Er1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
QD [auth Eq]	RVP	e9nh0Eq1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
PD [auth Ep]	RVP	e9nh0Ep1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
OD [auth Eo]	RVP	e9nh0Eo1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
ND [auth En]	RVP	e9nh0En1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
MD [auth Em]	RVP	e9nh0Em1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
LD [auth El]	RVP	e9nh0El1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
KE [auth Fk]	RVP	e9nh0Fk1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
KD [auth Ek]	RVP	e9nh0Ek1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
JE [auth Fj]	RVP	e9nh0Fj1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
JD [auth Ej]	RVP	e9nh0Ej1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
IE [auth Fi]	RVP	e9nh0Fi1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
ID [auth Ei]	RVP	e9nh0Ei1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
HE [auth Fh]	RVP	e9nh0Fh1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
HD [auth Eh]	RVP	e9nh0Eh1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
GE [auth Fg]	RVP	e9nh0Fg1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
GD [auth Eg]	RVP	e9nh0Eg1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
FD [auth Ef]	RVP	e9nh0Ef1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)
ED [auth Ee]	RVP	e9nh0Ee1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: RVP	ECOD (v294.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
BE [auth Fb], CE [auth Fc], DE [auth Fd], EE [auth Fe], FE [auth Ff]	DotA	-	-	-
AE [auth Fa], WD [auth Ew], XD [auth Ex], YD [auth Ey], ZD [auth Ez]	IcmX (IcmY)	-	-	-
ED [auth Ee], FD [auth Ef], GD [auth Eg], GE [auth Fg], HD [auth Eh], ED [auth Ee], FD [auth Ef], GD [auth Eg], GE [auth Fg], HD [auth Eh], HE [auth Fh], ID [auth Ei], IE [auth Fi], JD [auth Ej], JE [auth Fj], KD [auth Ek], KE [auth Fk], LD [auth El], MD [auth Em], ND [auth En], OD [auth Eo], PD [auth Ep], QD [auth Eq], RD [auth Er], SD [auth Es], TD [auth Et], UD [auth Eu], VD [auth Ev]	IcmE (DotG)	-	-	cellular anatomical structure membrane
BB [auth Cb], DA [auth Bd], DD [auth Ed], F [auth Af], FC [auth Df], BB [auth Cb], DA [auth Bd], DD [auth Ed], F [auth Af], FC [auth Df], HB [auth Ch], JA [auth Bj], L [auth Al], LC [auth Dl], NB [auth Cn], PA [auth Bp], R [auth Ar], RC [auth Dr], TB [auth Ct], VA [auth Bv], X [auth Ax], XC [auth Dx], ZB [auth Cz]	IcmK (DotH)	-	-	-
AB [auth Ca], CA [auth Bc], CD [auth Ec], E [auth Ae], EC [auth De], AB [auth Ca], CA [auth Bc], CD [auth Ec], E [auth Ae], EC [auth De], GB [auth Cg], IA [auth Bi], K [auth Ak], KC [auth Dk], MB [auth Cm], OA [auth Bo], Q [auth Aq], QC [auth Dq], SB [auth Cs], UA [auth Bu], W [auth Aw], WC [auth Dw], YB [auth Cy]	IcmG (DotF)	-	-	-
BA [auth Bb], BD [auth Eb], D [auth Ad], DC [auth Dd], FB [auth Cf], BA [auth Bb], BD [auth Eb], D [auth Ad], DC [auth Dd], FB [auth Cf], HA [auth Bh], J [auth Aj], JC [auth Dj], LB [auth Cl], NA [auth Bn], P [auth Ap], PC [auth Dp], RB [auth Cr], TA [auth Bt], V [auth Av], VC [auth Dv], XB [auth Cx], ZA [auth Bz]	unknown peptide H	-	-	-
AA [auth Ba], AD [auth Ea], C [auth Ac], CC [auth Dc], EB [auth Ce], AA [auth Ba], AD [auth Ea], C [auth Ac], CC [auth Dc], EB [auth Ce], GA [auth Bg], I [auth Ai], IC [auth Di], KB [auth Ck], MA [auth Bm], O [auth Ao], OC [auth Do], QB [auth Cq], SA [auth Bs], U [auth Au], UC [auth Du], WB [auth Cw], YA [auth By]	unknown peptide G	-	-	-
B [auth Ab], BC [auth Db], DB [auth Cd], FA [auth Bf], H [auth Ah], B [auth Ab], BC [auth Db], DB [auth Cd], FA [auth Bf], H [auth Ah], HC [auth Dh], JB [auth Cj], LA [auth Bl], N [auth An], NC [auth Dn], PB [auth Cp], RA [auth Br], T [auth At], TC [auth Dt], VB [auth Cv], XA [auth Bx], Z [auth Az], ZC [auth Dz]	unknown peptide F	-	-	-
A [auth Aa], AC [auth Da], CB [auth Cc], EA [auth Be], G [auth Ag], A [auth Aa], AC [auth Da], CB [auth Cc], EA [auth Be], G [auth Ag], GC [auth Dg], IB [auth Ci], KA [auth Bk], M [auth Am], MC [auth Dm], OB [auth Co], QA [auth Bq], S [auth As], SC [auth Ds], UB [auth Cu], WA [auth Bw], Y [auth Ay], YC [auth Dy]	unknown peptide E	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
BE [auth Fb], CE [auth Fc], DE [auth Fd], EE [auth Fe], FE [auth Ff]	IPR021528	Phagosome trafficking protein DotA	Family
BE [auth Fb], CE [auth Fc], DE [auth Fd], EE [auth Fe], FE [auth Ff]	IPR027628	Conjugal transfer/type IV secretion protein DotA/TraY	Family
ED [auth Ee], FD [auth Ef], GD [auth Eg], GE [auth Fg], HD [auth Eh], ED [auth Ee], FD [auth Ef], GD [auth Eg], GE [auth Fg], HD [auth Eh], HE [auth Fh], ID [auth Ei], IE [auth Fi], JD [auth Ej], JE [auth Fj], KD [auth Ek], KE [auth Fk], LD [auth El], MD [auth Em], ND [auth En], OD [auth Eo], PD [auth Ep], QD [auth Eq], RD [auth Er], SD [auth Es], TD [auth Et], UD [auth Eu], VD [auth Ev]	IPR053285	Thylakoid lumenal pentapeptide repeat protein	Family
ED [auth Ee], FD [auth Ef], GD [auth Eg], GE [auth Fg], HD [auth Eh], ED [auth Ee], FD [auth Ef], GD [auth Eg], GE [auth Fg], HD [auth Eh], HE [auth Fh], ID [auth Ei], IE [auth Fi], JD [auth Ej], JE [auth Fj], KD [auth Ek], KE [auth Fk], LD [auth El], MD [auth Em], ND [auth En], OD [auth Eo], PD [auth Ep], QD [auth Eq], RD [auth Er], SD [auth Es], TD [auth Et], UD [auth Eu], VD [auth Ev]	IPR042217	Type IV secretion system, VirB10/TrbI	Homologous Superfamily
ED [auth Ee], FD [auth Ef], GD [auth Eg], GE [auth Fg], HD [auth Eh], ED [auth Ee], FD [auth Ef], GD [auth Eg], GE [auth Fg], HD [auth Eh], HE [auth Fh], ID [auth Ei], IE [auth Fi], JD [auth Ej], JE [auth Fj], KD [auth Ek], KE [auth Fk], LD [auth El], MD [auth Em], ND [auth En], OD [auth Eo], PD [auth Ep], QD [auth Eq], RD [auth Er], SD [auth Es], TD [auth Et], UD [auth Eu], VD [auth Ev]	IPR057481	Decapeptide repeat	Repeat
ED [auth Ee], FD [auth Ef], GD [auth Eg], GE [auth Fg], HD [auth Eh], ED [auth Ee], FD [auth Ef], GD [auth Eg], GE [auth Fg], HD [auth Eh], HE [auth Fh], ID [auth Ei], IE [auth Fi], JD [auth Ej], JE [auth Fj], KD [auth Ek], KE [auth Fk], LD [auth El], MD [auth Em], ND [auth En], OD [auth Eo], PD [auth Ep], QD [auth Eq], RD [auth Er], SD [auth Es], TD [auth Et], UD [auth Eu], VD [auth Ev]	IPR049855	DotG/IcmE-like, C-terminal domain	Domain
ED [auth Ee], FD [auth Ef], GD [auth Eg], GE [auth Fg], HD [auth Eh], ED [auth Ee], FD [auth Ef], GD [auth Eg], GE [auth Fg], HD [auth Eh], HE [auth Fh], ID [auth Ei], IE [auth Fi], JD [auth Ej], JE [auth Fj], KD [auth Ek], KE [auth Fk], LD [auth El], MD [auth Em], ND [auth En], OD [auth Eo], PD [auth Ep], QD [auth Eq], RD [auth Er], SD [auth Es], TD [auth Et], UD [auth Eu], VD [auth Ev]	IPR005498	Type IV secretion system, VirB10/TraB/TrbI	Family
BB [auth Cb], DA [auth Bd], DD [auth Ed], F [auth Af], FC [auth Df], BB [auth Cb], DA [auth Bd], DD [auth Ed], F [auth Af], FC [auth Df], HB [auth Ch], JA [auth Bj], L [auth Al], LC [auth Dl], NB [auth Cn], PA [auth Bp], R [auth Ar], RC [auth Dr], TB [auth Ct], VA [auth Bv], X [auth Ax], XC [auth Dx], ZB [auth Cz]	IPR022073	Putative outer membrane core complex of type IVb secretion	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.