9N5X | pdb_00009n5x

The capsid structure of AAVpo.1

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Ribosomal_L4	e9n5xA01	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Ribosomal_L4	ECOD (v295)
AA [auth a]	Beta-Casp	e9n5xa1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
BA [auth b]	Beta-Casp	e9n5xb1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
BB [auth 2]	Beta-Casp	e9n5x21	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
C	Beta-Casp	e9n5xC1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
CB [auth 3]	Beta-Casp	e9n5x31	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
D	Beta-Casp	e9n5xD1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
DA [auth d]	Beta-Casp	e9n5xd1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
E	Beta-Casp	e9n5xE1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
FB [auth 6]	Beta-Casp	e9n5x61	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
G	Beta-Casp	e9n5xG1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
GB [auth 7]	Beta-Casp	e9n5x71	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
HA [auth h]	Beta-Casp	e9n5xh1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
IA [auth i]	Beta-Casp	e9n5xi1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
J	Beta-Casp	e9n5xJ1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
JA [auth j]	Beta-Casp	e9n5xj1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
KA [auth k]	Beta-Casp	e9n5xk1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
M	Beta-Casp	e9n5xM1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
N	Beta-Casp	e9n5xN1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
Q	Beta-Casp	e9n5xQ1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
QA [auth q]	Beta-Casp	e9n5xq1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
R	Beta-Casp	e9n5xR1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
S	Beta-Casp	e9n5xS1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
SA [auth s]	Beta-Casp	e9n5xs1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
TA [auth t]	Beta-Casp	e9n5xt1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
U	Beta-Casp	e9n5xU1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
XA [auth x]	Beta-Casp	e9n5xx1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
Y	Beta-Casp	e9n5xY1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
Z	Beta-Casp	e9n5xZ1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
ZA [auth z]	Beta-Casp	e9n5xz1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
YA [auth y]	Beta-Casp	e9n5xy1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
X	Beta-Casp	e9n5xX1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
WA [auth w]	Beta-Casp	e9n5xw1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
W	Beta-Casp	e9n5xW1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
VA [auth v]	Beta-Casp	e9n5xv1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
V	Beta-Casp	e9n5xV1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
UA [auth u]	Beta-Casp	e9n5xu1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
T	Beta-Casp	e9n5xT1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
RA [auth r]	Beta-Casp	e9n5xr1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
PA [auth p]	Beta-Casp	e9n5xp1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
P	Beta-Casp	e9n5xP1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
OA [auth o]	Beta-Casp	e9n5xo1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
O	Beta-Casp	e9n5xO1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
NA [auth n]	Beta-Casp	e9n5xn1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
MA [auth m]	Beta-Casp	e9n5xm1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
LA [auth l]	Beta-Casp	e9n5xl1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
L	Beta-Casp	e9n5xL1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
K	Beta-Casp	e9n5xK1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
I	Beta-Casp	e9n5xI1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
HB [auth 8]	Beta-Casp	e9n5x81	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
H	Beta-Casp	e9n5xH1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
GA [auth g]	Beta-Casp	e9n5xg1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
FA [auth f]	Beta-Casp	e9n5xf1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
F	Beta-Casp	e9n5xF1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
EB [auth 5]	Beta-Casp	e9n5x51	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
EA [auth e]	Beta-Casp	e9n5xe1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
DB [auth 4]	Beta-Casp	e9n5x41	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
CA [auth c]	Beta-Casp	e9n5xc1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
B	Beta-Casp	e9n5xB1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)
AB [auth 1]	Beta-Casp	e9n5x11	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: Beta-Casp	ECOD (v295)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	VP3	structural molecule activity	-	viral capsid icosahedral viral capsid virion component T=1 icosahedral viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	IPR016184	Capsid/spike protein, ssDNA virus	Homologous Superfamily
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	IPR001403	Coat protein VP1/VP2, Parvovirus	Domain
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	IPR036952	Parvovirus coat protein VP1/VP2	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.