9MOY | pdb_00009moy

Reconstituted yeast V-ATPase bound to Rtc5p

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L [auth O]	SCOP2B Superfamily	Vacuolar ATP synthase subunit C	8042806	3001744	SCOP2B (2022-06-29)
EA [auth P]	SCOP2B Superfamily	ARM repeat-like	8033221	3000116	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
BA [auth B], CA [auth D], DA [auth F]	PF05493	ATP synthase subunit H (ATP_synt_H)	ATP synthase subunit H	-	Family
BA [auth B], CA [auth D], DA [auth F]	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain (ATP-synt_ab)	ATP synthase alpha/beta family, nucleotide-binding domain	This entry includes the ATP synthase alpha and beta subunits, the ATP synthase associated with flagella and the termination factor Rho.	Domain
BA [auth B], CA [auth D], DA [auth F]	PF22919	C-terminal domain of V and A type ATP synthase (ATP-synt_VA_C)	C-terminal domain of V and A type ATP synthase	This entry represents a small alpha helical domain found at the C-terminus of a variety of ATP synthases.	Domain
BA [auth B], CA [auth D], DA [auth F]	PF02874	ATP synthase alpha/beta family, beta-barrel domain (ATP-synt_ab_N)	ATP synthase alpha/beta family, beta-barrel domain	This family includes the ATP synthase alpha and beta subunits the ATP synthase associated with flagella.	Domain
BA [auth B], CA [auth D], DA [auth F]	PF00137	ATP synthase subunit C (ATP-synt_C)	ATP synthase subunit C	This domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4].	Domain
FA [auth Q]	PF01496	V-type ATPase 116kDa subunit family (V_ATPase_I)	V-type ATPase 116kDa subunit family	-	Family
O [auth T]	PF00137	ATP synthase subunit C (ATP-synt_C)	ATP synthase subunit C	This domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4].	Domain
N [auth S]	PF01992	ATP synthase (C/AC39) subunit (vATP-synt_AC39)	ATP synthase (C/AC39) subunit	-	Family
L [auth O]	PF03223	V-ATPase subunit C (V-ATPase_C)	V-ATPase subunit C	-	Family
K [auth N]	PF01990	ATP synthase (F/14-kDa) subunit (ATP-synt_F)	ATP synthase (F/14-kDa) subunit	-	Family
J [auth M]	PF01813	ATP synthase subunit D (ATP-synt_D)	ATP synthase subunit D	-	Family
E [auth H], G [auth J], I [auth L]	PF03179	Vacuolar (H+)-ATPase G subunit (V-ATPase_G)	Vacuolar (H+)-ATPase G subunit	-	Coiled-coil
D [auth G], F [auth I], H [auth K]	PF01991	ATP synthase (E/31 kDa) subunit (vATP-synt_E)	ATP synthase (E/31 kDa) subunit	-	Family
EA [auth P]	PF11698	V-ATPase subunit H (V-ATPase_H_C)	V-ATPase subunit H	-	Repeat
EA [auth P]	PF03224	V-ATPase subunit H (V-ATPase_H_N)	V-ATPase subunit H	-	Repeat
Q [auth V], R [auth W], S [auth X], T [auth Y], U [auth Z], Q [auth V], R [auth W], S [auth X], T [auth Y], U [auth Z], V [auth a], W [auth b], X [auth c]	PF00137	ATP synthase subunit C (ATP-synt_C)	ATP synthase subunit C	This domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4].	Domain
P [auth U]	PF00137	ATP synthase subunit C (ATP-synt_C)	ATP synthase subunit C	This domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4].	Domain
A, B [auth C], C [auth E]	PF20520	V0 complex accessory subunit Ac45/VOA1 transmembrane domain (Ac45-VOA1_TM)	V0 complex accessory subunit Ac45/VOA1 transmembrane domain	This entry represents the transmembrane domain from ER/Golgi membrane proteins including V0 complex accessory subunit Ac45 (ATP6AP1, also known as V-type proton ATPase subunit S1) from animals and the yeast homologue V0 assembly protein 1 (VOA1) whic ...	This entry represents the transmembrane domain from ER/Golgi membrane proteins including V0 complex accessory subunit Ac45 (ATP6AP1, also known as V-type proton ATPase subunit S1) from animals and the yeast homologue V0 assembly protein 1 (VOA1) which are essential for V0 ATPase assembly, stability and function [1,2]. In humans, mutations of ATP6AP1 cause immunodeficiency with hypogammaglobulinemia, hepatopathy and neurocognitive abnormalities [3]. This entry also includes ER membrane BIG1 proteins from yeast, involved in cell wall biogenesis.	Domain
A, B [auth C], C [auth E]	PF00137	ATP synthase subunit C (ATP-synt_C)	ATP synthase subunit C	This domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
AA [auth f]	IPR056552	Ribonucl_Kappa	Unknown
AA [auth f]	IPR026770	Ribonuclease kappa	Family
BA [auth B], CA [auth D], DA [auth F]	IPR000194	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	Domain
BA [auth B], CA [auth D], DA [auth F]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
BA [auth B], CA [auth D], DA [auth F]	IPR004100	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain	Domain
BA [auth B], CA [auth D], DA [auth F]	IPR005723	ATPase, V1 complex, subunit B	Family
BA [auth B], CA [auth D], DA [auth F]	IPR022879	V-type ATP synthase regulatory subunit B/beta	Family
BA [auth B], CA [auth D], DA [auth F]	IPR020003	ATPase, alpha/beta subunit, nucleotide-binding domain, active site	Active Site
BA [auth B], CA [auth D], DA [auth F]	IPR055190	ATP synthase A/B type, C-terminal domain	Domain
FA [auth Q]	IPR026028	ATPase, V0 complex, subunit 116kDa, eukaryotic	Family
FA [auth Q]	IPR002490	V-type ATPase, V0 complex, 116kDa subunit family	Family
O [auth T]	IPR035921	F/V-ATP synthase subunit C superfamily	Homologous Superfamily
O [auth T]	IPR002379	V-ATPase proteolipid subunit C-like domain	Domain
O [auth T]	IPR000245	V-ATPase proteolipid subunit	Family
N [auth S]	IPR044911	V-type ATP synthase C/D subunit, domain 3 superfamily	Homologous Superfamily
N [auth S]	IPR002843	ATPase, V0 complex, C/D subunit	Family
N [auth S]	IPR036079	V-type ATP synthase subunit C/D subunit superfamily	Homologous Superfamily
N [auth S]	IPR035067	V-type ATPase subunit C/D	Homologous Superfamily
N [auth S]	IPR016727	ATPase, V0 complex, subunit D	Family
M [auth R]	IPR006571	TLDc domain	Domain
L [auth O]	IPR036132	Vacuolar ATP synthase subunit C superfamily	Homologous Superfamily
L [auth O]	IPR004907	ATPase, V1 complex, subunit C	Family
K [auth N]	IPR036906	ATPase, V1 complex, subunit F superfamily	Homologous Superfamily
K [auth N]	IPR005772	ATPase, V1 complex, subunit F, eukaryotic	Family
K [auth N]	IPR008218	ATPase, V1 complex, subunit F	Family
J [auth M]	IPR002699	ATPase, V1 complex, subunit D	Family
E [auth H], G [auth J], I [auth L]	IPR005124	Vacuolar (H+)-ATPase G subunit	Family
D [auth G], F [auth I], H [auth K]	IPR038495	V-type ATPase subunit E, C-terminal domain superfamily	Homologous Superfamily
D [auth G], F [auth I], H [auth K]	IPR002842	V-type ATPase subunit E	Family
EA [auth P]	IPR004908	ATPase, V1 complex, subunit H	Family
EA [auth P]	IPR016024	Armadillo-type fold	Homologous Superfamily
EA [auth P]	IPR011989	Armadillo-like helical	Homologous Superfamily
EA [auth P]	IPR038497	ATPase, V1 complex, subunit H, C-terminal domain superfamily	Homologous Superfamily
EA [auth P]	IPR011987	ATPase, V1 complex, subunit H, C-terminal	Domain
Z [auth e]	IPR046756	V-type proton ATPase subunit S1/VOA1, transmembrane domain	Domain
Y [auth d]	IPR008389	ATPase, V0 complex, subunit e1/e2	Family
Q [auth V], R [auth W], S [auth X], T [auth Y], U [auth Z], Q [auth V], R [auth W], S [auth X], T [auth Y], U [auth Z], V [auth a], W [auth b], X [auth c]	IPR035921	F/V-ATP synthase subunit C superfamily	Homologous Superfamily
Q [auth V], R [auth W], S [auth X], T [auth Y], U [auth Z], Q [auth V], R [auth W], S [auth X], T [auth Y], U [auth Z], V [auth a], W [auth b], X [auth c]	IPR002379	V-ATPase proteolipid subunit C-like domain	Domain
Q [auth V], R [auth W], S [auth X], T [auth Y], U [auth Z], Q [auth V], R [auth W], S [auth X], T [auth Y], U [auth Z], V [auth a], W [auth b], X [auth c]	IPR011555	V-ATPase proteolipid subunit C, eukaryotic	Family
Q [auth V], R [auth W], S [auth X], T [auth Y], U [auth Z], Q [auth V], R [auth W], S [auth X], T [auth Y], U [auth Z], V [auth a], W [auth b], X [auth c]	IPR000245	V-ATPase proteolipid subunit	Family
P [auth U]	IPR035921	F/V-ATP synthase subunit C superfamily	Homologous Superfamily
P [auth U]	IPR002379	V-ATPase proteolipid subunit C-like domain	Domain
P [auth U]	IPR011555	V-ATPase proteolipid subunit C, eukaryotic	Family
P [auth U]	IPR000245	V-ATPase proteolipid subunit	Family
A, B [auth C], C [auth E]	IPR004100	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain	Domain
A, B [auth C], C [auth E]	IPR022878	V-type ATP synthase catalytic alpha chain	Family
A, B [auth C], C [auth E]	IPR024034	ATPase, F1/V1 complex, beta/alpha subunit, C-terminal	Homologous Superfamily
A, B [auth C], C [auth E]	IPR036121	ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily	Homologous Superfamily
A, B [auth C], C [auth E]	IPR031686	ATPsynthase alpha/beta subunit, barrel-sandwich domain	Domain
A, B [auth C], C [auth E]	IPR023366	ATP synthase subunit alpha, N-terminal domain-like superfamily	Homologous Superfamily
A, B [auth C], C [auth E]	IPR020003	ATPase, alpha/beta subunit, nucleotide-binding domain, active site	Active Site
A, B [auth C], C [auth E]	IPR000194	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	Domain
A, B [auth C], C [auth E]	IPR055190	ATP synthase A/B type, C-terminal domain	Domain
A, B [auth C], C [auth E]	IPR005725	ATPase, V1 complex, subunit A	Family
A, B [auth C], C [auth E]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.