9M5T | pdb_00009m5t

Structure of the flagellar filament in short-length at 3.02 angstroms resolution


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth AA]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
A [auth AA]SCOP2B SuperfamilyFliC central-region like 8034125 3001385 SCOP2B (2022-06-29)
A [auth AA]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
AA [auth CE]SCOP2B SuperfamilyFliC central-region like 8034125 3001385 SCOP2B (2022-06-29)
AA [auth CE]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
AA [auth CE]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
B [auth AB]SCOP2B SuperfamilyFliC central-region like 8034125 3001385 SCOP2B (2022-06-29)
B [auth AB]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
B [auth AB]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
BA [auth CF]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
BA [auth CF]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
BA [auth CF]SCOP2B SuperfamilyFliC central-region like 8034125 3001385 SCOP2B (2022-06-29)
C [auth AC]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
C [auth AC]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
C [auth AC]SCOP2B SuperfamilyFliC central-region like 8034125 3001385 SCOP2B (2022-06-29)
CA [auth CG]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
CA [auth CG]SCOP2B SuperfamilyFliC central-region like 8034125 3001385 SCOP2B (2022-06-29)
CA [auth CG]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
D [auth AD]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
D [auth AD]SCOP2B SuperfamilyFliC central-region like 8034125 3001385 SCOP2B (2022-06-29)
D [auth AD]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
DA [auth CH]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
DA [auth CH]SCOP2B SuperfamilyFliC central-region like 8034125 3001385 SCOP2B (2022-06-29)
DA [auth CH]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
E [auth AE]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
E [auth AE]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
E [auth AE]SCOP2B SuperfamilyFliC central-region like 8034125 3001385 SCOP2B (2022-06-29)
EA [auth CI]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
EA [auth CI]SCOP2B SuperfamilyFliC central-region like 8034125 3001385 SCOP2B (2022-06-29)
EA [auth CI]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
F [auth AF]SCOP2B SuperfamilyFliC central-region like 8034125 3001385 SCOP2B (2022-06-29)
F [auth AF]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
F [auth AF]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
FA [auth CJ]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
FA [auth CJ]SCOP2B SuperfamilyFliC central-region like 8034125 3001385 SCOP2B (2022-06-29)
FA [auth CJ]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
G [auth AG]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
G [auth AG]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
G [auth AG]SCOP2B SuperfamilyFliC central-region like 8034125 3001385 SCOP2B (2022-06-29)
GA [auth CK]SCOP2B SuperfamilyFliC central-region like 8034125 3001385 SCOP2B (2022-06-29)
GA [auth CK]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
GA [auth CK]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
H [auth AH]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
H [auth AH]SCOP2B SuperfamilyFliC central-region like 8034125 3001385 SCOP2B (2022-06-29)
H [auth AH]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
HA [auth DA]SCOP2B SuperfamilyFliC central-region like 8034125 3001385 SCOP2B (2022-06-29)
HA [auth DA]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
HA [auth DA]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
I [auth AI]SCOP2B SuperfamilyFliC central-region like 8034125 3001385 SCOP2B (2022-06-29)
I [auth AI]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
I [auth AI]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
IA [auth DB]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
IA [auth DB]SCOP2B SuperfamilyFliC central-region like 8034125 3001385 SCOP2B (2022-06-29)
IA [auth DB]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
J [auth AJ]SCOP2B SuperfamilyFliC central-region like 8034125 3001385 SCOP2B (2022-06-29)
J [auth AJ]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
J [auth AJ]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
JA [auth DC]SCOP2B SuperfamilyFliC central-region like 8034125 3001385 SCOP2B (2022-06-29)
JA [auth DC]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
JA [auth DC]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
K [auth AK]SCOP2B SuperfamilyFliC central-region like 8034125 3001385 SCOP2B (2022-06-29)
K [auth AK]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
K [auth AK]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
KA [auth DD]SCOP2B SuperfamilyFliC central-region like 8034125 3001385 SCOP2B (2022-06-29)
KA [auth DD]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
KA [auth DD]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
L [auth BA]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
L [auth BA]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
L [auth BA]SCOP2B SuperfamilyFliC central-region like 8034125 3001385 SCOP2B (2022-06-29)
LA [auth DE]SCOP2B SuperfamilyFliC central-region like 8034125 3001385 SCOP2B (2022-06-29)
LA [auth DE]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
LA [auth DE]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
M [auth BB]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
M [auth BB]SCOP2B SuperfamilyFliC central-region like 8034125 3001385 SCOP2B (2022-06-29)
M [auth BB]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
MA [auth DF]SCOP2B SuperfamilyFliC central-region like 8034125 3001385 SCOP2B (2022-06-29)
MA [auth DF]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
MA [auth DF]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
N [auth BC]SCOP2B SuperfamilyFliC central-region like 8034125 3001385 SCOP2B (2022-06-29)
N [auth BC]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
N [auth BC]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
NA [auth DG]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
NA [auth DG]SCOP2B SuperfamilyFliC central-region like 8034125 3001385 SCOP2B (2022-06-29)
NA [auth DG]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
O [auth BD]SCOP2B SuperfamilyFliC central-region like 8034125 3001385 SCOP2B (2022-06-29)
O [auth BD]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
O [auth BD]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
OA [auth DH]SCOP2B SuperfamilyFliC central-region like 8034125 3001385 SCOP2B (2022-06-29)
OA [auth DH]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
OA [auth DH]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
P [auth BE]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
P [auth BE]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
P [auth BE]SCOP2B SuperfamilyFliC central-region like 8034125 3001385 SCOP2B (2022-06-29)
PA [auth DI]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
PA [auth DI]SCOP2B SuperfamilyFliC central-region like 8034125 3001385 SCOP2B (2022-06-29)
PA [auth DI]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
Q [auth BF]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
Q [auth BF]SCOP2B SuperfamilyFliC central-region like 8034125 3001385 SCOP2B (2022-06-29)
Q [auth BF]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
QA [auth DJ]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
QA [auth DJ]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
QA [auth DJ]SCOP2B SuperfamilyFliC central-region like 8034125 3001385 SCOP2B (2022-06-29)
R [auth BG]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
R [auth BG]SCOP2B SuperfamilyFliC central-region like 8034125 3001385 SCOP2B (2022-06-29)
R [auth BG]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
RA [auth DK]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
RA [auth DK]SCOP2B SuperfamilyFliC central-region like 8034125 3001385 SCOP2B (2022-06-29)
RA [auth DK]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
S [auth BH]SCOP2B SuperfamilyFliC central-region like 8034125 3001385 SCOP2B (2022-06-29)
S [auth BH]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
S [auth BH]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
T [auth BI]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
T [auth BI]SCOP2B SuperfamilyFliC central-region like 8034125 3001385 SCOP2B (2022-06-29)
T [auth BI]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
U [auth BJ]SCOP2B SuperfamilyFliC central-region like 8034125 3001385 SCOP2B (2022-06-29)
U [auth BJ]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
U [auth BJ]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
V [auth BK]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
V [auth BK]SCOP2B SuperfamilyFliC central-region like 8034125 3001385 SCOP2B (2022-06-29)
V [auth BK]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
W [auth CA]SCOP2B SuperfamilyFliC central-region like 8034125 3001385 SCOP2B (2022-06-29)
W [auth CA]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
W [auth CA]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
X [auth CB]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
X [auth CB]SCOP2B SuperfamilyFliC central-region like 8034125 3001385 SCOP2B (2022-06-29)
X [auth CB]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
Y [auth CC]SCOP2B SuperfamilyFliC central-region like 8034125 3001385 SCOP2B (2022-06-29)
Y [auth CC]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
Y [auth CC]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
Z [auth CD]SCOP2B SuperfamilyFliC central-region like 8034125 3001385 SCOP2B (2022-06-29)
Z [auth CD]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)
Z [auth CD]SCOP2B SuperfamilyFlgL-like 8054354 3002287 SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF00700Bacterial flagellin C-terminal helical region (Flagellin_C)Bacterial flagellin C-terminal helical regionFlagellins polymerise to form bacterial flagella. There is some similarity between this entry and Pfam:PF00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate [2] and this is shown to be correct as structur ...Flagellins polymerise to form bacterial flagella. There is some similarity between this entry and Pfam:PF00669, particularly the motif NRFXSXIXXL. It has been suggested that these two regions associate [2] and this is shown to be correct as structurally this domain forms an extended helix that interacts with the N-terminal region (Pfam:PF00669) to form the D0 and D1 structural domains [3]. These domains are responsible for the activation of TLR5, with the C-terminal D0 region playing a key role [4-6].
Domain
PF08884Flagellin D3 domain (Flagellin_D3)Flagellin D3 domainThis domain is found in the central portion bacterial flagellin FliC. The domain contains a structural motif called a beta-folium fold [1]. Although no specific function is assigned to this domain its deletion leads to a reduction in filament stabi ...This domain is found in the central portion bacterial flagellin FliC. The domain contains a structural motif called a beta-folium fold [1]. Although no specific function is assigned to this domain its deletion leads to a reduction in filament stability [2].
Domain
PF00669Bacterial flagellin N-terminal helical region (Flagellin_N)Bacterial flagellin N-terminal helical region- Family
PF21504Flagellin, barrel domain (FLIC_barrel)Flagellin, barrel domainThis entry represents a barrel domain of flagellins FliC and FljB, which have a boomerang-shape with one arm composed of domain D1 and the other formed by D2 and D3 [1-3]. This entry corresponds to to subdomain D2b described in [4]. Domain

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR049365Flagellin, barrel domainDomain
IPR046358Flagellin, C-terminal domainDomain
IPR014981Flagellin D3Domain
IPR001029Flagellin, N-terminal domainDomain
IPR042187Flagellin, C-terminal domain, subdomain 2Homologous Superfamily
IPR001492FlagellinFamily