9JZ0 | pdb_00009jz0

portal-tail complex of DNA-ejected T7

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
LA [auth X]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104061	3001980	SCOP2B (2022-06-29)
KA [auth W]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104061	3001980	SCOP2B (2022-06-29)
JA [auth V]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104061	3001980	SCOP2B (2022-06-29)
IA [auth U]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104061	3001980	SCOP2B (2022-06-29)
HA [auth T]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104061	3001980	SCOP2B (2022-06-29)
GA [auth S]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104061	3001980	SCOP2B (2022-06-29)
FA [auth R]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104061	3001980	SCOP2B (2022-06-29)
EA [auth Q]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104061	3001980	SCOP2B (2022-06-29)
DA [auth P]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104061	3001980	SCOP2B (2022-06-29)
CA [auth O]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104061	3001980	SCOP2B (2022-06-29)
BA [auth N]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104061	3001980	SCOP2B (2022-06-29)
AA [auth M]	SCOP2B Superfamily	YqbG/phage connector protein-like	8104061	3001980	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Z [auth L]	Beta-Casp	e9jz0L1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
Y [auth K]	Beta-Casp	e9jz0K1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
X [auth J]	Beta-Casp	e9jz0J1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
W [auth I]	Beta-Casp	e9jz0I1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
V [auth H]	Beta-Casp	e9jz0H1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
U [auth G]	Beta-Casp	e9jz0G1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
T [auth F]	Beta-Casp	e9jz0F1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
S [auth E]	Beta-Casp	e9jz0E1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
R [auth D]	Beta-Casp	e9jz0D1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
Q [auth C]	Beta-Casp	e9jz0C1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
P [auth B]	Beta-Casp	e9jz0B1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
K [auth A]	Beta-Casp	e9jz0A1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
LA [auth X]	Beta-Casp	e9jz0X1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
KA [auth W]	Beta-Casp	e9jz0W1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
JA [auth V]	Beta-Casp	e9jz0V1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
IA [auth U]	Beta-Casp	e9jz0U1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
HA [auth T]	Beta-Casp	e9jz0T1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
GA [auth S]	Beta-Casp	e9jz0S1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
FA [auth R]	Beta-Casp	e9jz0R1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
EA [auth Q]	Beta-Casp	e9jz0Q1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
DA [auth P]	Beta-Casp	e9jz0P1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
CA [auth O]	Beta-Casp	e9jz0O1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
BA [auth N]	Beta-Casp	e9jz0N1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
AA [auth M]	Beta-Casp	e9jz0M1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
K [auth A], P [auth B], Q [auth C], R [auth D], S [auth E], K [auth A], P [auth B], Q [auth C], R [auth D], S [auth E], T [auth F], U [auth G], V [auth H], W [auth I], X [auth J], Y [auth K], Z [auth L]	PF12236	Bacteriophage head to tail connecting protein (Head-tail_con)	Bacteriophage head to tail connecting protein	-	Family
AA [auth M], BA [auth N], CA [auth O], DA [auth P], EA [auth Q], AA [auth M], BA [auth N], CA [auth O], DA [auth P], EA [auth Q], FA [auth R], GA [auth S], HA [auth T], IA [auth U], JA [auth V], KA [auth W], LA [auth X]	PF17212	Tail tubular protein (Tube)	Tail tubular protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth 0], B [auth 1], MA [auth Y], MB [auth y], NA [auth Z], A [auth 0], B [auth 1], MA [auth Y], MB [auth y], NA [auth Z], NB [auth z]	Internal virion protein gp14	-	symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont entry into host cell viral process symbiont entry into host symbiont genome ejection through host cell envelope, short tail mechanism viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction	virion component host cell plasma membrane host cellular component cellular anatomical structure host cell part host cell membrane other organism part
C [auth 2], D [auth 3], E [auth 4], F [auth 5], G [auth 6], C [auth 2], D [auth 3], E [auth 4], F [auth 5], G [auth 6], H [auth 7], I [auth 8], J [auth 9], L [auth AA], M [auth AB], N [auth AC], O [auth AD]	Protein 6.7	-	-	viral capsid icosahedral viral capsid T=7 icosahedral viral capsid virion component
K [auth A], P [auth B], Q [auth C], R [auth D], S [auth E], K [auth A], P [auth B], Q [auth C], R [auth D], S [auth E], T [auth F], U [auth G], V [auth H], W [auth I], X [auth J], Y [auth K], Z [auth L]	Portal protein	-	virion assembly viral process viral life cycle viral genome packaging viral DNA genome packaging symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont entry into host cell symbiont entry into host symbiont genome ejection through host cell envelope, short tail mechanism biological process involved in interaction with host biological process involved in symbiotic interaction	protein-containing complex viral capsid virion component viral portal complex
AA [auth M], BA [auth N], CA [auth O], DA [auth P], EA [auth Q], AA [auth M], BA [auth N], CA [auth O], DA [auth P], EA [auth Q], FA [auth R], GA [auth S], HA [auth T], IA [auth U], JA [auth V], KA [auth W], LA [auth X]	Tail tubular protein gp11	-	symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont entry into host cell viral process symbiont entry into host symbiont genome ejection through host cell envelope, short tail mechanism viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction	virus tail, tube virus tail virion component
AB [auth m], BB [auth n], CB [auth o], DB [auth p], EB [auth q], AB [auth m], BB [auth n], CB [auth o], DB [auth p], EB [auth q], FB [auth r], OA [auth a], PA [auth b], QA [auth c], RA [auth d], SA [auth e], TA [auth f], UA [auth g], VA [auth h], WA [auth i], XA [auth j], YA [auth k], ZA [auth l]	Tail fiber protein	identical protein binding protein binding binding	virion attachment to host cell biological process involved in interspecies interaction between organisms receptor-mediated virion attachment to host cell adhesion of symbiont to host cell viral process viral life cycle adhesion of symbiont to host adhesion receptor-mediated virion attachment to host cell biological process involved in interaction with host biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host	virus tail, fiber virus tail virion component
GB [auth s], HB [auth t], IB [auth u], JB [auth v], KB [auth w], GB [auth s], HB [auth t], IB [auth u], JB [auth v], KB [auth w], LB [auth x]	Tail tubular protein gp12	-	symbiont genome ejection through host cell envelope biological process involved in interspecies interaction between organisms symbiont entry into host cell viral process symbiont entry into host symbiont genome ejection through host cell envelope, short tail mechanism viral life cycle biological process involved in interaction with host biological process involved in symbiotic interaction	virus tail, tube virus tail virion component

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth 0], B [auth 1], MA [auth Y], MB [auth y], NA [auth Z], A [auth 0], B [auth 1], MA [auth Y], MB [auth y], NA [auth Z], NB [auth z]	IPR038996	Internal virion protein Gp14	Family
C [auth 2], D [auth 3], E [auth 4], F [auth 5], G [auth 6], C [auth 2], D [auth 3], E [auth 4], F [auth 5], G [auth 6], H [auth 7], I [auth 8], J [auth 9], L [auth AA], M [auth AB], N [auth AC], O [auth AD]	IPR020134	Bacteriophage T7-like, protein 6.7	Family
K [auth A], P [auth B], Q [auth C], R [auth D], S [auth E], K [auth A], P [auth B], Q [auth C], R [auth D], S [auth E], T [auth F], U [auth G], V [auth H], W [auth I], X [auth J], Y [auth K], Z [auth L]	IPR038995	Portal protein, Caudovirales	Family
K [auth A], P [auth B], Q [auth C], R [auth D], S [auth E], K [auth A], P [auth B], Q [auth C], R [auth D], S [auth E], T [auth F], U [auth G], V [auth H], W [auth I], X [auth J], Y [auth K], Z [auth L]	IPR020991	Head-to-tail connector protein, podovirus-type	Family
AA [auth M], BA [auth N], CA [auth O], DA [auth P], EA [auth Q], AA [auth M], BA [auth N], CA [auth O], DA [auth P], EA [auth Q], FA [auth R], GA [auth S], HA [auth T], IA [auth U], JA [auth V], KA [auth W], LA [auth X]	IPR033767	Tail tubular protein Gp11	Family
AB [auth m], BB [auth n], CB [auth o], DB [auth p], EB [auth q], AB [auth m], BB [auth n], CB [auth o], DB [auth p], EB [auth q], FB [auth r], OA [auth a], PA [auth b], QA [auth c], RA [auth d], SA [auth e], TA [auth f], UA [auth g], VA [auth h], WA [auth i], XA [auth j], YA [auth k], ZA [auth l]	IPR022246	Bacteriophage T7, Gp17, C-terminal	Domain
AB [auth m], BB [auth n], CB [auth o], DB [auth p], EB [auth q], AB [auth m], BB [auth n], CB [auth o], DB [auth p], EB [auth q], FB [auth r], OA [auth a], PA [auth b], QA [auth c], RA [auth d], SA [auth e], TA [auth f], UA [auth g], VA [auth h], WA [auth i], XA [auth j], YA [auth k], ZA [auth l]	IPR005604	Bacteriophage T7 tail fibre protein-like, N-terminal domain	Domain
AB [auth m], BB [auth n], CB [auth o], DB [auth p], EB [auth q], AB [auth m], BB [auth n], CB [auth o], DB [auth p], EB [auth q], FB [auth r], OA [auth a], PA [auth b], QA [auth c], RA [auth d], SA [auth e], TA [auth f], UA [auth g], VA [auth h], WA [auth i], XA [auth j], YA [auth k], ZA [auth l]	IPR048388	Tail fibre protein gp37, trimerization region	Domain
GB [auth s], HB [auth t], IB [auth u], JB [auth v], KB [auth w], GB [auth s], HB [auth t], IB [auth u], JB [auth v], KB [auth w], LB [auth x]	IPR058003	Tail tubular protein gp12	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.