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 9J9H | pdb_00009j9h

High-resolution cryo-EM structure of the Plasmodium falciparum 80S ribosome bound to RACK1 and E-tRNA


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
C [auth q]SCOP2B SuperfamilyGS N-terminal domain-like 8053165 3000408 SCOP2B (2022-06-29)
F [auth 1]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8053055 3000334 SCOP2B (2022-06-29)
G [auth r]SCOP2B SuperfamilyRibosomal protein S7 8066011 3000799 SCOP2B (2022-06-29)
N [auth t]SCOP2B SuperfamilyRibosomal protein S8 8081977 3000709 SCOP2B (2022-06-29)
O [auth E]SCOP2B SuperfamilyTranslational proteins 8078355 3000811 SCOP2B (2022-06-29)
P [auth 4]SCOP2B SuperfamilyRibosomal protein L29e 8053042 3002157 SCOP2B (2022-06-29)
S [auth 5]SCOP2B SuperfamilyRibosomal protein L30p/L7e 8052932 3001378 SCOP2B (2022-06-29)
S [auth 5]SCOP2B SuperfamilyRibosomal L30p/L7e protein, N-terminal domain-lke 8052931 3002152 SCOP2B (2022-06-29)
T [auth v]SCOP2B SuperfamilyRibosomal protein S5 domain 2-like 8082679 3000100 SCOP2B (2022-06-29)
U [auth G]SCOP2B SuperfamilyRL5-like 8073888 3001709 SCOP2B (2022-06-29)
V [auth 6]SCOP2B SuperfamilyL30e-like 8077495 3001739 SCOP2B (2022-06-29)
W [auth w]SCOP2B SuperfamilyRibosomal protein S10 8100154 3001336 SCOP2B (2022-06-29)
AA [auth I]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8053098 3000334 SCOP2B (2022-06-29)
AA [auth I]SCOP2B SuperfamilyRibosomal protein L6e, N-terminal domain 8053097 3002160 SCOP2B (2022-06-29)
EA [auth 9]SCOP2B SuperfamilyTranslational proteins 8087449 3000811 SCOP2B (2022-06-29)
HA [auth a]SCOP2B SuperfamilyRibosomal protein L34e-like 8053541 3002203 SCOP2B (2022-06-29)
IA [auth AA]SCOP2B SuperfamilyL30e-like 8063972 3001739 SCOP2B (2022-06-29)
JA [auth L]SCOP2B SuperfamilyRibosomal protein L13e-like 8053153 3002162 SCOP2B (2022-06-29)
KA [auth b]SCOP2B SuperfamilyRibosomal protein L36e 8053116 3002161 SCOP2B (2022-06-29)
LA [auth AB]SCOP2B SuperfamilyS13-like H2TH domain 8100146 3000053 SCOP2B (2022-06-29)
OA [auth AC]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8052571 3000068 SCOP2B (2022-06-29)
QA [auth d]SCOP2B SuperfamilyRibosomal L38e protein-like 8053570 3002206 SCOP2B (2022-06-29)
SA [auth O]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8077125 3001045 SCOP2B (2022-06-29)
TA [auth e]SCOP2B SuperfamilyRibosomal protein L39e 8097352 3001756 SCOP2B (2022-06-29)
UA [auth AE]SCOP2B SuperfamilyRibosomal S17 N-terminal domain-like 8052724 3002138 SCOP2B (2022-06-29)
UA [auth AE]SCOP2B SuperfamilyNucleic acid-binding proteins 8052726 3000135 SCOP2B (2022-06-29)
VA [auth P]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8082473 3000210 SCOP2B (2022-06-29)
WA [auth f]SCOP2B SuperfamilyZn-binding ribosomal proteins 8101707 3001320 SCOP2B (2022-06-29)
YA [auth Q]SCOP2B SuperfamilyRibosomal protein L16p/L10e 8100158 3000884 SCOP2B (2022-06-29)
BB [auth R]SCOP2B SuperfamilyTranslational machinery components 8052890 3000571 SCOP2B (2022-06-29)
CB [auth h]SCOP2B SuperfamilyZn-binding ribosomal proteins 8098254 3001320 SCOP2B (2022-06-29)
EB [auth S]SCOP2B SuperfamilyRibosomal proteins L15p and L18e 8095974 3001045 SCOP2B (2022-06-29)
GB [auth AI]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8053137 3000068 SCOP2B (2022-06-29)
LB [auth k]SCOP2B SuperfamilyRibosomal S3Ae-like 8053207 3002166 SCOP2B (2022-06-29)
OB [auth l]SCOP2B SuperfamilySIS domain/Ribosomal protein S2-like 8063816 3001397 SCOP2B (2022-06-29)
PB [auth AL]SCOP2B SuperfamilyGlucocorticoid receptor-like (DNA-binding domain) 8053146 3000068 SCOP2B (2022-06-29)
QB [auth W]SCOP2B SuperfamilyRibosomal protein L22 8076716 3001078 SCOP2B (2022-06-29)
TB [auth X]SCOP2B Superfamily60S Ribosomal protein L22e 8053062 3002158 SCOP2B (2022-06-29)
VB [auth AN]SCOP2B SuperfamilyNucleic acid-binding proteins 8063420 3000135 SCOP2B (2022-06-29)
WB [auth Y]SCOP2B SuperfamilyRibosomal proteins S24e, L23 and L15e 8095963 3000210 SCOP2B (2022-06-29)
XB [auth o]SCOP2B SuperfamilyAlpha-L RNA-binding motif 8052748 3001473 SCOP2B (2022-06-29)
XB [auth o]SCOP2B SuperfamilyNucleic acid-binding proteins 8052749 3000135 SCOP2B (2022-06-29)
XB [auth o]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8052750 3000334 SCOP2B (2022-06-29)
ZB [auth Z]SCOP2B SuperfamilyTranslation proteins SH3-like KOW motif containing domain 8076764 3000334 SCOP2B (2022-06-29)
YB [auth AO]SCOP2B SuperfamilyRibosomal protein S30e-like 8053452 3002190 SCOP2B (2022-06-29)
RA [auth AD]SCOP2B SuperfamilyS15/NS1 RNA-binding domain 8052965 3001284 SCOP2B (2022-06-29)
RA [auth AD]SCOP2B SuperfamilyHomeodomain-like 8052964 3000001 SCOP2B (2022-06-29)
MA [auth M]SCOP2B Superfamily50S Ribosomal protein L14-like 8072060 3000433 SCOP2B (2022-06-29)
Z [auth x]SCOP2B SuperfamilyWinged helix DNA-binding domain 8055711 3000034 SCOP2B (2022-06-29)
R [auth F]SCOP2B SuperfamilyRibosomal protein L4 8052823 3001146 SCOP2B (2022-06-29)
R [auth F]SCOP2B Superfamily60S ribosomal protein L4 C-terminal domain-like 8052822 3002143 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
B [auth 0]Beta-Caspe9j9h01 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
C [auth q]Beta-Caspe9j9hq1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
F [auth 1]Beta-Caspe9j9h11 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
G [auth r]Beta-Caspe9j9hr1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
H [auth AR]Beta-Caspe9j9hAR1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
J [auth 2]Beta-Caspe9j9h21 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
K [auth s]Beta-Caspe9j9hs1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
L [auth D]Beta-Caspe9j9hD1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
M [auth 3]Beta-Caspe9j9h31 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
N [auth t]Beta-Caspe9j9ht1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
O [auth E]Beta-Caspe9j9hE1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
P [auth 4]Beta-Caspe9j9h41 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
S [auth 5]Beta-Caspe9j9h51 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
T [auth v]Beta-Caspe9j9hv1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
U [auth G]Beta-Caspe9j9hG1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
V [auth 6]Beta-Caspe9j9h61 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
W [auth w]Beta-Caspe9j9hw1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
X [auth H]Beta-Caspe9j9hH1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
AA [auth I]Beta-Caspe9j9hI1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
BA [auth 8]Beta-Caspe9j9h81 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
CA [auth y]Beta-Caspe9j9hy1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
EA [auth 9]Beta-Caspe9j9h91 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
HA [auth a]Beta-Caspe9j9ha1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
IA [auth AA]Beta-Caspe9j9hAA1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
JA [auth L]Beta-Caspe9j9hL1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
KA [auth b]Beta-Caspe9j9hb1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
LA [auth AB]Beta-Caspe9j9hAB1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
NA [auth c]Beta-Caspe9j9hc1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
OA [auth AC]Beta-Caspe9j9hAC1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
PA [auth N]Beta-Caspe9j9hN1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
QA [auth d]Beta-Caspe9j9hd1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
SA [auth O]Beta-Caspe9j9hO1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
TA [auth e]Beta-Caspe9j9he1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
UA [auth AE]Beta-Caspe9j9hAE1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
VA [auth P]Beta-Caspe9j9hP1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
WA [auth f]Beta-Caspe9j9hf1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
XA [auth AF]Beta-Caspe9j9hAF1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
YA [auth Q]Beta-Caspe9j9hQ1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
ZA [auth g]Beta-Caspe9j9hg1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
AB [auth AG]Beta-Caspe9j9hAG1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
BB [auth R]Beta-Caspe9j9hR1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
CB [auth h]Beta-Caspe9j9hh1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
DB [auth AH]Beta-Caspe9j9hAH1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
EB [auth S]Beta-Caspe9j9hS1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
FB [auth i]Beta-Caspe9j9hi1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
GB [auth AI]Beta-Caspe9j9hAI1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
HB [auth T]Beta-Caspe9j9hT1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
JB [auth AJ]Beta-Caspe9j9hAJ1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
KB [auth U]Beta-Caspe9j9hU1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
LB [auth k]Beta-Caspe9j9hk1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
MB [auth AK]Beta-Caspe9j9hAK1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
NB [auth V]Beta-Caspe9j9hV1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
OB [auth l]Beta-Caspe9j9hl1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
PB [auth AL]Beta-Caspe9j9hAL1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
QB [auth W]Beta-Caspe9j9hW1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
RB [auth m]Beta-Caspe9j9hm1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
TB [auth X]Beta-Caspe9j9hX1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
UB [auth n]Beta-Caspe9j9hn1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
VB [auth AN]Beta-Caspe9j9hAN1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
WB [auth Y]Beta-Caspe9j9hY1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
XB [auth o]Beta-Caspe9j9ho1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
ZB [auth Z]Beta-Caspe9j9hZ1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
AC [auth p]Beta-Caspe9j9hp1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
YB [auth AO]Beta-Caspe9j9hAO1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
SB [auth AM]Beta-Caspe9j9hAM1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
RA [auth AD]Beta-Caspe9j9hAD1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
MA [auth M]Beta-Caspe9j9hM1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
GA [auth K]Beta-Caspe9j9hK1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
FA [auth z]Beta-Caspe9j9hz1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
DA [auth J]Beta-Caspe9j9hJ1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
Z [auth x]Beta-Caspe9j9hx1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
Y [auth 7]Beta-Caspe9j9h71 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
R [auth F]Beta-Caspe9j9hF1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)
Q [auth u]Beta-Caspe9j9hu1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Beta-CaspECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
B [auth 0]PF01246Ribosomal protein L24e (Ribosomal_L24e)Ribosomal protein L24eDomain
E [auth B]PF01158Ribosomal protein L36e (Ribosomal_L36e)Ribosomal protein L36e- Family
F [auth 1]PF01777Ribosomal L27e protein family (Ribosomal_L27e)Ribosomal L27e protein familyThe N-terminal region of the eukaryotic ribosomal L27 has the KOW motif. C-terminal region is represented by this family. Domain
H [auth AR]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
I [auth C]PF01907Ribosomal protein L37e (Ribosomal_L37e)Ribosomal protein L37e- Family
J [auth 2]PF01778Ribosomal L28e protein family (Ribosomal_L28e)Ribosomal L28e protein family- Family
L [auth D]PF03947Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C)Ribosomal Proteins L2, C-terminal domainDomain
L [auth D]PF01781Ribosomal L38e protein family (Ribosomal_L38e)Ribosomal L38e protein familyDomain
M [auth 3]PF00831Ribosomal L29 protein (Ribosomal_L29)Ribosomal L29 protein- Family
O [auth E]PF00832Ribosomal L39 protein (Ribosomal_L39)Ribosomal L39 protein- Family
P [auth 4]PF01779Ribosomal L29e protein family (Ribosomal_L29e)Ribosomal L29e protein family- Family
S [auth 5]PF00327Ribosomal protein L30p/L7e (Ribosomal_L30)Ribosomal protein L30p/L7eThis family includes prokaryotic L30 and eukaryotic L7. Domain
U [auth G]PF05162Ribosomal protein L41 (Ribosomal_L41)Ribosomal protein L41- Family
U [auth G]PF00673ribosomal L5P family C-terminus (Ribosomal_L5_C)ribosomal L5P family C-terminusThis region is found associated with Pfam:PF00281. Domain
V [auth 6]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
X [auth H]PF00347Ribosomal protein L6 (Ribosomal_L6)Ribosomal protein L6Domain
X [auth H]PF01780Ribosomal L37ae protein family (Ribosomal_L37ae)Ribosomal L37ae protein family- Family
AA [auth I]PF00935Ribosomal protein L44 (Ribosomal_L44)Ribosomal protein L44- Family
AA [auth I]PF01159Ribosomal protein L6e (Ribosomal_L6e)Ribosomal protein L6e- Family
BA [auth 8]PF01655Ribosomal protein L32 (Ribosomal_L32e)Ribosomal protein L32- Family
EA [auth 9]PF01247Ribosomal protein L35Ae (Ribosomal_L35Ae)Ribosomal protein L35AeThis entry represents the ribosomal eL33 previously known as L35A, eukaryotic and archaebacterial ribosomal proteins. Domain
IA [auth AA]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
JA [auth L]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
JA [auth L]PF01294Ribosomal protein L13e (Ribosomal_L13e)Ribosomal protein L13e- Family
LA [auth AB]PF00416Ribosomal protein S13/S18 (Ribosomal_S13)Ribosomal protein S13/S18- Family
OA [auth AC]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
PA [auth N]PF01929Ribosomal protein L14 (Ribosomal_L14e)Ribosomal protein L14- Family
PA [auth N]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
PA [auth N]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
SA [auth O]PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
SA [auth O]PF08071RS4NT (NUC023) domain (RS4NT)RS4NT (NUC023) domainThis is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1]. Domain
SA [auth O]PF00828Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A)Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27AThis family includes higher eukaryotic ribosomal 60S L27A, archaeal 50S L18e, prokaryotic 50S L15, fungal mitochondrial L10, plant L27A, mitochondrial L15 and chloroplast L18-3 proteins. Domain
UA [auth AE]PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
UA [auth AE]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17Domain
VA [auth P]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domainDomain
VA [auth P]PF00827Ribosomal L15 (Ribosomal_L15e)Ribosomal L15- Family
VA [auth P]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domainDomain
YA [auth Q]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
YA [auth Q]PF00252Ribosomal protein L16p/L10e (Ribosomal_L16)Ribosomal protein L16p/L10eDomain
AB [auth AG]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19Domain
BB [auth R]PF17144Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e)Ribosomal large subunit proteins 60S L5, and 50S L18- Family
BB [auth R]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. Domain
BB [auth R]PF14204Ribosomal L18 C-terminal region (Ribosomal_L18_c)Ribosomal L18 C-terminal regionThis domain is the C-terminal end of ribosomal L18/L5 proteins. Domain
DB [auth AH]PF01090Ribosomal protein S19e (Ribosomal_S19e)Ribosomal protein S19e- Family
EB [auth S]PF01251Ribosomal protein S7e (Ribosomal_S7e)Ribosomal protein S7e- Family
EB [auth S]PF17135Ribosomal protein 60S L18 and 50S L18e (Ribosomal_L18)Ribosomal protein 60S L18 and 50S L18e- Family
GB [auth AI]PF01249Ribosomal protein S21e (Ribosomal_S21e)Ribosomal protein S21e- Family
HB [auth T]PF01280Ribosomal protein L19e, N-terminal domain (Ribosomal_L19e)Ribosomal protein L19e, N-terminal domainThis domain is found at the N-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology. Domain
HB [auth T]PF25476Ribosomal protein L19e, C-terminal domain (Ribosomal_L19e_C)Ribosomal protein L19e, C-terminal domainThis domain is found at the C-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology. Domain
HB [auth T]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8Domain
JB [auth AJ]PF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family
KB [auth U]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
KB [auth U]PF01775Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18AThis family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A. Domain
NB [auth V]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
QB [auth W]PF00237Ribosomal protein L22p/L17e (Ribosomal_L22)Ribosomal protein L22p/L17eThis family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Domain
QB [auth W]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. Domain
TB [auth X]PF03501Plectin/S10 domain (S10_plectin)Plectin/S10 domainThis presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding. Domain
VB [auth AN]PF01200Ribosomal protein S28e (Ribosomal_S28e)Ribosomal protein S28eDomain
WB [auth Y]PF00276Ribosomal protein L23 (Ribosomal_L23)Ribosomal protein L23- Family
WB [auth Y]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family
ZB [auth Z]PF16906Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26)Ribosomal proteins L26 eukaryotic, L24P archaeal- Family
ZB [auth Z]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. Domain
ZB [auth Z]PF00467KOW motif (KOW)KOW motif- Family
BC [auth AP]PF01599Ribosomal protein S27a (Ribosomal_S27)Ribosomal protein S27aThis family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ...This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins as extensions of ubiquitin promotes their incorporation into nascent ribosomes by a transient metabolic stabilisation and is required for efficient ribosome biogenesis [3]. The ribosomal extension protein S27a contains a basic region that is proposed to form a zinc finger; its fusion gene is proposed as a mechanism to maintain a fixed ratio between ubiquitin necessary for degrading proteins and ribosomes a source of proteins [2].
Domain
SB [auth AM]PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
RA [auth AD]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15Domain
MA [auth M]PF00238Ribosomal protein L14p/L23e (Ribosomal_L14)Ribosomal protein L14p/L23eDomain
MA [auth M]PF07650KH domain (KH_2)KH domainDomain
MA [auth M]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. Domain
GA [auth K]PF00572Ribosomal protein L13 (Ribosomal_L13)Ribosomal protein L13- Family
Y [auth 7]PF01198Ribosomal protein L31e (Ribosomal_L31e)Ribosomal protein L31e- Family
R [auth F]PF01020Ribosomal L40e family (Ribosomal_L40e)Ribosomal L40e familyBovine L40 has been identified as a secondary RNA binding protein [1]. L40 is fused to a ubiquitin protein [2]. Domain
R [auth F]PF1437460S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C)60S ribosomal protein L4 C-terminal domainThis family is found at the very C-terminal of 60 ribosomal L4 proteins. Domain
R [auth F]PF00573Ribosomal protein L4/L1 family (Ribosomal_L4)Ribosomal protein L4/L1 family- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
28S ribosomal RNA---
B [auth 0]60S ribosomal protein L24, putative---
C [auth q]40S ribosomal protein S6---
D [auth AQ]tRNA---
E [auth B]5S ribosomal RNA---
F [auth 1]60S ribosomal protein L27---
G [auth r]40S ribosomal protein S5, putative---
H [auth AR]Receptor for activated c kinase
I [auth C]5.8S ribosomal RNA---
J [auth 2]60S ribosomal protein L28---
K [auth s]40S ribosomal protein S7---
L [auth D]60S ribosomal protein L2---
M [auth 3]60S ribosomal protein L35, putative---
N [auth t]40S ribosomal protein S15A, putative---
O [auth E]60S ribosomal protein L3---
P [auth 4]60S ribosomal protein L29
S [auth 5]60S ribosomal protein L7, putative---
T [auth v]40S ribosomal protein S16, putative---
U [auth G]60S ribosomal protein L11a, putative---
V [auth 6]60S ribosomal protein L30e, putative---
W [auth w]40S ribosomal protein S20e, putative---
X [auth H]60S ribosomal protein L6, putative---
AA [auth I]60S ribosomal protein L6, putative
BA [auth 8]60S ribosomal protein L32---
CA [auth y]40S ribosomal protein S11
EA [auth 9]60S ribosomal protein L35ae, putative---
HA [auth a]60S ribosomal protein L34---
IA [auth AA]Small ribosomal subunit protein eS12
JA [auth L]60S ribosomal protein L13---
KA [auth b]60S ribosomal protein L36---
LA [auth AB]40S ribosomal protein S18, putative---
NA [auth c]Ribosomal protein L37---
OA [auth AC]40S ribosomal protein S29, putative---
PA [auth N]60S ribosomal protein L14, putative---
QA [auth d]60S ribosomal protein L38---
SA [auth O]60S ribosomal protein L27a, putative---
TA [auth e]60S ribosomal protein L39---
UA [auth AE]40S ribosomal protein S11, putative---
VA [auth P]Ribosomal protein L15---
WA [auth f]Ubiquitin-60S ribosomal protein L40---
XA [auth AF]40S ribosomal protein S17, putative---
YA [auth Q]60S ribosomal protein L10, putative---
ZA [auth g]60S ribosomal protein L41
AB [auth AG]40S ribosomal protein S19---
BB [auth R]60S ribosomal protein L5, putative---
CB [auth h]Large ribosomal subunit protein eL43
DB [auth AH]40S ribosomal protein S19---
EB [auth S]60S ribosomal protein L18-2, putative---
FB [auth i]Large ribosomal subunit protein eL42
GB [auth AI]40S ribosomal protein S21---
HB [auth T]60S ribosomal protein L19---
IB [auth j]18S ribosomal RNA---
JB [auth AJ]40S ribosomal protein S24---
KB [auth U]60S ribosomal protein L18a---
LB [auth k]Small ribosomal subunit protein eS1
MB [auth AK]40S ribosomal protein S25---
NB [auth V]60S ribosomal protein L21---
OB [auth l]Small ribosomal subunit protein uS2
PB [auth AL]40S ribosomal protein S26---
QB [auth W]60S ribosomal protein L17, putative---
RB [auth m]40S ribosomal protein S3---
TB [auth X]Large ribosomal subunit protein eL22---
UB [auth n]40S ribosomal protein S9, putative---
VB [auth AN]40S ribosomal protein S28e, putative---
WB [auth Y]60S ribosomal protein L23---
XB [auth o]40S ribosomal protein S4---
ZB [auth Z]60S ribosomal protein L26, putative---
AC [auth p]40S ribosomal protein S5---
BC [auth AP]Ribosomal protein S27a, putative
YB [auth AO]Small ribosomal subunit protein eS30
SB [auth AM]40S ribosomal protein S27---
RA [auth AD]40S ribosomal protein S15---
MA [auth M]60S ribosomal protein L23, putative---
GA [auth K]60S ribosomal protein L13, putative---
FA [auth z]40S ribosomal protein S23, putative---
DA [auth J]60S ribosomal protein L7a---
Z [auth x]40S ribosomal protein S10, putative---
Y [auth 7]60S ribosomal protein L31---
R [auth F]60S ribosomal protein L4---
Q [auth u]40S ribosomal protein S8---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
H [auth AR]IPR019775WD40 repeat, conserved siteConserved Site
H [auth AR]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
H [auth AR]IPR045223Small ribosomal subunit protein RACK1-likeFamily
H [auth AR]IPR020472PAC1/LIS1-like, WD-40 repeatRepeat
H [auth AR]IPR001680WD40 repeatRepeat
H [auth AR]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
P [auth 4]IPR002673Large ribosomal subunit protein eL29Family
AA [auth I]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
AA [auth I]IPR008991Translation protein SH3-like domain superfamilyHomologous Superfamily
AA [auth I]IPR000915Large ribosomal subunit protein eL6Family
CA [auth y]IPR001971Small ribosomal subunit protein uS11Family
CA [auth y]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
CA [auth y]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
IA [auth AA]IPR000530Small ribosomal subunit protein eS12Family
IA [auth AA]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
IA [auth AA]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
IA [auth AA]IPR047860Small ribosomal subunit protein eS12, conserved siteConserved Site
ZA [auth g]IPR007836Large ribosomal subunit protein eS32Family
CB [auth h]IPR002674Large ribosomal subunit protein eL43Family
CB [auth h]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
CB [auth h]IPR011331Large ribosomal subunit protein eL37/eL43Homologous Superfamily
CB [auth h]IPR050522Eukaryotic ribosomal protein eL43Family
FB [auth i]IPR053708Eukaryotic Ribosomal Large Subunit eL42Homologous Superfamily
FB [auth i]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
FB [auth i]IPR000552Large ribosomal subunit protein eL42Family
LB [auth k]IPR001593Small ribosomal subunit protein eS1Family
LB [auth k]IPR027500Small ribosomal subunit protein eS1, eukaryotaFamily
OB [auth l]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
OB [auth l]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
OB [auth l]IPR001865Small ribosomal subunit protein uS2Family
OB [auth l]IPR005707Small ribosomal subunit protein uS2, eukaryota/archaeaFamily
OB [auth l]IPR027498Small ribosomal subunit protein uS2, eukaryotaFamily
BC [auth AP]IPR000626Ubiquitin-like domainDomain
BC [auth AP]IPR038582Small ribosomal subunit protein eS31 eukaryotic superfamilyHomologous Superfamily
BC [auth AP]IPR002906Small ribosomal subunit protein eS31Domain
BC [auth AP]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
BC [auth AP]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
BC [auth AP]IPR047154Ubiquitin-like protein 4A-likeFamily
YB [auth AO]IPR006846Small ribosomal subunit protein eS30Family