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 9I7U | pdb_00009i7u

Cryo-EM structure of NDUFA4 bound complex IV within the respirasome complex


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ISCOP2B SuperfamilyMitochondrial cytochrome c oxidase subunit VIc 8093998 3000598 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyCytochrome c oxidase subunit h 8094433 3000395 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyMitochondrial cytochrome c oxidase subunit VIa 8094056 3000592 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyRubredoxin-like 8093876 3001257 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyCytochrome c oxidase subunit E 8094335 3001402 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyMitochondrial cytochrome c oxidase subunit IV 8093930 3000582 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyCytochrome c oxidase subunit III-like 8094417 3000671 SCOP2B (2022-06-29)
MSCOP2B SuperfamilyMitochondrial cytochrome c oxidase subunit VIIIb (aka IX) 8095689 3000633 SCOP2B (2022-06-29)
LSCOP2B SuperfamilyMitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) 8094535 3000624 SCOP2B (2022-06-29)
KSCOP2B SuperfamilyMitochondrial cytochrome c oxidase subunit VIIb 8094463 3000613 SCOP2B (2022-06-29)
JSCOP2B SuperfamilyMitochondrial cytochrome c oxidase subunit VIIa 8094110 3000606 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyCytochrome c oxidase subunit I-like 8094379 3000653 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
Ie9i7uI1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF:ECOD (v295.2)
HRVT_1e9i7uH1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: RVT_1ECOD (v295.2)
Ge9i7uG1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF:ECOD (v295.2)
Fe9i7uF1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF:ECOD (v295.2)
ERVT_1e9i7uE1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: RVT_1ECOD (v295.2)
DRVT_1e9i7uD1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: RVT_1ECOD (v295.2)
CPCIe9i7uC1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PCIECOD (v295.2)
BPCIe9i7uB1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PCIECOD (v295.2)
Me9i7uM1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF:ECOD (v295.2)
LPCIe9i7uL1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PCIECOD (v295.2)
Ke9i7uK1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF:ECOD (v295.2)
Je9i7uJ1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF:ECOD (v295.2)
APCIe9i7uA1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PCIECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF02937Cytochrome c oxidase subunit VIc (COX6C)Cytochrome c oxidase subunit VIc- Family
PF02297Cytochrome oxidase c subunit VIb (COX6B)Cytochrome oxidase c subunit VIbCytochrome c oxidase, a 13 sub-unit complex, EC:1.9.3.1 is the terminal oxidase in the mitochondrial electron transport chain. This family is composed of the potentially heme-binding subunit IVb of the oxidase. Domain
PF00510Cytochrome c oxidase subunit III (COX3)Cytochrome c oxidase subunit IIIDomain
PF00116Cytochrome C oxidase subunit II, periplasmic domain (COX2)Cytochrome C oxidase subunit II, periplasmic domainDomain
PF02790Cytochrome C oxidase subunit II, transmembrane domain (COX2_TM)Cytochrome C oxidase subunit II, transmembrane domain- Family
PF06522NADH-ubiquinone reductase complex 1 MLRQ subunit (B12D)NADH-ubiquinone reductase complex 1 MLRQ subunit- Family
PF02285Cytochrome oxidase c subunit VIII (COX8)Cytochrome oxidase c subunit VIII- Family
PF02238Cytochrome c oxidase subunit VII (COX7a)Cytochrome c oxidase subunit VII- Family
PF00115Cytochrome C and Quinol oxidase polypeptide I (COX1)Cytochrome C and Quinol oxidase polypeptide I- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Cytochrome c oxidase subunit 6C-
Cytochrome c oxidase subunit 6B1
Cytochrome c oxidase subunit 6A1, mitochondrial
Cytochrome c oxidase subunit 5B, mitochondrial
Cytochrome c oxidase subunit 5A, mitochondrial
Cytochrome c oxidase subunit 4 isoform 1, mitochondrial
Cytochrome c oxidase subunit 3
Cytochrome c oxidase subunit 2
Cytochrome c oxidase subunit NDUFA4
Cytochrome c oxidase subunit 8A, mitochondrial
Cytochrome c oxidase subunit 7C, mitochondrial-
Cytochrome c oxidase subunit 7B, mitochondrial
Cytochrome c oxidase subunit 7A2, mitochondrial
Cytochrome c oxidase subunit 1

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR037169Mitochondrial cytochrome c oxidase subunit VIc/VIIs superfamilyHomologous Superfamily
IPR051389Cytochrome c oxidase subunit VIcFamily
IPR034884Mitochondrial cytochrome c oxidase subunit VIc/VIIsFamily
IPR036549Cytochrome c oxidase subunit 6B/Cytochrome c oxidase assembly factor 6-like superfamilyHomologous Superfamily
IPR048280Cytochrome oxidase c subunit VIb-likeFamily
IPR003213Cytochrome c oxidase, subunit VIbFamily
IPR018507Cytochrome c oxidase, subunit VIa, conserved siteConserved Site
IPR036418Cytochrome c oxidase, subunit VIa superfamilyHomologous Superfamily
IPR001349Cytochrome c oxidase, subunit VIaFamily
IPR002124Cytochrome c oxidase, subunit VbFamily
IPR036972Cytochrome c oxidase, subunit Vb superfamilyHomologous Superfamily
IPR003204Cytochrome c oxidase, subunit Va/VIFamily
IPR036545Cytochrome c oxidase, subunit Va/VI superfamilyHomologous Superfamily
IPR004203Cytochrome c oxidase subunit IV familyFamily
IPR013288Cytochrome c oxidase subunit IVFamily
IPR036639Cytochrome c oxidase subunit IV superfamilyHomologous Superfamily
IPR035973Cytochrome c oxidase subunit III-like superfamilyHomologous Superfamily
IPR000298Cytochrome c oxidase subunit III-likeDomain
IPR033945Cytochrome c oxidase subunit III domainDomain
IPR013833Cytochrome c oxidase, subunit III, 4-helical bundleHomologous Superfamily
IPR024791Cytochrome c oxidase subunit IIIFamily
IPR011759Cytochrome C oxidase subunit II, transmembrane domainDomain
IPR036257Cytochrome C oxidase subunit II, transmembrane domain superfamilyHomologous Superfamily
IPR034210Cytochrome c oxidase subunit 2, C-terminalDomain
IPR045187Cytochrome c/quinol oxidase subunit IIFamily
IPR002429Cytochrome c oxidase subunit II-like C-terminalDomain
IPR008972CupredoxinHomologous Superfamily
IPR001505Copper centre Cu(A)Binding Site
IPR014222Cytochrome c oxidase, subunit IIDomain
IPR010530NADH-ubiquinone reductase complex 1 MLRQ subunitFamily
IPR003205Cytochrome c oxidase, subunit 8Family
IPR036548Cytochrome c oxidase, subunit 8 superfamilyHomologous Superfamily
IPR036636Cytochrome c oxidase subunit VIIc superfamilyHomologous Superfamily
IPR004202Cytochrome c oxidase subunit VIIcFamily
IPR023272Cytochrome C oxidase, subunit VIIB domain superfamilyHomologous Superfamily
IPR008433Cytochrome C oxidase, subunit VIIBFamily
IPR003177Cytochrome c oxidase subunit VIIa, metazoaFamily
IPR036539Cytochrome c oxidase, subunit VIIa superfamilyHomologous Superfamily
IPR039297Cytochrome c oxidase subunit VIIFamily
IPR036927Cytochrome c oxidase-like, subunit I superfamilyHomologous Superfamily
IPR000883Cytochrome c oxidase subunit IFamily
IPR023615Cytochrome c oxidase, subunit I, copper-binding siteBinding Site
IPR023616Cytochrome c oxidase-like, subunit I domainDomain
IPR033944Cytochrome c oxidase subunit I domainDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
:  P09669
:  P14854
:  P12074
:  P10606
:  P20674
:  P13073
:  P00414
:  P00403
:  O00483
:  P10176
:  P15954
:  P24311
:  P14406
:  P00395

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
FME Parent Component: MET

:  AA0021 , AA0566

:  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891
FME Parent Component: MET

:  AA0021 , AA0566 , AA0021 , AA0566

:  N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891 , N-formyl-L-methionine residue MOD:00030 , N-formyl-L-methionine (Met) MOD:00482 , N-[(L-histidin-1'-yl)methyl]-L-methionine (fMet) MOD:01890 , N-[(L-histidin-1'-yl)methyl]-L-methionine (Met) MOD:01891