Annotations: 9HMH

Crystal structure of the Calf domains of Integrin Alpha5

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF20805	Integrin alpha Ig-like domain 2 (Integrin_A_Ig_2)	Integrin alpha Ig-like domain 2	This domain is found in integrin alpha and integrin alpha precursors to the C terminus of a number of Pfam:PF01839 repeats and to the N-terminus of the Pfam:PF00357 cytoplasmic region. This region is composed of an immunoglobulin-like domain.	Domain
A	PF20806	Integrin alpha Ig-like domain 3 (Integrin_A_Ig_3)	Integrin alpha Ig-like domain 3	This domain is found in integrin alpha and integrin alpha precursors to the C terminus of a number of Pfam:PF01839 repeats and to the N-terminus of the Pfam:PF00357 cytoplasmic region. This region is composed of an immunoglobulin-like domain.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Integrin alpha-5	protein binding binding signaling receptor binding platelet-derived growth factor receptor binding growth factor receptor binding virus receptor activity exogenous protein binding cation binding ion binding calcium ion binding metal ion binding small molecule binding molecular transducer activity signaling receptor activity protein binding binding signaling receptor binding platelet-derived growth factor receptor binding growth factor receptor binding virus receptor activity exogenous protein binding cation binding ion binding calcium ion binding metal ion binding small molecule binding molecular transducer activity signaling receptor activity cell adhesion molecule binding protein-containing complex binding integrin binding epidermal growth factor receptor binding cytokine receptor binding vascular endothelial growth factor receptor binding vascular endothelial growth factor receptor 2 binding	response to stimulus response to activity response to muscle activity regulation of biological process regulation of cellular process regulation of cell-substrate adhesion positive regulation of cell adhesion regulation of cell adhesion biological regulation positive regulation of biological process cell-substrate adhesion cell adhesion positive regulation of cell-substrate adhesion cellular process response to stimulus response to activity response to muscle activity regulation of biological process regulation of cellular process regulation of cell-substrate adhesion positive regulation of cell adhesion regulation of cell adhesion biological regulation positive regulation of biological process cell-substrate adhesion cell adhesion positive regulation of cell-substrate adhesion cellular process positive regulation of cellular process cellular response to stimulus positive regulation of cell communication cellular response to growth factor stimulus positive regulation of signal transduction signaling regulation of signal transduction cell surface receptor protein tyrosine kinase signaling pathway cell communication regulation of vascular endothelial growth factor receptor signaling pathway positive regulation of response to stimulus cellular response to endogenous stimulus signal transduction enzyme-linked receptor protein signaling pathway regulation of signaling cell surface receptor signaling pathway response to endogenous stimulus regulation of cellular response to growth factor stimulus vascular endothelial growth factor receptor signaling pathway regulation of response to stimulus positive regulation of vascular endothelial growth factor receptor signaling pathway regulation of cell communication response to growth factor positive regulation of signaling catabolic process autophagy metabolic process process utilizing autophagic mechanism negative regulation of programmed cell death regulation of apoptotic process regulation of anoikis negative regulation of biological process regulation of programmed cell death cell death negative regulation of anoikis negative regulation of apoptotic process anoikis negative regulation of cellular process apoptotic process programmed cell death regulation of vascular endothelial growth factor signaling pathway regulation of cellular response to vascular endothelial growth factor stimulus positive regulation of vascular endothelial growth factor signaling pathway vascular endothelial growth factor signaling pathway cellular response to vascular endothelial growth factor stimulus behavior multicellular organismal process system process learning or memory nervous system process cognition memory heterophilic cell-cell adhesion cell-cell adhesion CD40 signaling pathway developmental process wound healing epithelium development morphogenesis of an epithelium epiboly involved in wound healing tissue development morphogenesis of an epithelial sheet wound healing, spreading of epidermal cells tissue morphogenesis anatomical structure morphogenesis response to stress anatomical structure development epiboly cell migration wound healing, spreading of cells cell motility response to wounding negative regulation of catabolic process negative regulation of metabolic process regulation of catabolic process regulation of autophagy negative regulation of autophagy regulation of metabolic process leukocyte cell-cell adhesion heterotypic cell-cell adhesion cell-cell adhesion mediated by integrin cell adhesion mediated by integrin cell-matrix adhesion blood vessel morphogenesis tube development angiogenesis vasculature development circulatory system development multicellular organism development tube morphogenesis anatomical structure formation involved in morphogenesis blood vessel development system development multi-multicellular organism process reproductive process female pregnancy multi-organism reproductive process formation of primary germ layer cellular developmental process embryonic morphogenesis embryo development gastrulation endoderm development cell differentiation endoderm formation endodermal cell differentiation integrin-mediated signaling pathway cellular component organization cellular component biogenesis cell junction organization cellular component assembly cell junction assembly cell-substrate junction assembly cell-substrate junction organization cellular component organization or biogenesis positive regulation of locomotion regulation of cell motility positive regulation of cell migration regulation of locomotion positive regulation of cell motility regulation of cell migration locomotion regulation of sprouting angiogenesis regulation of developmental process regulation of vasculature development positive regulation of developmental process positive regulation of sprouting angiogenesis regulation of multicellular organismal process regulation of anatomical structure morphogenesis regulation of multicellular organismal development positive regulation of angiogenesis sprouting angiogenesis positive regulation of vasculature development regulation of angiogenesis positive regulation of multicellular organismal process	cell periphery postsynapse cellular anatomical structure postsynaptic membrane synapse cell junction membrane plasma membrane plasma membrane region synaptic membrane cell surface external side of plasma membrane side of membrane protein-containing complex cell periphery postsynapse cellular anatomical structure postsynaptic membrane synapse cell junction membrane plasma membrane plasma membrane region synaptic membrane cell surface external side of plasma membrane side of membrane protein-containing complex integrin alpha5-beta1 complex plasma membrane protein complex membrane protein complex integrin complex plasma membrane signaling receptor complex signaling receptor complex protein complex involved in cell adhesion glutamatergic synapse membrane-bounded organelle intracellular organelle intracellular anatomical structure Golgi apparatus organelle cytoplasm intracellular membrane-bounded organelle endomembrane system ruffle cell projection cell leading edge plasma membrane bounded cell projection anchoring junction focal adhesion cell-substrate junction alphav-beta3 integrin-vitronectin complex cytoplasmic vesicle intracellular vesicle vesicle endoplasmic reticulum

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR013517	FG-GAP repeat	Repeat
A	IPR048286	Integrin alpha, third immunoglobulin-like domain	Domain
A	IPR013649	Integrin alpha, first immunoglubulin-like domain	Domain
A	IPR048285	Integrin alpha, second immunoglobulin-like domain	Domain
A	IPR032695	Integrin domain superfamily	Homologous Superfamily
A	IPR013519	Integrin alpha beta-propellor	Repeat
A	IPR000413	Integrin alpha chain	Family
A	IPR028994	Integrin alpha, N-terminal	Homologous Superfamily
A	IPR018184	Integrin alpha chain, C-terminal cytoplasmic region, conserved site	Conserved Site

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	: P08648	squamous cell carcinoma Gliosis pancreatic ductal adenocarcinoma ulcerative colitis gastric carcinoma ischemia reperfusion injury malignant colon neoplasm malignant mesothelioma non-small cell lung carcinoma psoriasis subependymal giant cell astrocytoma breast cancer gastric neoplasm hereditary diffuse gastric adenocarcinoma lung adenocarcinoma squamous cell carcinoma Gliosis pancreatic ductal adenocarcinoma ulcerative colitis gastric carcinoma ischemia reperfusion injury malignant colon neoplasm malignant mesothelioma non-small cell lung carcinoma psoriasis subependymal giant cell astrocytoma breast cancer gastric neoplasm hereditary diffuse gastric adenocarcinoma lung adenocarcinoma malignant ependymoma osteosarcoma tuberculosis gastric cancer glioblastoma interstitial cystitis lung carcinoma malignant glioma

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

9HMH | pdb_00009hmh

Crystal structure of the Calf domains of Integrin Alpha5

External Resource: Annotation

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

Pharos: Disease Associations Pharos Homepage Annotation