9H52 | pdb_00009h52

Assembly intermediate of human mitochondrial ribosome small subunit in complex with NOA1, ERAL1, METTL17, MCAT and TFB1M (state N1)


Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth a]GTPase Era, mitochondrial
B [auth 0]Small ribosomal subunit protein mS34
C [auth 9]Nitric oxide-associated protein 1
28S ribosomal protein S5, mitochondrial
28S ribosomal protein S6, mitochondrial
F [auth J]28S ribosomal protein S12, mitochondrial
G [auth L]28S ribosomal protein S15, mitochondrial
H [auth M]28S ribosomal protein S16, mitochondrial
I [auth N]28S ribosomal protein S17, mitochondrial
J [auth O]28S ribosomal protein S18b, mitochondrial
K [auth P]28S ribosomal protein S18c, mitochondrial
L [auth Q]MRPS21 isoform 1
M [auth R]28S ribosomal protein S22, mitochondrial
N [auth S]28S ribosomal protein S23, mitochondrial
O [auth T]28S ribosomal protein S25, mitochondrial
P [auth U]28S ribosomal protein S26, mitochondrial
Q [auth A]12S mitochondrial rRNA---
R [auth B]28S ribosomal protein S2, mitochondrial
S [auth W]28S ribosomal protein S28, mitochondrial
T [auth C]28S ribosomal protein S24, mitochondrial
U [auth F]28S ribosomal protein S7, mitochondrial
V [auth G]28S ribosomal protein S9, mitochondrial
W [auth X]28S ribosomal protein S29, mitochondrial
X [auth Y]28S ribosomal protein S31, mitochondrial
Y [auth 1]28S ribosomal protein S35, mitochondrial
Z [auth 4]Pentatricopeptide repeat domain-containing protein 3, mitochondrial
AA [auth 8]Malonyl-CoA-acyl carrier protein transacylase, mitochondrial
BA [auth 7]Isoform 2 of Ribosome assembly protein METTL17, mitochondrial
CA [auth 5]Dimethyladenosine transferase 1, mitochondrial
DA [auth V]28S ribosomal protein S27, mitochondrial

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth a]IPR005225Small GTP-binding domainDomain
A [auth a]IPR030388Era-type guanine nucleotide-binding (G) domainDomain
A [auth a]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
A [auth a]IPR005662GTPase Era-likeFamily
A [auth a]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
A [auth a]IPR006073GTP binding domainDomain
A [auth a]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
B [auth 0]IPR032053Small ribosomal subunit protein mS34Family
C [auth 9]IPR030378Circularly permuted (CP)-type guanine nucleotide-binding (G) domainDomain
C [auth 9]IPR052807Mitochondrial translation and respiration regulatorFamily
C [auth 9]IPR006073GTP binding domainDomain
C [auth 9]IPR048422NOA1/YqeH-like, C-terminal domainDomain
C [auth 9]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
IPR000851Small ribosomal subunit protein uS5Family
IPR048584Small ribosomal subunit protein uS5m, N-terminal domainDomain
IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
IPR000529Small ribosomal subunit protein bS6Family
IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
F [auth J]IPR006032Small ribosomal subunit protein uS12Family
F [auth J]IPR005679Ribosomal protein uS12, bacteriaFamily
F [auth J]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
G [auth L]IPR005290Small ribosomal subunit protein uS15, bacteriaFamily
G [auth L]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
G [auth L]IPR052137Universal small ribosomal subunit uS15Family
G [auth L]IPR000589Small ribosomal subunit protein uS15Family
H [auth M]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
H [auth M]IPR000307Small ribosomal subunit protein bS16Family
I [auth N]IPR039193Small ribosomal subunit protein uS17m, metazoaFamily
I [auth N]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
I [auth N]IPR000266Small ribosomal subunit protein uS17Family
J [auth O]IPR040054Small ribosomal subunit protein mS40Family
J [auth O]IPR001648Small ribosomal subunit protein bS18Family
J [auth O]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
K [auth P]IPR001648Small ribosomal subunit protein bS18Family
K [auth P]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
K [auth P]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
L [auth Q]IPR038380Small ribosomal subunit protein bS21 superfamilyHomologous Superfamily
L [auth Q]IPR001911Small ribosomal subunit protein bS21Family
M [auth R]IPR019374Small ribosomal subunit protein mS22Family
N [auth S]IPR059242Small ribosomal subunit protein mS23, conserved domainDomain
N [auth S]IPR019520Small ribosomal subunit protein mS23, metazoaFamily
N [auth S]IPR023611Small ribosomal subunit protein mS23, conserved domain, metazoaDomain
O [auth T]IPR007741Ribosomal protein/NADH dehydrogenase domainDomain
O [auth T]IPR036249Thioredoxin-like superfamilyHomologous Superfamily
O [auth T]IPR040049Ribosomal subunit protein mS25/mL61, mitochondrialFamily
P [auth U]IPR026140Small ribosomal subunit protein mS26Family
R [auth B]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
R [auth B]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
R [auth B]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
R [auth B]IPR001865Small ribosomal subunit protein uS2Family
S [auth W]IPR019375Small ribosomal subunit protein bS1mFamily
T [auth C]IPR026146Small ribosomal subunit protein uS3m, metazoanFamily
U [auth F]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
U [auth F]IPR000235Small ribosomal subunit protein uS7Family
U [auth F]IPR023798Small ribosomal subunit protein uS7 domainDomain
V [auth G]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
V [auth G]IPR023035Small ribosomal subunit protein uS9, bacteria/plastidFamily
V [auth G]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
V [auth G]IPR000754Small ribosomal subunit protein uS9Family
V [auth G]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
W [auth X]IPR019368Small ribosomal subunit protein mS29Family
W [auth X]IPR008092Small ribosomal subunit protein mS29, metazoaFamily
W [auth X]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
X [auth Y]IPR026299Mitochondrial 28S ribosomal protein S31Family
Y [auth 1]IPR039848Small ribosomal subunit protein mS35, mitochondrialFamily
Y [auth 1]IPR019349Small ribosomal subunit protein mS35, mitochondrial, conserved domainDomain
Z [auth 4]IPR037387Pentatricopeptide repeat domain-containing protein 3Family
Z [auth 4]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
Z [auth 4]IPR002885Pentatricopeptide repeatRepeat
Z [auth 4]IPR055063Small ribosomal subunit protein mS39, PPRRepeat
AA [auth 8]IPR016035Acyl transferase/acyl hydrolase/lysophospholipaseHomologous Superfamily
AA [auth 8]IPR052760Mitochondrial malonyltransferaseFamily
AA [auth 8]IPR001227Acyl transferase domain superfamilyHomologous Superfamily
AA [auth 8]IPR016036Malonyl-CoA ACP transacylase, ACP-bindingHomologous Superfamily
AA [auth 8]IPR014043Acyl transferase domainDomain
BA [auth 7]IPR015324Ribosomal protein Rsm22-likeFamily
BA [auth 7]IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
BA [auth 7]IPR052571Mitochondrial RNA MethyltransferaseFamily
CA [auth 5]IPR001737Ribosomal RNA adenine methyltransferase KsgA/ErmFamily
CA [auth 5]IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
CA [auth 5]IPR020598Ribosomal RNA adenine methylase transferase, N-terminalDomain
CA [auth 5]IPR023165rRNA adenine dimethylase-like, C-terminalHomologous Superfamily
CA [auth 5]IPR011530Ribosomal RNA adenine dimethylaseFamily
CA [auth 5]IPR020596Ribosomal RNA adenine methylase transferase, conserved siteConserved Site
DA [auth V]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
DA [auth V]IPR002885Pentatricopeptide repeatRepeat
DA [auth V]IPR019266Small ribosomal subunit protein mS27Family
DA [auth V]IPR034913mS27/PTCD2Family

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A [auth a]O75616
B [auth 0]P82930
C [auth 9]Q8NC60
P82675
P82932
F [auth J]O15235
G [auth L]P82914
H [auth M]Q9Y3D3
I [auth N]Q9Y2R5
J [auth O]Q9Y676
K [auth P]Q9Y3D5
M [auth R]P82650
N [auth S]Q9Y3D9
O [auth T]P82663
R [auth B]Q9Y399
S [auth W]Q9Y2Q9
U [auth F]Q9Y2R9
V [auth G]P82933
W [auth X]P51398
X [auth Y]Q92665
Y [auth 1]P82673
Z [auth 4]Q96EY7
AA [auth 8]Q8IVS2
BA [auth 7]Q9H7H0
CA [auth 5]Q8WVM0
DA [auth V]Q92552

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
L [auth Q]ACE AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354

:  N-acetyl-L-alanine MOD:00050 , N-acetyl-L-aspartic acid MOD:00051 , N-acetyl-L-cysteine MOD:00052 , N-acetyl-S-archeol-cysteine MOD:00897 , N-acetyl-L-glutamic acid MOD:00053 , N-acetyl-L-glutamine MOD:00054 , N-acetylglycine MOD:00055 , N-acetyl-L-methionine MOD:00058 , N-acetyl-L-proline MOD:00059 , N-acetyl-L-serine MOD:00060 , N,O-diacetylated L-serine MOD:00648 , N-acetyl-L-threonine MOD:00061 , N-acetyl-L-tyrosine MOD:00062 , N-acetyl-L-valine MOD:00063 , N2-acetyl-L-arginine MOD:00359