9H51 | pdb_00009h51

Assembly intermediate of human mitochondrial ribosome small subunit in complex with PUS1, METTL15 and RBFA(IN conformation) (state M1)


Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
C [auth B]28S ribosomal protein S2, mitochondrial
G [auth J]28S ribosomal protein S12, mitochondrial
O [auth S]28S ribosomal protein S23, mitochondrial
AA [auth Z]28S ribosomal protein S33, mitochondrial
GA [auth C]28S ribosomal protein S24, mitochondrial
I [auth M]28S ribosomal protein S16, mitochondrial
H [auth L]28S ribosomal protein S15, mitochondrial
F [auth I]28S ribosomal protein S11, mitochondrial
28S ribosomal protein S6, mitochondrial
28S ribosomal protein S5, mitochondrial
HA [auth 9]Nitric oxide-associated protein 1
FA [auth F]28S ribosomal protein S7, mitochondrial
EA [auth G]28S ribosomal protein S9, mitochondrial
DA [auth Y]28S ribosomal protein S31, mitochondrial
CA [auth K]28S ribosomal protein S14, mitochondrial
BA [auth X]28S ribosomal protein S29, mitochondrial
Z [auth 1]28S ribosomal protein S35, mitochondrial
Y [auth H]28S ribosomal protein S10, mitochondrial-
X [auth 4]Pentatricopeptide repeat domain-containing protein 3, mitochondrial
W [auth a]Putative ribosome-binding factor A, mitochondrial
V [auth b]12S rRNA N4-methylcytidine (m4C) methyltransferase
U [auth 3]Aurora kinase A-interacting protein-
T [auth 0]Small ribosomal subunit protein mS34
B [auth A]RNA (969-MER)---
S [auth W]28S ribosomal protein S28, mitochondrial
R [auth V]28S ribosomal protein S27, mitochondrial
Q [auth U]28S ribosomal protein S26, mitochondrial
P [auth T]28S ribosomal protein S25, mitochondrial
N [auth R]28S ribosomal protein S22, mitochondrial
M [auth Q]Small ribosomal subunit protein bS21m
L [auth P]28S ribosomal protein S18c, mitochondrial
K [auth O]28S ribosomal protein S18b, mitochondrial
J [auth N]28S ribosomal protein S17, mitochondrial
A [auth c]Pseudouridylate synthase 1 homolog

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
C [auth B]IPR005706Small ribosomal subunit protein uS2, bacteria/mitochondria/plastidFamily
C [auth B]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
C [auth B]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
C [auth B]IPR001865Small ribosomal subunit protein uS2Family
G [auth J]IPR006032Small ribosomal subunit protein uS12Family
G [auth J]IPR005679Ribosomal protein uS12, bacteriaFamily
G [auth J]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
O [auth S]IPR059242Small ribosomal subunit protein mS23, conserved domainDomain
O [auth S]IPR019520Small ribosomal subunit protein mS23, metazoaFamily
O [auth S]IPR023611Small ribosomal subunit protein mS23, conserved domain, metazoaDomain
AA [auth Z]IPR013219Small ribosomal subunit protein mS33Family
GA [auth C]IPR026146Small ribosomal subunit protein uS3m, metazoanFamily
I [auth M]IPR023803Small ribosomal subunit protein bS16 domain superfamilyHomologous Superfamily
I [auth M]IPR000307Small ribosomal subunit protein bS16Family
H [auth L]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
H [auth L]IPR000589Small ribosomal subunit protein uS15Family
H [auth L]IPR005290Small ribosomal subunit protein uS15, bacteriaFamily
H [auth L]IPR052137Universal small ribosomal subunit uS15Family
F [auth I]IPR001971Small ribosomal subunit protein uS11Family
F [auth I]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
F [auth I]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
IPR000529Small ribosomal subunit protein bS6Family
IPR035980Small ribosomal subunit protein bS6 superfamilyHomologous Superfamily
IPR014717Translation elongation factor EF1B/small ribosomal subunit protein bS6Homologous Superfamily
IPR000851Small ribosomal subunit protein uS5Family
IPR048584Small ribosomal subunit protein uS5m, N-terminal domainDomain
IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
HA [auth 9]IPR030378Circularly permuted (CP)-type guanine nucleotide-binding (G) domainDomain
HA [auth 9]IPR052807Mitochondrial translation and respiration regulatorFamily
HA [auth 9]IPR006073GTP binding domainDomain
HA [auth 9]IPR048422NOA1/YqeH-like, C-terminal domainDomain
HA [auth 9]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
FA [auth F]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
FA [auth F]IPR000235Small ribosomal subunit protein uS7Family
FA [auth F]IPR023798Small ribosomal subunit protein uS7 domainDomain
EA [auth G]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
EA [auth G]IPR023035Small ribosomal subunit protein uS9, bacteria/plastidFamily
EA [auth G]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
EA [auth G]IPR000754Small ribosomal subunit protein uS9Family
EA [auth G]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
DA [auth Y]IPR026299Mitochondrial 28S ribosomal protein S31Family
CA [auth K]IPR001209Small ribosomal subunit protein uS14Family
BA [auth X]IPR019368Small ribosomal subunit protein mS29Family
BA [auth X]IPR008092Small ribosomal subunit protein mS29, metazoaFamily
BA [auth X]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
Z [auth 1]IPR039848Small ribosomal subunit protein mS35, mitochondrialFamily
Z [auth 1]IPR019349Small ribosomal subunit protein mS35, mitochondrial, conserved domainDomain
Y [auth H]IPR027486Small ribosomal subunit protein uS10 domainDomain
Y [auth H]IPR040055Small ribosomal subunit protein uS10mFamily
Y [auth H]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
X [auth 4]IPR037387Pentatricopeptide repeat domain-containing protein 3Family
X [auth 4]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
X [auth 4]IPR002885Pentatricopeptide repeatRepeat
X [auth 4]IPR055063Small ribosomal subunit protein mS39, PPRRepeat
W [auth a]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
W [auth a]IPR039212Ribosome-binding factor A, mitochondrialFamily
W [auth a]IPR020053Ribosome-binding factor A, conserved siteConserved Site
W [auth a]IPR023799Ribosome-binding factor A domain superfamilyHomologous Superfamily
W [auth a]IPR000238Ribosome-binding factor AFamily
V [auth b]IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyHomologous Superfamily
V [auth b]IPR002903Ribosomal RNA small subunit methyltransferase HFamily
V [auth b]IPR023397S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamilyHomologous Superfamily
U [auth 3]IPR013177Ribosomal protein bS22, C-terminalDomain
T [auth 0]IPR032053Small ribosomal subunit protein mS34Family
S [auth W]IPR019375Small ribosomal subunit protein bS1mFamily
R [auth V]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
R [auth V]IPR002885Pentatricopeptide repeatRepeat
R [auth V]IPR019266Small ribosomal subunit protein mS27Family
R [auth V]IPR034913mS27/PTCD2Family
Q [auth U]IPR026140Small ribosomal subunit protein mS26Family
P [auth T]IPR007741Ribosomal protein/NADH dehydrogenase domainDomain
P [auth T]IPR036249Thioredoxin-like superfamilyHomologous Superfamily
P [auth T]IPR040049Ribosomal subunit protein mS25/mL61, mitochondrialFamily
N [auth R]IPR019374Small ribosomal subunit protein mS22Family
M [auth Q]IPR038380Small ribosomal subunit protein bS21 superfamilyHomologous Superfamily
M [auth Q]IPR001911Small ribosomal subunit protein bS21Family
L [auth P]IPR001648Small ribosomal subunit protein bS18Family
L [auth P]IPR018275Small ribosomal subunit protein bS18, conserved siteConserved Site
L [auth P]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
K [auth O]IPR040054Small ribosomal subunit protein mS40Family
K [auth O]IPR001648Small ribosomal subunit protein bS18Family
K [auth O]IPR036870Small ribosomal subunit protein bS18 superfamilyHomologous Superfamily
J [auth N]IPR039193Small ribosomal subunit protein uS17m, metazoaFamily
J [auth N]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
J [auth N]IPR000266Small ribosomal subunit protein uS17Family
A [auth c]IPR020103Pseudouridine synthase, catalytic domain superfamilyHomologous Superfamily
A [auth c]IPR041708Pseudouridine synthase PUS1/ PUS2-likeFamily
A [auth c]IPR001406Pseudouridine synthase I, TruAFamily
A [auth c]IPR020095Pseudouridine synthase I, TruA, C-terminalHomologous Superfamily
A [auth c]IPR020094Pseudouridine synthase TruA/RsuA/RluB/E/F, N-terminalHomologous Superfamily
A [auth c]IPR020097Pseudouridine synthase I, TruA, alpha/beta domainDomain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
C [auth B]Q9Y399
G [auth J]O15235
O [auth S]Q9Y3D9
AA [auth Z]Q9Y291
I [auth M]Q9Y3D3
H [auth L]P82914
F [auth I]P82912
P82932
P82675
HA [auth 9]Q8NC60
FA [auth F]Q9Y2R9
EA [auth G]P82933
DA [auth Y]Q92665
CA [auth K]O60783
BA [auth X]P51398
Z [auth 1]P82673
Y [auth H]P82664
X [auth 4]Q96EY7
W [auth a]Q8N0V3
V [auth b]A6NJ78
U [auth 3]Q9NWT8
T [auth 0]P82930
S [auth W]Q9Y2Q9
R [auth V]Q92552
P [auth T]P82663
N [auth R]P82650
M [auth Q]P82921
L [auth P]Q9Y3D5
K [auth O]Q9Y676
J [auth N]Q9Y2R5
A [auth c]Q9Y606

Protein Modification Annotation

Modified Residue(s)
ChainResidue(s)Description
F [auth I]5F0
B [auth A]5MU Parent Component: U

B [auth A]MA6 Parent Component: A

M [auth Q]ACE AA0041 , AA0042 , AA0043 , AA0044 , AA0045 , AA0046 , AA0049 , AA0050 , AA0051 , AA0052 , AA0053 , AA0054 , AA0354

:  N-acetyl-L-alanine MOD:00050 , N-acetyl-L-aspartic acid MOD:00051 , N-acetyl-L-cysteine MOD:00052 , N-acetyl-S-archeol-cysteine MOD:00897 , N-acetyl-L-glutamic acid MOD:00053 , N-acetyl-L-glutamine MOD:00054 , N-acetylglycine MOD:00055 , N-acetyl-L-methionine MOD:00058 , N-acetyl-L-proline MOD:00059 , N-acetyl-L-serine MOD:00060 , N,O-diacetylated L-serine MOD:00648 , N-acetyl-L-threonine MOD:00061 , N-acetyl-L-tyrosine MOD:00062 , N-acetyl-L-valine MOD:00063 , N2-acetyl-L-arginine MOD:00359