9GTS | pdb_00009gts

Cryo-EM structure of a contractile injection system in Streptomyces coelicolor, the cap portion in extended state.

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Q [auth 2B]	Beta-Casp	e9gts2B1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
O [auth 2C]	Beta-Casp	e9gts2C1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
M [auth 2D]	Beta-Casp	e9gts2D1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
K [auth 2E]	Beta-Casp	e9gts2E1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
I [auth 2F]	Beta-Casp	e9gts2F1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
G [auth 2A]	Beta-Casp	e9gts2A1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
F [auth 1b]	Beta-Casp	e9gts1b1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
E [auth 1c]	Beta-Casp	e9gts1c1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
D [auth 1d]	Beta-Casp	e9gts1d1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
C [auth 1e]	Beta-Casp	e9gts1e1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
B [auth 1f]	Beta-Casp	e9gts1f1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
A [auth 1a]	Beta-Casp	e9gts1a1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
H [auth 0A], J [auth 0F], L [auth 0E], N [auth 0D], P [auth 0C], H [auth 0A], J [auth 0F], L [auth 0E], N [auth 0D], P [auth 0C], R [auth 0B]	PF14065	Pvc16 N-terminal domain (Pvc16_N)	Pvc16 N-terminal domain	This protein forms part of a contractile injection system [1]. Photorhabdus virulence cassette (PVC) represents one group of extracellular CISs that are present in both bacteria and archaea [1]. This entry include Pvc16. This family of proteins is f ...	This protein forms part of a contractile injection system [1]. Photorhabdus virulence cassette (PVC) represents one group of extracellular CISs that are present in both bacteria and archaea [1]. This entry include Pvc16. This family of proteins is found in bacteria and archaea. Proteins in this family are typically between 190 and 320 amino acids in length. This domain alone in Pvc16 is able to produce PVC particles with normal length but without the outer sheath, indicating the main function of this N-terminal domain in terminating the tube growth [1].	Domain
G [auth 2A], I [auth 2F], K [auth 2E], M [auth 2D], O [auth 2C], G [auth 2A], I [auth 2F], K [auth 2E], M [auth 2D], O [auth 2C], Q [auth 2B]	PF17482	Phage tail sheath C-terminal domain (Phage_sheath_1C)	Phage tail sheath C-terminal domain	This entry represents the C-terminal domain in a variety of phage tail sheath proteins [4].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
H [auth 0A], J [auth 0F], L [auth 0E], N [auth 0D], P [auth 0C], H [auth 0A], J [auth 0F], L [auth 0E], N [auth 0D], P [auth 0C], R [auth 0B]	Pvc16 N-terminal domain-containing protein	-	-	-
G [auth 2A], I [auth 2F], K [auth 2E], M [auth 2D], O [auth 2C], G [auth 2A], I [auth 2F], K [auth 2E], M [auth 2D], O [auth 2C], Q [auth 2B]	Phage tail sheath family protein	-	-	-
A [auth 1a], B [auth 1f], C [auth 1e], D [auth 1d], E [auth 1c], A [auth 1a], B [auth 1f], C [auth 1e], D [auth 1d], E [auth 1c], F [auth 1b]	Phage tail protein	structural molecule activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
H [auth 0A], J [auth 0F], L [auth 0E], N [auth 0D], P [auth 0C], H [auth 0A], J [auth 0F], L [auth 0E], N [auth 0D], P [auth 0C], R [auth 0B]	IPR025351	Pvc16, N-terminal	Domain
G [auth 2A], I [auth 2F], K [auth 2E], M [auth 2D], O [auth 2C], G [auth 2A], I [auth 2F], K [auth 2E], M [auth 2D], O [auth 2C], Q [auth 2B]	IPR052042	Tail sheath structural protein	Family
G [auth 2A], I [auth 2F], K [auth 2E], M [auth 2D], O [auth 2C], G [auth 2A], I [auth 2F], K [auth 2E], M [auth 2D], O [auth 2C], Q [auth 2B]	IPR020287	Tail sheath protein, C-terminal domain	Domain
G [auth 2A], I [auth 2F], K [auth 2E], M [auth 2D], O [auth 2C], G [auth 2A], I [auth 2F], K [auth 2E], M [auth 2D], O [auth 2C], Q [auth 2B]	IPR035089	Tail sheath protein, subtilisin-like domain	Domain
G [auth 2A], I [auth 2F], K [auth 2E], M [auth 2D], O [auth 2C], G [auth 2A], I [auth 2F], K [auth 2E], M [auth 2D], O [auth 2C], Q [auth 2B]	IPR035326	Phage tail sheath protein-like, beta-sandwich domain	Domain
A [auth 1a], B [auth 1f], C [auth 1e], D [auth 1d], E [auth 1c], A [auth 1a], B [auth 1f], C [auth 1e], D [auth 1d], E [auth 1c], F [auth 1b]	IPR011747	Conserved hypothetical protein CHP02241	Family
A [auth 1a], B [auth 1f], C [auth 1e], D [auth 1d], E [auth 1c], A [auth 1a], B [auth 1f], C [auth 1e], D [auth 1d], E [auth 1c], F [auth 1b]	IPR010667	Bacteriophage T4, Gp19, tail tube	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.