9GFI | pdb_00009gfi

hRAR alpha LBD-AM580 complex with staple peptide

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e9gfiA01	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F:	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00104	Ligand-binding domain of nuclear hormone receptor (Hormone_recep)	Ligand-binding domain of nuclear hormone receptor	This all helical domain is involved in binding the hormone in these receptors.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	Stapled peptide-like ligand	-	-	-
A	Retinoic acid receptor alpha	protein binding binding protein kinase B binding kinase binding enzyme binding protein kinase binding histone deacetylase binding transcription regulator activity DNA-binding transcription repressor activity DNA-binding transcription factor activity DNA-binding transcription factor activity, RNA polymerase II-specific nuclear receptor activity molecular transducer activity signaling receptor activity protein binding binding protein kinase B binding kinase binding enzyme binding protein kinase binding histone deacetylase binding transcription regulator activity DNA-binding transcription repressor activity DNA-binding transcription factor activity DNA-binding transcription factor activity, RNA polymerase II-specific nuclear receptor activity molecular transducer activity signaling receptor activity ligand-modulated transcription factor activity protein kinase A binding retinoic acid binding organic acid binding isoprenoid binding retinoid binding ion binding anion binding lipid binding carboxylic acid binding monocarboxylic acid binding small molecule binding DNA binding sequence-specific DNA binding sequence-specific double-stranded DNA binding double-stranded DNA binding nucleic acid binding protein domain specific binding signaling receptor binding retinoic acid-responsive element binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding transcription cis-regulatory region binding transcription regulatory region nucleic acid binding RNA polymerase II cis-regulatory region sequence-specific DNA binding cytoskeletal protein binding alpha-actinin binding actinin binding chromatin binding translation regulator activity mRNA regulatory element binding translation repressor activity translation repressor activity heterocyclic compound binding transcription factor binding transcription coregulator binding transcription coactivator binding chromatin DNA binding RNA binding mRNA 5'-UTR binding mRNA binding cation binding transition metal ion binding zinc ion binding metal ion binding	multicellular organismal process regulation of cellular process positive regulation of biological process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process regulation of interleukin-5 production positive regulation of biosynthetic process regulation of cytokine production cytokine production regulation of multicellular organismal process positive regulation of macromolecule metabolic process interleukin-5 production positive regulation of cellular process regulation of biosynthetic process multicellular organismal process regulation of cellular process positive regulation of biological process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process regulation of interleukin-5 production positive regulation of biosynthetic process regulation of cytokine production cytokine production regulation of multicellular organismal process positive regulation of macromolecule metabolic process interleukin-5 production positive regulation of cellular process regulation of biosynthetic process regulation of biological process biological regulation regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process regulation of gene expression biosynthetic process positive regulation of gene expression positive regulation of multicellular organismal process regulation of macromolecule biosynthetic process metabolic process cellular process macromolecule metabolic process positive regulation of cytokine production regulation of metabolic process positive regulation of interleukin-5 production regulation of tumor necrosis factor production negative regulation of biological process negative regulation of tumor necrosis factor production negative regulation of cellular process negative regulation of macromolecule metabolic process negative regulation of metabolic process tumor necrosis factor superfamily cytokine production negative regulation of cytokine production tumor necrosis factor production negative regulation of gene expression regulation of tumor necrosis factor superfamily cytokine production negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of tumor necrosis factor superfamily cytokine production negative regulation of multicellular organismal process developmental process reproductive system development prostate gland development reproductive process gland development animal organ development urogenital system development developmental process involved in reproduction multicellular organism development anatomical structure development reproductive structure development animal gross anatomical part developmental process system development interleukin-13 production positive regulation of interleukin-13 production regulation of interleukin-13 production regulation of apoptotic process apoptotic process regulation of programmed cell death cell death programmed cell death response to nutrient levels response to stimulus response to lipid response to chemical response to nutrient response to vitamin A response to vitamin cellular response to stimulus response to oxygen-containing compound cellular response to oxygen-containing compound response to retinoic acid cellular response to chemical stimulus cellular response to retinoic acid cellular response to lipid intracellular receptor signaling pathway signaling response to endogenous stimulus retinoic acid receptor signaling pathway hormone-mediated signaling pathway intracellular signal transduction cell communication cellular response to endogenous stimulus response to hormone signal transduction nuclear receptor-mediated signaling pathway cellular response to hormone stimulus regulation of alpha-beta T cell activation regulation of leukocyte activation regulation of cell activation positive regulation of T cell differentiation regulation of cell development type 2 immune response positive regulation of immune response T cell activation cell differentiation regulation of type 2 immune response regulation of T-helper cell differentiation alpha-beta T cell activation regulation of immune system process positive regulation of CD4-positive, alpha-beta T cell differentiation immune response T-helper cell differentiation positive regulation of cell development immune effector process regulation of response to stimulus regulation of leukocyte cell-cell adhesion positive regulation of alpha-beta T cell differentiation regulation of developmental process cell development positive regulation of leukocyte cell-cell adhesion CD4-positive, alpha-beta T cell differentiation positive regulation of T-helper cell differentiation positive regulation of cell-cell adhesion regulation of T cell differentiation positive regulation of lymphocyte activation alpha-beta T cell differentiation T cell activation involved in immune response positive regulation of cell differentiation leukocyte activation involved in immune response positive regulation of immune effector process regulation of T-helper 2 cell differentiation regulation of cell-cell adhesion hemopoiesis regulation of cell adhesion cell activation positive regulation of T-helper 2 cell differentiation regulation of CD4-positive, alpha-beta T cell activation immune system process regulation of lymphocyte activation regulation of immune effector process regulation of leukocyte differentiation mononuclear cell differentiation regulation of cell differentiation lymphocyte differentiation cell activation involved in immune response positive regulation of developmental process positive regulation of cell activation positive regulation of leukocyte activation T cell differentiation positive regulation of immune system process positive regulation of T cell activation positive regulation of alpha-beta T cell activation regulation of immune response leukocyte differentiation cellular developmental process regulation of CD4-positive, alpha-beta T cell differentiation regulation of alpha-beta T cell differentiation lymphocyte activation leukocyte cell-cell adhesion leukocyte activation positive regulation of response to stimulus positive regulation of CD4-positive, alpha-beta T cell activation cell adhesion cell-cell adhesion alpha-beta T cell activation involved in immune response positive regulation of hemopoiesis CD4-positive, alpha-beta T cell activation T-helper 2 cell differentiation lymphocyte activation involved in immune response regulation of lymphocyte differentiation regulation of multicellular organismal development positive regulation of cell adhesion regulation of T cell activation T cell differentiation involved in immune response positive regulation of type 2 immune response regulation of hemopoiesis positive regulation of leukocyte differentiation positive regulation of lymphocyte differentiation protein phosphorylation phosphorylation macromolecule modification phosphate-containing compound metabolic process primary metabolic process protein metabolic process protein modification process mRNA transcription by RNA polymerase II RNA metabolic process nucleobase-containing compound biosynthetic process mRNA transcription mRNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process DNA-templated transcription nucleic acid biosynthetic process transcription by RNA polymerase II regulation of type II interferon production type II interferon production negative regulation of type II interferon production response to estrogen cellular response to estrogen stimulus regulation of primary metabolic process negative regulation of RNA biosynthetic process regulation of RNA metabolic process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II regulation of DNA-templated transcription negative regulation of RNA metabolic process positive regulation of DNA-templated transcription positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process import into cell localization transport phagocytosis apoptotic cell clearance endocytosis establishment of localization hepaticobiliary system development liver development cell cycle regulation of cell cycle positive regulation of cell cycle head development forebrain development brain development nervous system development pallium development central nervous system development telencephalon development hippocampus development limbic system development regulation of myelination regulation of nervous system development myelination axon ensheathment ensheathment of neurons multi-multicellular organism process female pregnancy multi-organism reproductive process sexual reproduction multicellular organismal reproductive process cellular process involved in reproduction in multicellular organism gamete generation germ cell development myeloid leukocyte differentiation regulation of granulocyte differentiation negative regulation of cell differentiation negative regulation of hemopoiesis negative regulation of leukocyte differentiation negative regulation of developmental process regulation of myeloid cell differentiation negative regulation of myeloid cell differentiation regulation of myeloid leukocyte differentiation negative regulation of myeloid leukocyte differentiation negative regulation of cell development negative regulation of granulocyte differentiation granulocyte differentiation myeloid cell differentiation negative regulation of immune system process biological process involved in interspecies interaction between organisms response to other organism cellular response to lipopolysaccharide response to external stimulus cellular response to molecule of bacterial origin response to lipopolysaccharide response to biotic stimulus cellular response to biotic stimulus response to bacterium response to external biotic stimulus response to molecule of bacterial origin response to peptide response to cytokine response to alcohol response to ethanol cell population proliferation positive regulation of cell population proliferation regulation of cell population proliferation negative regulation of miRNA transcription miRNA transcription regulation of miRNA metabolic process miRNA metabolic process negative regulation of miRNA metabolic process regulation of miRNA transcription positive regulation of neuron differentiation neurogenesis neuron differentiation generation of neurons regulation of neuron differentiation negative regulation of cell population proliferation regulation of synaptic plasticity trans-synaptic signaling regulation of signaling modulation of chemical synaptic transmission cell-cell signaling chemical synaptic transmission synaptic signaling regulation of trans-synaptic signaling anterograde trans-synaptic signaling regulation of cell communication regulation of biological quality sex differentiation epithelial cell fate commitment epithelial cell differentiation Sertoli cell differentiation male gonad development male sex differentiation development of primary male sexual characteristics development of primary sexual characteristics epithelium development gonad development tissue development Sertoli cell fate commitment cell fate commitment regulation of interleukin-4 production positive regulation of interleukin-4 production interleukin-4 production response to estradiol positive regulation of molecular function regulation of molecular function regulation of binding positive regulation of binding	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex transcription regulator complex somatodendritic compartment cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection intracellular organelle organelle cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex transcription regulator complex somatodendritic compartment cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection intracellular organelle organelle membraneless organelle intracellular membraneless organelle chromatin chromosome perinuclear region of cytoplasm membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle nucleolus intracellular organelle lumen organelle lumen nuclear lumen RNA polymerase II transcription regulator complex nuclear protein-containing complex cell periphery plasma membrane membrane nucleoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR001628	Zinc finger, nuclear hormone receptor-type	Domain
A	IPR047158	Retinoic acid receptor, ligand-binding domain	Domain
A	IPR013088	Zinc finger, NHR/GATA-type	Homologous Superfamily
A	IPR003078	Retinoic acid receptor	Family
A	IPR001723	Nuclear hormone receptor	Family
A	IPR047159	Retinoic acid receptor, DNA-binding domain	Domain
A	IPR000536	Nuclear hormone receptor, ligand-binding domain	Domain
A	IPR035500	Nuclear hormone receptor-like domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A	: P10276	acute promyelocytic leukemia breast fibroadenoma Neoplasms, Second Primary cancer sciatic neuropathy benign breast phyllodes tumor breast carcinoma lesion of sciatic nerve psoriasis malignant ependymoma atypical teratoid rhabdoid tumor breast cancer osteosarcoma pituitary cancer schizophrenia acute promyelocytic leukemia breast fibroadenoma Neoplasms, Second Primary cancer sciatic neuropathy benign breast phyllodes tumor breast carcinoma lesion of sciatic nerve psoriasis malignant ependymoma atypical teratoid rhabdoid tumor breast cancer osteosarcoma pituitary cancer schizophrenia gastric cancer hematologic disease Sjogren syndrome tuberculosis malignant breast phyllodes tumor malignant glioma acute myeloid leukemia phyllodes tumor primitive neuroectodermal tumor gastric carcinoma hepatocellular carcinoma type 2 diabetes mellitus medulloblastoma myeloid leukemia pilocytic astrocytoma glioblastoma