9GBV
E.coli gyrase holocomplex with chirally wrapped 217 bp DNA fragment
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A | SCOP2B Superfamily | Type II DNA topoisomerase half-clamp domain-like | 8037555 | 3001800 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | GyrA/ParC C-terminal domain-like | 8065316 | 3002017 | SCOP2B (2022-06-29) |
A | SCOP2B Superfamily | Winged helix DNA-binding domain | 8055745 | 3000034 | SCOP2B (2022-06-29) |
B [auth C] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8055745 | 3000034 | SCOP2B (2022-06-29) |
B [auth C] | SCOP2B Superfamily | GyrA/ParC C-terminal domain-like | 8065316 | 3002017 | SCOP2B (2022-06-29) |
B [auth C] | SCOP2B Superfamily | Type II DNA topoisomerase half-clamp domain-like | 8037555 | 3001800 | SCOP2B (2022-06-29) |
C [auth B] | SCOP2B Superfamily | GHKL (Gyrase, Hsp90, Histidine Kinase, MutL) domain-like | 8036204 | 3000091 | SCOP2B (2022-06-29) |
C [auth B] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8034440 | 3000100 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | GHKL (Gyrase, Hsp90, Histidine Kinase, MutL) domain-like | 8036204 | 3000091 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8034440 | 3000100 | SCOP2B (2022-06-29) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, B [auth C] | PF03989 | DNA gyrase C-terminal domain, beta-propeller (DNA_gyraseA_C) | DNA gyrase C-terminal domain, beta-propeller | - | Repeat |
A, B [auth C] | PF00521 | DNA gyrase/topoisomerase IV, subunit A (DNA_topoisoIV) | DNA gyrase/topoisomerase IV, subunit A | - | Family |
C [auth B], D | PF00204 | DNA gyrase B (DNA_gyraseB) | DNA gyrase B | This family represents the second domain of DNA gyrase B which has a ribosomal S5 domain 2-like fold. This family is structurally related to PF01119. | Domain |
C [auth B], D | PF00986 | DNA gyrase B subunit, carboxyl terminus (DNA_gyraseB_C) | DNA gyrase B subunit, carboxyl terminus | - | Family |
C [auth B], D | PF18053 | DNA gyrase B subunit insert domain (GyrB_insert) | DNA gyrase B subunit insert domain | This is the insert domain found in DNA gyrase B subunit proteins. Studies indicate that the insert has two functions, acting as a steric buttress to pre-configure the primary DNA-binding site, and serving as a relay that may help coordinate communica ... | Domain |
C [auth B], D | PF02518 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c) | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90. | Domain |
C [auth B], D | PF01751 | Toprim domain (Toprim) | Toprim domain | - | Family |
C [auth B], D | PF21249 | GyrB, hook (GyrB_hook) | GyrB, hook | This entry represents the N-terminal section of the 'Toprim hook' as described in [1], which is localised between the Toprim (Pfam:PF01751) and the insert (Pfam:PF18053) domains [1-3]. The C-terminal section of the hook is included in (Pfam:PF00986). ... | Domain |