9FNA | pdb_00009fna

CryoEM structure of Encapsulin::tdNfsB with an open pore state

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
ZA [auth VA]	Beta-Casp	e9fnaVA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
Z [auth IA]	Beta-Casp	e9fnaIA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
YA [auth V]	Beta-Casp	e9fnaV1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
Y [auth I]	Beta-Casp	e9fnaI1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
XA [auth UA]	Beta-Casp	e9fnaUA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
X [auth HB]	Beta-Casp	e9fnaHB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
WA [auth TA]	Beta-Casp	e9fnaTA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
W [auth HA]	Beta-Casp	e9fnaHA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
VA [auth T]	Beta-Casp	e9fnaT1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
V [auth H]	Beta-Casp	e9fnaH1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
UA [auth SA]	Beta-Casp	e9fnaSA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
U [auth GB]	Beta-Casp	e9fnaGB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
TA [auth S]	Beta-Casp	e9fnaS1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
T [auth GA]	Beta-Casp	e9fnaGA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
SA [auth RA]	Beta-Casp	e9fnaRA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
S [auth G]	Beta-Casp	e9fnaG1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
RA [auth R]	Beta-Casp	e9fnaR1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
R [auth FB]	Beta-Casp	e9fnaFB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
QA	Beta-Casp	e9fnaQA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
Q [auth FA]	Beta-Casp	e9fnaFA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
PA [auth Q]	Beta-Casp	e9fnaQ1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
P [auth F]	Beta-Casp	e9fnaF1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
OA [auth PA]	Beta-Casp	e9fnaPA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
O [auth EB]	Beta-Casp	e9fnaEB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
NA [auth P]	Beta-Casp	e9fnaP1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
N [auth EA]	Beta-Casp	e9fnaEA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
MA [auth OA]	Beta-Casp	e9fnaOA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
M [auth E]	Beta-Casp	e9fnaE1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
LA [auth O]	Beta-Casp	e9fnaO1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
L [auth DB]	Beta-Casp	e9fnaDB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
KA [auth NA]	Beta-Casp	e9fnaNA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
K [auth DA]	Beta-Casp	e9fnaDA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
JA [auth N]	Beta-Casp	e9fnaN1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
J [auth D]	Beta-Casp	e9fnaD1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
IA [auth MA]	Beta-Casp	e9fnaMA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
I [auth CB]	Beta-Casp	e9fnaCB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
HB [auth ZA]	Beta-Casp	e9fnaZA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
HA [auth M]	Beta-Casp	e9fnaM1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
H [auth CA]	Beta-Casp	e9fnaCA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
GB [auth Z]	Beta-Casp	e9fnaZ1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
GA [auth LA]	Beta-Casp	e9fnaLA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
G [auth C]	Beta-Casp	e9fnaC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
FB [auth YA]	Beta-Casp	e9fnaYA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
FA [auth L]	Beta-Casp	e9fnaL1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
F [auth BB]	Beta-Casp	e9fnaBB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
EB [auth Y]	Beta-Casp	e9fnaY1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
EA [auth KA]	Beta-Casp	e9fnaKA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
E [auth BA]	Beta-Casp	e9fnaBA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
DB [auth XA]	Beta-Casp	e9fnaXA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
DA [auth K]	Beta-Casp	e9fnaK1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
D [auth B]	Beta-Casp	e9fnaB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
CB [auth X]	Beta-Casp	e9fnaX1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
CA [auth JA]	Beta-Casp	e9fnaJA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
C [auth AB]	Beta-Casp	e9fnaAB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
BB [auth WA]	Beta-Casp	e9fnaWA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
BA [auth J]	Beta-Casp	e9fnaJ1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
B [auth AA]	Beta-Casp	e9fnaAA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
AB [auth W]	Beta-Casp	e9fnaW1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
AA [auth IB]	Beta-Casp	e9fnaIB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)
A	Beta-Casp	e9fnaA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: Beta-Casp	ECOD (v294.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth IB], AB [auth W], B [auth AA], BA [auth J], A, AA [auth IB], AB [auth W], B [auth AA], BA [auth J], BB [auth WA], C [auth AB], CA [auth JA], CB [auth X], D [auth B], DA [auth K], DB [auth XA], E [auth BA], EA [auth KA], EB [auth Y], F [auth BB], FA [auth L], FB [auth YA], G [auth C], GA [auth LA], GB [auth Z], H [auth CA], HA [auth M], HB [auth ZA], I [auth CB], IA [auth MA], J [auth D], JA [auth N], K [auth DA], KA [auth NA], L [auth DB], LA [auth O], M [auth E], MA [auth OA], N [auth EA], NA [auth P], O [auth EB], OA [auth PA], P [auth F], PA [auth Q], Q [auth FA], QA, R [auth FB], RA [auth R], S [auth G], SA [auth RA], T [auth GA], TA [auth S], U [auth GB], UA [auth SA], V [auth H], VA [auth T], W [auth HA], WA [auth TA], X [auth HB], XA [auth UA], Y [auth I], YA [auth V], Z [auth IA], ZA [auth VA]	29 kDa antigen Cfp29	-	-	cell periphery cellular anatomical structure plasma membrane membrane extracellular region intracellular organelle intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle encapsulin nanocompartment

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth IB], AB [auth W], B [auth AA], BA [auth J], A, AA [auth IB], AB [auth W], B [auth AA], BA [auth J], BB [auth WA], C [auth AB], CA [auth JA], CB [auth X], D [auth B], DA [auth K], DB [auth XA], E [auth BA], EA [auth KA], EB [auth Y], F [auth BB], FA [auth L], FB [auth YA], G [auth C], GA [auth LA], GB [auth Z], H [auth CA], HA [auth M], HB [auth ZA], I [auth CB], IA [auth MA], J [auth D], JA [auth N], K [auth DA], KA [auth NA], L [auth DB], LA [auth O], M [auth E], MA [auth OA], N [auth EA], NA [auth P], O [auth EB], OA [auth PA], P [auth F], PA [auth Q], Q [auth FA], QA, R [auth FB], RA [auth R], S [auth G], SA [auth RA], T [auth GA], TA [auth S], U [auth GB], UA [auth SA], V [auth H], VA [auth T], W [auth HA], WA [auth TA], X [auth HB], XA [auth UA], Y [auth I], YA [auth V], Z [auth IA], ZA [auth VA]	IPR007544	Type 1 encapsulin shell protein	Family
A, AA [auth IB], AB [auth W], B [auth AA], BA [auth J], A, AA [auth IB], AB [auth W], B [auth AA], BA [auth J], BB [auth WA], C [auth AB], CA [auth JA], CB [auth X], D [auth B], DA [auth K], DB [auth XA], E [auth BA], EA [auth KA], EB [auth Y], F [auth BB], FA [auth L], FB [auth YA], G [auth C], GA [auth LA], GB [auth Z], H [auth CA], HA [auth M], HB [auth ZA], I [auth CB], IA [auth MA], J [auth D], JA [auth N], K [auth DA], KA [auth NA], L [auth DB], LA [auth O], M [auth E], MA [auth OA], N [auth EA], NA [auth P], O [auth EB], OA [auth PA], P [auth F], PA [auth Q], Q [auth FA], QA, R [auth FB], RA [auth R], S [auth G], SA [auth RA], T [auth GA], TA [auth S], U [auth GB], UA [auth SA], V [auth H], VA [auth T], W [auth HA], WA [auth TA], X [auth HB], XA [auth UA], Y [auth I], YA [auth V], Z [auth IA], ZA [auth VA]	IPR051429	Encapsulin nanocompartment	Family

RCSB PDB is hosted by

RCSB PDB is a member of

RCSB Partners
Nucleic Acid Knowledgebase

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.