9F1D
Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
P [auth BB] | SCOP2B Superfamily | Translational proteins | 8078357 | 3000811 | SCOP2B (2022-06-29) |
S [auth Av] | SCOP2B Superfamily | Ribosomal protein S8 | 8079081 | 3000709 | SCOP2B (2022-06-29) |
GA [auth Ay] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8090991 | 3000034 | SCOP2B (2022-06-29) |
KA [auth Aa] | SCOP2B Superfamily | Ribosomal S3Ae-like | 8053216 | 3002166 | SCOP2B (2022-06-29) |
NA [auth EA] | SCOP2B Superfamily | Creatinase/aminopeptidase catalytic domain-like | 8098746 | 3000126 | SCOP2B (2022-06-29) |
WA [auth Ad] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8052746 | 3000135 | SCOP2B (2022-06-29) |
WA [auth Ad] | SCOP2B Superfamily | Alpha-L RNA-binding motif | 8052745 | 3001473 | SCOP2B (2022-06-29) |
WA [auth Ad] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8052747 | 3000334 | SCOP2B (2022-06-29) |
BB [auth Bf] | SCOP2B Superfamily | Translational proteins | 8093714 | 3000811 | SCOP2B (2022-06-29) |
FB [auth Bg] | SCOP2B Superfamily | Ribosomal protein L34e-like | 8103328 | 3002203 | SCOP2B (2022-06-29) |
MB [auth Ah] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8053075 | 3000433 | SCOP2B (2022-06-29) |
NB [auth Bi] | SCOP2B Superfamily | Ribosomal protein L36e | 8053119 | 3002161 | SCOP2B (2022-06-29) |
UB [auth Bk] | SCOP2B Superfamily | Ribosomal L38e protein-like | 8093716 | 3002206 | SCOP2B (2022-06-29) |
WB [auth Ak] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8052707 | 3000135 | SCOP2B (2022-06-29) |
WB [auth Ak] | SCOP2B Superfamily | Ribosomal S17 N-terminal domain-like | 8052708 | 3002138 | SCOP2B (2022-06-29) |
XB [auth Bl] | SCOP2B Superfamily | Ribosomal protein L39e | 8095597 | 3001756 | SCOP2B (2022-06-29) |
KC [auth AG] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8052584 | 3000068 | SCOP2B (2022-06-29) |
LC [auth Ap] | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8082683 | 3000100 | SCOP2B (2022-06-29) |
K [auth BU] | SCOP2B Superfamily | 60S Ribosomal protein L22e | 8061156 | 3002158 | SCOP2B (2022-06-29) |
L [auth As] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8089322 | 3000034 | SCOP2B (2022-06-29) |
N [auth BV] | SCOP2B Superfamily | 50S Ribosomal protein L14-like | 8072048 | 3000433 | SCOP2B (2022-06-29) |
O [auth At] | SCOP2B Superfamily | Ribosomal protein S10 | 8097814 | 3001336 | SCOP2B (2022-06-29) |
R [auth BY] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8076754 | 3000334 | SCOP2B (2022-06-29) |
U [auth BX] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8095966 | 3000210 | SCOP2B (2022-06-29) |
W [auth BZ] | SCOP2B Superfamily | Translation proteins SH3-like KOW motif containing domain | 8053047 | 3000334 | SCOP2B (2022-06-29) |
AA [auth Au] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8053140 | 3000068 | SCOP2B (2022-06-29) |
BA [auth Ba] | SCOP2B Superfamily | Ribosomal proteins L15p and L18e | 8097818 | 3001045 | SCOP2B (2022-06-29) |
FA [auth AZ] | SCOP2B Superfamily | SIS domain/Ribosomal protein S2-like | 8097826 | 3001397 | SCOP2B (2022-06-29) |
IA [auth BC] | SCOP2B Superfamily | 60S ribosomal protein L4 C-terminal domain-like | 8052828 | 3002143 | SCOP2B (2022-06-29) |
IA [auth BC] | SCOP2B Superfamily | Ribosomal protein L4 | 8052829 | 3001146 | SCOP2B (2022-06-29) |
PA [auth Bc] | SCOP2B Superfamily | L30e-like | 8094953 | 3001739 | SCOP2B (2022-06-29) |
QA [auth BI] | SCOP2B Superfamily | Ribosomal protein L16p/L10e | 8097320 | 3000884 | SCOP2B (2022-06-29) |
UA [auth BJ] | SCOP2B Superfamily | RL5-like | 8073894 | 3001709 | SCOP2B (2022-06-29) |
ZA [auth DA] | SCOP2B Superfamily | Acyl-CoA N-acyltransferases (Nat) | 8087499 | 3000403 | SCOP2B (2022-06-29) |
AB [auth Ae] | SCOP2B Superfamily | Ribosomal protein S7 | 8066001 | 3000799 | SCOP2B (2022-06-29) |
HB [auth DC] | SCOP2B Superfamily | Acyl-CoA N-acyltransferases (Nat) | 8098678 | 3000403 | SCOP2B (2022-06-29) |
KB [auth BN] | SCOP2B Superfamily | Ribosomal proteins S24e, L23 and L15e | 8082477 | 3000210 | SCOP2B (2022-06-29) |
TB [auth Aj] | SCOP2B Superfamily | Winged helix DNA-binding domain | 8055720 | 3000034 | SCOP2B (2022-06-29) |
VB [auth AB] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8095265 | 3000135 | SCOP2B (2022-06-29) |
ZB [auth Al] | SCOP2B Superfamily | L30e-like | 8063980 | 3001739 | SCOP2B (2022-06-29) |
BC [auth AD] | SCOP2B Superfamily | Ribosomal protein S30e-like | 8053455 | 3002190 | SCOP2B (2022-06-29) |
CC [auth Am] | SCOP2B Superfamily | S15/NS1 RNA-binding domain | 8052971 | 3001284 | SCOP2B (2022-06-29) |
CC [auth Am] | SCOP2B Superfamily | Homeodomain-like | 8052970 | 3000001 | SCOP2B (2022-06-29) |
GC [auth Bp] | SCOP2B Superfamily | Zn-binding ribosomal proteins | 8101435 | 3001320 | SCOP2B (2022-06-29) |
I [auth Ar] | SCOP2B Superfamily | S13-like H2TH domain | 8101439 | 3000053 | SCOP2B (2022-06-29) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
M [auth BA] | PF03947 | Ribosomal Proteins L2, C-terminal domain (Ribosomal_L2_C) | Ribosomal Proteins L2, C-terminal domain | - | Domain |
M [auth BA] | PF00181 | Ribosomal Proteins L2, RNA binding domain (Ribosomal_L2) | Ribosomal Proteins L2, RNA binding domain | - | Domain |
M [auth BA] | PF00828 | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A (Ribosomal_L27A) | Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A | - | Family |
P [auth BB] | PF01779 | Ribosomal L29e protein family (Ribosomal_L29e) | Ribosomal L29e protein family | - | Family |
Y [auth BE] | PF01159 | Ribosomal protein L6e (Ribosomal_L6e) | Ribosomal protein L6e | - | Family |
Z [auth BW] | PF01246 | Ribosomal protein L24e (Ribosomal_L24e) | Ribosomal protein L24e | - | Domain |
EA [auth BR] | PF01778 | Ribosomal L28e protein family (Ribosomal_L28e) | Ribosomal L28e protein family | - | Family |
EA [auth BR] | PF01280 | Ribosomal protein L19e (Ribosomal_L19e) | Ribosomal protein L19e | - | Family |
JA [auth BS] | PF17777 | Insertion domain in 60S ribosomal protein L10P (RL10P_insert) | Insertion domain in 60S ribosomal protein L10P | This domain is found in prokaryotic and archaeal ribosomal L10 protein [1]. | Domain |
JA [auth BS] | PF00466 | Ribosomal protein L10 (Ribosomal_L10) | Ribosomal protein L10 | - | Family |
JA [auth BS] | PF01775 | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A) | Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A | This family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A. | Domain |
MA [auth BH] | PF00347 | Ribosomal protein L6 (Ribosomal_L6) | Ribosomal protein L6 | - | Domain |
MA [auth BH] | PF00831 | Ribosomal L29 protein (Ribosomal_L29) | Ribosomal L29 protein | - | Family |
NA [auth EA] | PF00557 | Metallopeptidase family M24 (Peptidase_M24) | Metallopeptidase family M24 | This family contains metallopeptidases. It also contains non-peptidase homologues such as the N terminal domain of Spt16 which is a histone H3-H4 binding module [3]. | Domain |
CB [auth BL] | PF00832 | Ribosomal L39 protein (Ribosomal_L39) | Ribosomal L39 protein | - | Family |
CB [auth BL] | PF01294 | Ribosomal protein L13e (Ribosomal_L13e) | Ribosomal protein L13e | - | Family |
SB [auth AA] | PF01667 | Ribosomal protein S27 (Ribosomal_S27e) | Ribosomal protein S27 | - | Family |
HC [auth AF] | PF01092 | Ribosomal protein S6e (Ribosomal_S6e) | Ribosomal protein S6e | - | Family |
HC [auth AF] | PF00400 | WD domain, G-beta repeat (WD40) | WD domain, G-beta repeat | - | Repeat |
KC [auth AG] | PF00253 | Ribosomal protein S14p/S29e (Ribosomal_S14) | Ribosomal protein S14p/S29e | - | Family |
N [auth BV] | PF00238 | Ribosomal protein L14p/L23e (Ribosomal_L14) | Ribosomal protein L14p/L23e | - | Domain |
Q [auth BP] | PF00237 | Ribosomal protein L22p/L17e (Ribosomal_L22) | Ribosomal protein L22p/L17e | This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. | Domain |
Q [auth BP] | PF01780 | Ribosomal L37ae protein family (Ribosomal_L37ae) | Ribosomal L37ae protein family | - | Family |
R [auth BY] | PF16906 | Ribosomal proteins L26 eukaryotic, L24P archaeal (Ribosomal_L26) | Ribosomal proteins L26 eukaryotic, L24P archaeal | - | Family |
R [auth BY] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
B [auth BT] | PF03946 | Ribosomal protein L11, N-terminal domain (Ribosomal_L11_N) | Ribosomal protein L11, N-terminal domain | The N-terminal domain of Ribosomal protein L11 adopts an alpha/beta fold and is followed by the RNA binding C-terminal domain. | Domain |
B [auth BT] | PF00298 | Ribosomal protein L11, RNA binding domain (Ribosomal_L11) | Ribosomal protein L11, RNA binding domain | - | Domain |
T [auth B] | PF17144 | Ribosomal large subunit proteins 60S L5, and 50S L18 (Ribosomal_L5e) | Ribosomal large subunit proteins 60S L5, and 50S L18 | - | Family |
T [auth B] | PF14204 | Ribosomal L18 C-terminal region (Ribosomal_L18_c) | Ribosomal L18 C-terminal region | This domain is the C-terminal end of ribosomal L18/L5 proteins. | Domain |
U [auth BX] | PF00276 | Ribosomal protein L23 (Ribosomal_L23) | Ribosomal protein L23 | - | Family |
W [auth BZ] | PF01777 | Ribosomal L27e protein family (Ribosomal_L27e) | Ribosomal L27e protein family | - | Family |
W [auth BZ] | PF00467 | KOW motif (KOW) | KOW motif | - | Family |
DA [auth BF] | PF00327 | Ribosomal protein L30p/L7e (Ribosomal_L30) | Ribosomal protein L30p/L7e | This family includes prokaryotic L30 and eukaryotic L7. | Domain |
DA [auth BF] | PF01247 | Ribosomal protein L35Ae (Ribosomal_L35Ae) | Ribosomal protein L35Ae | - | Domain |
FA [auth AZ] | PF00318 | Ribosomal protein S2 (Ribosomal_S2) | Ribosomal protein S2 | - | Family |
FA [auth AZ] | PF16122 | 40S ribosomal protein SA C-terminus (40S_SA_C) | 40S ribosomal protein SA C-terminus | - | Family |
IA [auth BC] | PF14374 | 60S ribosomal protein L4 C-terminal domain (Ribos_L4_asso_C) | 60S ribosomal protein L4 C-terminal domain | This family is found at the very C-terminal of 60 ribosomal L4 proteins. | Domain |
IA [auth BC] | PF00573 | Ribosomal protein L4/L1 family (Ribosomal_L4) | Ribosomal protein L4/L1 family | - | Family |
IA [auth BC] | PF01248 | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae) | Ribosomal protein L7Ae/L30e/S12e/Gadd45 family | This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ... | Domain |
QA [auth BI] | PF00252 | Ribosomal protein L16p/L10e (Ribosomal_L16) | Ribosomal protein L16p/L10e | - | Domain |
QA [auth BI] | PF01158 | Ribosomal protein L36e (Ribosomal_L36e) | Ribosomal protein L36e | - | Family |
UA [auth BJ] | PF00281 | Ribosomal protein L5 (Ribosomal_L5) | Ribosomal protein L5 | - | Domain |
UA [auth BJ] | PF01907 | Ribosomal protein L37e (Ribosomal_L37e) | Ribosomal protein L37e | - | Family |
UA [auth BJ] | PF00673 | ribosomal L5P family C-terminus (Ribosomal_L5_C) | ribosomal L5P family C-terminus | This region is found associated with Pfam:PF00281. | Domain |
ZA [auth DA] | PF00583 | Acetyltransferase (GNAT) family (Acetyltransf_1) | Acetyltransferase (GNAT) family | - | Family |
PF13181 | Tetratricopeptide repeat (TPR_8) | Tetratricopeptide repeat | - | Repeat | |
PF12569 | N-terminal acetyltransferase A, auxiliary subunit (NatA_aux_su) | N-terminal acetyltransferase A, auxiliary subunit | - | Repeat | |
GB [auth BM] | PF01929 | Ribosomal protein L14 (Ribosomal_L14e) | Ribosomal protein L14 | - | Family |
HB [auth DC] | PF00583 | Acetyltransferase (GNAT) family (Acetyltransf_1) | Acetyltransferase (GNAT) family | - | Family |
KB [auth BN] | PF00827 | Ribosomal L15 (Ribosomal_L15e) | Ribosomal L15 | - | Family |
LB [auth DD] | PF19026 | HYPK UBA domain (HYPK_UBA) | HYPK UBA domain | This entry represents the UBA domain [1] found at the C-terminus of the HYPK protein and its homologues. This domain in HYPK mediates a protein interaction with the Naa15 C-terminus [1]. | Domain |
VB [auth AB] | PF01200 | Ribosomal protein S28e (Ribosomal_S28e) | Ribosomal protein S28e | - | Family |
YB [auth AC] | PF07650 | KH domain (KH_2) | KH domain | - | Domain |
YB [auth AC] | PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain |
YB [auth AC] | PF01599 | Ribosomal protein S27a (Ribosomal_S27) | Ribosomal protein S27a | This family of ribosomal proteins consists mainly of the 40S ribosomal protein S27a which is synthesised as a C-terminal extension of ubiquitin (CEP). The S27a domain compromises the C-terminal half of the protein. The synthesis of ribosomal proteins ... | Domain |
H [auth AT] | PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain |
BC [auth AD] | PF00900 | Ribosomal family S4e (Ribosomal_S4e) | Ribosomal family S4e | - | Family |
BC [auth AD] | PF08071 | RS4NT (NUC023) domain (RS4NT) | RS4NT (NUC023) domain | This is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1]. | Domain |
EC [auth AE] | PF00177 | Ribosomal protein S7p/S5e (Ribosomal_S7) | Ribosomal protein S7p/S5e | This family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Pharos: Disease Associations Pharos Homepage Annotation
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
J [auth B8] | OMG | Parent Component: G |
J [auth B8] | PSU | Parent Component: U |
M [auth BA] | V5N | Parent Component: HIS |
P [auth BB] | HIC | Parent Component: HIS :  AA0317 :  1'-methyl-L-histidine MOD:00322 |
YA [auth BK] | UNK | AA0317 | : 
PB [auth A2] | 4AC | AA0317 | : 
PB [auth A2] | 6MZ | Parent Component: A :  AA0317 |
PB [auth A2] | A2M | Parent Component: A :  AA0317 |
PB [auth A2] | B8N | AA0317 | : 
PB [auth A2] | G7M | Parent Component: G :  AA0317 |
PB [auth A2] | MA6 | Parent Component: A :  AA0317 |
PB [auth A2] | OMC | Parent Component: C :  AA0317 |
PB [auth A2] | OMG | Parent Component: G :  AA0317 |
PB [auth A2] | OMU | Parent Component: U :  AA0317 |
PB [auth A2] | PSU | Parent Component: U :  AA0317 |
AC [auth Bm] | M3L | Parent Component: LYS :  AA0317 , AA0074 :  1'-methyl-L-histidine MOD:00322 , N6,N6,N6-trimethyl-L-lysine MOD:00083 |
JC [auth Br] | SAC | Parent Component: SER :  AA0317 , AA0074 |
A [auth B5] | 1MA | Parent Component: A :  AA0317 , AA0074 |
A [auth B5] | 5MC | Parent Component: C :  AA0317 , AA0074 |
A [auth B5] | 6MZ | Parent Component: A :  AA0317 , AA0074 |
A [auth B5] | A2M | Parent Component: A :  AA0317 , AA0074 |
A [auth B5] | OMC | Parent Component: C :  AA0317 , AA0074 |
A [auth B5] | OMG | Parent Component: G :  AA0317 , AA0074 |
A [auth B5] | OMU | Parent Component: U :  AA0317 , AA0074 |
A [auth B5] | PSU | Parent Component: U :  AA0317 , AA0074 |
A [auth B5] | UR3 | Parent Component: U :  AA0317 , AA0074 |
A [auth B5] | UY1 | AA0317 , AA0074 | : 
L [auth As] | NMM | Parent Component: ARG :  AA0317 , AA0074 |
X [auth Aw] | HY3 | Parent Component: PRO :  AA0317 , AA0074 , AA0029 :  1'-methyl-L-histidine MOD:00322 , N6,N6,N6-trimethyl-L-lysine MOD:00083 , 3-hydroxy-L-proline MOD:00038 |
AA [auth Au] | AME | Parent Component: MET :  AA0317 , AA0074 , AA0029 |
BA [auth Ba] | V5N | Parent Component: HIS :  AA0317 , AA0074 , AA0029 |
C [auth Bb] | MLZ | Parent Component: LYS :  AA0317 , AA0074 , AA0029 , AA0076 :  1'-methyl-L-histidine MOD:00322 , N6,N6,N6-trimethyl-L-lysine MOD:00083 , 3-hydroxy-L-proline MOD:00038 , N6-methyl-L-lysine MOD:00085 |
FA [auth AZ] | SAC | Parent Component: SER :  AA0317 , AA0074 , AA0029 , AA0076 |
IA [auth BC] | AYA | Parent Component: ALA :  AA0317 , AA0074 , AA0029 , AA0076 |
DC [auth Bo] | MLZ | Parent Component: LYS :  AA0317 , AA0074 , AA0029 , AA0076 , AA0076 :  1'-methyl-L-histidine MOD:00322 , N6,N6,N6-trimethyl-L-lysine MOD:00083 , 3-hydroxy-L-proline MOD:00038 , N6-methyl-L-lysine MOD:00085 , N6-methyl-L-lysine MOD:00085 |
FC [auth An] | IAS | AA0317 , AA0074 , AA0029 , AA0076 , AA0076 | : 
I [auth Ar] | SAC | Parent Component: SER :  AA0317 , AA0074 , AA0029 , AA0076 , AA0076 |