9EHO | pdb_00009eho

Octopus ribosome, hybrid 80S

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
T [auth F]	PF00327	Ribosomal protein L30p/L7e (Ribosomal_L30)	Ribosomal protein L30p/L7e	This family includes prokaryotic L30 and eukaryotic L7.	Domain
U [auth G]	PF01248	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...	This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].	Domain
CB [auth EE]	PF07650	KH domain (KH_2)	KH domain		Domain
CB [auth EE]	PF00189	Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)	Ribosomal protein S3, C-terminal domain	This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.	Domain
SB [auth TT]	PF00416	Ribosomal protein S13/S18 (Ribosomal_S13)	Ribosomal protein S13/S18	-	Family
I [auth V]	PF00238	Ribosomal protein L14p/L23e (Ribosomal_L14)	Ribosomal protein L14p/L23e		Domain
YB [auth ZZ]	PF01282	Ribosomal protein S24e (Ribosomal_S24e)	Ribosomal protein S24e	-	Family
XB [auth YY]	PF00164	Ribosomal protein S12/S23 (Ribosom_S12_S23)	Ribosomal protein S12/S23	This protein is known as S12 in bacteria and archaea and S23 in eukaryotes.	Domain
WB [auth XX]	PF00410	Ribosomal protein S8 (Ribosomal_S8)	Ribosomal protein S8		Domain
VB [auth WW]	PF01249	Ribosomal protein S21e (Ribosomal_S21e)	Ribosomal protein S21e	-	Family
QB [auth RR]	PF00380	Ribosomal protein S9/S16 (Ribosomal_S9)	Ribosomal protein S9/S16	-	Family
JB [auth JJ]	PF01201	Ribosomal protein S8e (Ribosomal_S8e)	Ribosomal protein S8e	-	Family
DB [auth FF]	PF00900	Ribosomal family S4e (Ribosomal_S4e)	Ribosomal family S4e	-	Family
DB [auth FF]	PF16121	40S ribosomal protein S4 C-terminus (40S_S4_C)	40S ribosomal protein S4 C-terminus	-	Family
DB [auth FF]	PF08071	RS4NT (NUC023) domain (RS4NT)	RS4NT (NUC023) domain	This is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1].	Domain
DB [auth FF]	PF01479	S4 domain (S4)	S4 domain	The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...	The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.	Domain
DB [auth FF]	PF00467	KOW motif (KOW)	KOW motif	-	Family
FA [auth W]	PF01246	Ribosomal protein L24e (Ribosomal_L24e)	Ribosomal protein L24e		Domain
CA [auth S]	PF01775	Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A (Ribosomal_L18A)	Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A	This family includes: archaeal 50S ribosomal protein L18Ae, often referred to as L20e or LX; fungal 60S ribosomal protein L20; and higher eukaryote 60S ribosomal protein L18A.	Domain
BA [auth R]	PF01280	Ribosomal protein L19e, N-terminal domain (Ribosomal_L19e)	Ribosomal protein L19e, N-terminal domain	This domain is found at the N-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology.	Domain
BA [auth R]	PF25476	Ribosomal protein L19e, C-terminal domain (Ribosomal_L19e_C)	Ribosomal protein L19e, C-terminal domain	This domain is found at the C-terminal end of the large ribosomal subunit protein eL19 found in eukaryotes and archaea. This is an helical domain that assumes an orthogonal bundle topology.	Domain
W [auth J]	PF00281	Ribosomal protein L5 (Ribosomal_L5)	Ribosomal protein L5		Domain
W [auth J]	PF00673	ribosomal L5P family C-terminus (Ribosomal_L5_C)	ribosomal L5P family C-terminus	This region is found associated with Pfam:PF00281.	Domain
S [auth E]	PF01655	Ribosomal protein L32 (Ribosomal_L32e)	Ribosomal protein L32	-	Family
Q [auth C]	PF01248	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family	This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...	This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
D [auth A]	Large ribosomal subunit protein uL2	-	-	-
L [auth g]	Large ribosomal subunit protein eL34	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
M [auth j]	Ribosomal protein L37	-	-	-
O [auth o]	Large ribosomal subunit protein eL42	-	-	-
T [auth F]	60S ribosomal protein L7 isoform X1	DNA binding binding nucleic acid binding RNA binding structural molecule activity structural constituent of ribosome structural constituent of chromatin	protein-containing complex organization protein-DNA complex assembly cellular component organization protein-DNA complex organization cellular component biogenesis cellular component assembly chromatin organization protein-containing complex assembly chromatin remodeling cellular process cellular component organization or biogenesis nucleosome assembly nucleosome organization ribonucleoprotein complex biogenesis protein-containing complex organization protein-DNA complex assembly cellular component organization protein-DNA complex organization cellular component biogenesis cellular component assembly chromatin organization protein-containing complex assembly chromatin remodeling cellular process cellular component organization or biogenesis nucleosome assembly nucleosome organization ribonucleoprotein complex biogenesis RNA metabolic process rRNA processing nucleobase-containing compound metabolic process RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process RNA processing rRNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process ribosomal large subunit biogenesis macromolecule biosynthetic process nucleic acid metabolic process maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) biosynthetic process metabolic process macromolecule metabolic process maturation of LSU-rRNA	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit protein-DNA complex nucleosome chromatin chromosome
U [auth G]	60S ribosomal protein L7a	RNA binding binding nucleic acid binding	cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular process cellular component organization or biogenesis	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
V [auth H]	Large ribosomal subunit protein uL6	-	-	-
DA [auth T]	60S ribosomal protein L21	-	-	-
IA [auth Z]	Large ribosomal subunit protein eL27	-	-	-
SA [auth n]	eS32	-	-	-
WA [auth BB]	Small ribosomal subunit protein uS2	-	-	-
YA [auth CC]	Small ribosomal subunit protein eS1	-	-	-
AB [auth DD]	Small ribosomal subunit protein uS5	-	-	-
CB [auth EE]	40S ribosomal protein S3	RNA binding binding nucleic acid binding structural molecule activity structural constituent of ribosome	cellular response to stimulus positive regulation of cell communication regulation of cellular process positive regulation of signal transduction response to stimulus signaling positive regulation of biological process regulation of signal transduction regulation of programmed cell death positive regulation of apoptotic signaling pathway cell communication positive regulation of response to stimulus signal transduction positive regulation of cellular process cellular response to stimulus positive regulation of cell communication regulation of cellular process positive regulation of signal transduction response to stimulus signaling positive regulation of biological process regulation of signal transduction regulation of programmed cell death positive regulation of apoptotic signaling pathway cell communication positive regulation of response to stimulus signal transduction positive regulation of cellular process regulation of biological process regulation of signaling positive regulation of programmed cell death regulation of apoptotic process biological regulation cell death positive regulation of apoptotic process apoptotic signaling pathway regulation of response to stimulus regulation of cell communication cellular process apoptotic process programmed cell death positive regulation of signaling regulation of apoptotic signaling pathway biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol membrane-bounded organelle nucleus intracellular membrane-bounded organelle
EB [auth ff]	eS30	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
GB [auth HH]	Small ribosomal subunit protein eS6	-	-	-
HB [auth hh]	Small ribosomal subunit protein RACK1	-	-	-
IB [auth II]	40S ribosomal protein S7	structural molecule activity structural constituent of ribosome	ribonucleoprotein complex biogenesis RNA metabolic process primary metabolic process rRNA processing gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular component biogenesis RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process biosynthetic process ribonucleoprotein complex biogenesis RNA metabolic process primary metabolic process rRNA processing gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process nucleobase-containing compound metabolic process cellular component biogenesis RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process biosynthetic process metabolic process cellular process macromolecule metabolic process cellular component organization or biogenesis RNA processing rRNA metabolic process ribosomal small subunit biogenesis protein metabolic process translation protein biosynthetic process	90S preribosome preribosome protein-containing complex ribonucleoprotein complex cytosolic small ribosomal subunit intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle membraneless organelle 90S preribosome preribosome protein-containing complex ribonucleoprotein complex cytosolic small ribosomal subunit intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle membraneless organelle ribosome cytoplasm cytosol membrane-bounded organelle nucleus membrane-enclosed lumen nuclear protein-containing complex intracellular membrane-bounded organelle small-subunit processome nucleolus intracellular organelle lumen organelle lumen nuclear lumen
KB [auth KK]	Small ribosomal subunit protein uS4	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding	cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular process cellular component organization or biogenesis ribosomal small subunit biogenesis biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process cellular component biogenesis ribosome biogenesis ribonucleoprotein complex biogenesis cellular process cellular component organization or biogenesis ribosomal small subunit biogenesis biosynthetic process metabolic process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
MB [auth MM]	40S ribosomal protein S11	RNA binding binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
NB [auth OO]	Small ribosomal subunit protein uS15	-	-	-
PB [auth QQ]	Small ribosomal subunit protein uS19	-	-	-
SB [auth TT]	Small ribosomal subunit protein uS13	RNA binding binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle ribonucleoprotein complex organelle membraneless organelle ribosome
ZB [auth 2]	tRNA	-	-	-
AC [auth 3]	tRNA	-	-	-
I [auth V]	Large ribosomal subunit protein uL14	structural molecule activity structural constituent of ribosome RNA binding binding rRNA binding nucleic acid binding large ribosomal subunit rRNA binding	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
BC [auth 1]	RNA (5'-R(PAPCPCPAPAPAPAPAPCPC)-3')	-	-	-
H [auth Q]	Large ribosomal subunit protein uL15/eL18 domain-containing protein	-	-	-
YB [auth ZZ]	40S ribosomal protein S24	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
XB [auth YY]	Small ribosomal subunit protein uS12	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome
WB [auth XX]	40S ribosomal protein S15a	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
VB [auth WW]	40S ribosomal protein S21	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	intracellular organelle cellular anatomical structure intracellular anatomical structure cytosolic ribosome organelle membraneless organelle intracellular membraneless organelle ribosome cytoplasm cytosol protein-containing complex ribonucleoprotein complex rough endoplasmic reticulum membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure cytosolic ribosome organelle membraneless organelle intracellular membraneless organelle ribosome cytoplasm cytosol protein-containing complex ribonucleoprotein complex rough endoplasmic reticulum membrane-bounded organelle endoplasmic reticulum intracellular membrane-bounded organelle endomembrane system
UB [auth VV]	Small ribosomal subunit protein uS10	-	-	-
TB [auth UU]	40S ribosomal protein S19	-	-	-
RB [auth SS]	Small ribosomal subunit protein eS17	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex ribonucleoprotein complex intracellular organelle organelle membraneless organelle intracellular membraneless organelle ribosome
G [auth P]	Large ribosomal subunit protein uL22	-	-	-
QB [auth RR]	40S ribosomal protein S16	RNA binding binding nucleic acid binding structural molecule activity structural constituent of ribosome	ribonucleoprotein complex biogenesis RNA metabolic process rRNA processing maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) cellular component biogenesis nucleobase-containing compound metabolic process RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process maturation of SSU-rRNA cellular component organization or biogenesis RNA processing rRNA metabolic process primary metabolic process ribonucleoprotein complex biogenesis RNA metabolic process rRNA processing maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) cellular component biogenesis nucleobase-containing compound metabolic process RNA biosynthetic process ribosome biogenesis nucleic acid biosynthetic process maturation of SSU-rRNA cellular component organization or biogenesis RNA processing rRNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process ribosomal small subunit biogenesis nucleic acid metabolic process biosynthetic process cellular process metabolic process macromolecule metabolic process protein metabolic process translation protein biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
OB [auth PP]	40S ribosomal protein S14a	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
LB [auth LL]	Plectin/eS10 N-terminal domain-containing protein	-	-	-
JB [auth JJ]	40S ribosomal protein S8	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
F [auth I]	Large ribosomal subunit protein uL16	-	-	-
FB [auth GG]	Ribosomal S5	RNA binding binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle ribosomal subunit intracellular organelle cellular anatomical structure ribonucleoprotein complex organelle membraneless organelle ribosome cytosolic ribosome cytoplasm cytosol
DB [auth FF]	40S ribosomal protein S4	RNA binding binding rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosolic small ribosomal subunit protein-containing complex intracellular anatomical structure small ribosomal subunit intracellular membraneless organelle intracellular organelle ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol
BB [auth dd]	Small ribosomal subunit protein eS28	-	-	-
ZA [auth cc]	40S ribosomal protein S27	-	-	-
XA [auth ee]	Small ribosomal subunit protein uS14	-	-	-
E [auth B]	60S ribosomal protein L3	-	-	-
VA [auth bb]	40S ribosomal protein S26	-	-	-
UA [auth aa]	40S ribosomal protein S25	structural molecule activity structural constituent of ribosome	-	intracellular organelle cellular anatomical structure intracellular anatomical structure cytosolic ribosome organelle membraneless organelle intracellular membraneless organelle ribosome cytoplasm cytosol protein-containing complex ribonucleoprotein complex
TA [auth AA]	18S rRNA	-	-	-
RA [auth r]	Large ribosomal subunit protein eL28	-	-	-
QA [auth l]	Large ribosomal subunit protein eL39	-	-	-
PA [auth k]	eL38	-	-	-
OA [auth i]	Large ribosomal subunit protein eL36	-	-	-
NA [auth h]	60S ribosomal protein L35	-	-	-
MA [auth f]	Large ribosomal subunit protein eL33	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
LA [auth d]	Large ribosomal subunit protein eL31	-	-	-
KA [auth c]	Large ribosomal subunit protein eL30	RNA binding binding nucleic acid binding structural molecule activity structural constituent of ribosome	-	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
JA [auth b]	60S ribosomal protein L29	-	-	-
HA [auth Y]	Large ribosomal subunit protein uL24	-	-	-
GA [auth X]	Large ribosomal subunit protein uL23 N-terminal domain-containing protein	-	-	-
FA [auth W]	Large ribosomal subunit protein eL24	RNA binding binding nucleic acid binding mRNA binding structural molecule activity structural constituent of ribosome	primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
EA [auth U]	Large ribosomal subunit protein eL22	RNA binding binding nucleic acid binding structural molecule activity structural constituent of ribosome	primary metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process biosynthetic process cytoplasmic translation metabolic process cellular process protein metabolic process macromolecule metabolic process	protein-containing complex ribonucleoprotein complex cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle organelle membraneless organelle intracellular membraneless organelle ribosome
C [auth 8]	5.8S rRNA	-	-	-
CA [auth S]	60S ribosomal protein L18a	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex intracellular organelle cellular anatomical structure intracellular anatomical structure organelle membraneless organelle intracellular membraneless organelle ribosome
BA [auth R]	Ribosomal protein L19	RNA binding binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
AA [auth O]	Large ribosomal subunit protein uL13	-	-	-
Z [auth N]	Ribosomal protein L15	-	-	-
Y [auth M]	Large ribosomal subunit protein eL14	-	-	-
X [auth L]	Large ribosomal subunit protein eL13	-	-	-
W [auth J]	60S ribosomal protein L11	RNA binding binding rRNA binding nucleic acid binding structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex ribonucleoprotein complex cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle organelle membraneless organelle intracellular membraneless organelle ribosome membrane-bounded organelle nucleus intracellular membrane-bounded organelle
B [auth 7]	5S rRNA	-	-	-
S [auth E]	Large ribosomal subunit protein eL6	-	-	-
R [auth D]	Large ribosomal subunit protein uL18 C-terminal eukaryotes domain-containing protein	-	-	-
Q [auth C]	Large ribosomal subunit protein uL4 C-terminal domain-containing protein	-	-	-
P [auth p]	Large ribosomal subunit protein eL43	-	-	-
N [auth m]	Ubiquitin-ribosomal protein eL40 fusion protein	-	-	-
K [auth e]	60S ribosomal protein L32	structural molecule activity structural constituent of ribosome	biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process translation gene expression protein biosynthetic process macromolecule biosynthetic process	protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol protein-containing complex intracellular anatomical structure intracellular membraneless organelle intracellular organelle ribosomal subunit cytosolic large ribosomal subunit cellular anatomical structure cytosolic ribosome organelle ribonucleoprotein complex membraneless organelle ribosome cytoplasm cytosol large ribosomal subunit
J [auth a]	Large ribosomal subunit protein uL15	-	-	-
A [auth 5]	28S rRNA	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
L [auth g]	IPR008195	Large ribosomal subunit protein eL34	Family
L [auth g]	IPR038562	Large ribosomal subunit protein eL34, C-terminal domain superfamily	Homologous Superfamily
L [auth g]	IPR018065	Large ribosomal subunit protein eL34, conserved site	Conserved Site
L [auth g]	IPR047868	Large ribosomal subunit protein eL34, eukaryota/archaea	Family
T [auth F]	IPR036919	Large ribosomal subunit protein uL30, ferredoxin-like fold domain superfamily	Homologous Superfamily
T [auth F]	IPR035808	Large ribosomal subunit protein uL30, eukaryota/archaea	Domain
T [auth F]	IPR005998	Large ribosomal subunit protein uL30, eukaryota	Family
T [auth F]	IPR039699	Large ribosomal subunit protein uL30	Family
T [auth F]	IPR005819	Linker histone H1/H5	Family
T [auth F]	IPR012988	Large ribosomal subunit protein uL30, N-terminal, eukaryota	Domain
T [auth F]	IPR016082	Large ribosomal subunit protein uL30-like, ferredoxin-like fold domain	Domain
U [auth G]	IPR050257	Large ribosomal subunit protein eL8/uL1-like	Family
U [auth G]	IPR004038	Ribosomal protein eL8/eL30/eS12/Gadd45	Domain
U [auth G]	IPR004037	Large ribosomal subunit protein eL8-like, conserved site	Conserved Site
U [auth G]	IPR029064	Ribosomal protein eL30-like superfamily	Homologous Superfamily
U [auth G]	IPR018492	Ribosomal protein eL8/Nhp2 family	Family
U [auth G]	IPR001921	Large ribosomal subunit protein eL8, eukaryota	Family
CB [auth EE]	IPR005703	Small ribosomal subunit protein uS3, eukaryota/archaeal	Family
CB [auth EE]	IPR001351	Small ribosomal subunit protein uS3, C-terminal	Domain
CB [auth EE]	IPR057258	Small ribosomal subunit protein uS3	Family
CB [auth EE]	IPR009019	K homology domain superfamily, prokaryotic type	Homologous Superfamily
CB [auth EE]	IPR004044	K Homology domain, type 2	Domain
CB [auth EE]	IPR015946	K homology domain-like, alpha/beta	Homologous Superfamily
CB [auth EE]	IPR036419	Ribosomal protein S3, C-terminal domain superfamily	Homologous Superfamily
CB [auth EE]	IPR018280	Small ribosomal subunit protein uS3, conserved site	Conserved Site
EB [auth ff]	IPR029071	Ubiquitin-like domain superfamily	Homologous Superfamily
EB [auth ff]	IPR000626	Ubiquitin-like domain	Domain
EB [auth ff]	IPR006846	Small ribosomal subunit protein eS30	Family
IB [auth II]	IPR000554	Small ribosomal subunit protein eS7	Family
IB [auth II]	IPR047861	Small ribosomal subunit protein eS7, conserved site	Conserved Site
KB [auth KK]	IPR018079	Small ribosomal subunit protein uS4, conserved site	Conserved Site
KB [auth KK]	IPR002942	RNA-binding S4 domain	Domain
KB [auth KK]	IPR001912	Small ribosomal subunit protein uS4, N-terminal	Domain
KB [auth KK]	IPR036986	RNA-binding S4 domain superfamily	Homologous Superfamily
KB [auth KK]	IPR022801	Small ribosomal subunit protein uS4	Family
KB [auth KK]	IPR005710	Small ribosomal subunit protein uS4, eukaryota/archaea	Family
MB [auth MM]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
MB [auth MM]	IPR000266	Small ribosomal subunit protein uS17	Family
MB [auth MM]	IPR032440	Small ribosomal subunit protein uS17, N-terminal	Domain
MB [auth MM]	IPR028333	Small ribosomal subunit protein uS17, archaeal/eukaryotic	Family
SB [auth TT]	IPR027437	Small ribosomal subunit protein uS13, C-terminal	Homologous Superfamily
SB [auth TT]	IPR001892	Small ribosomal subunit protein uS13	Family
SB [auth TT]	IPR018269	Small ribosomal subunit protein uS13, conserved site	Conserved Site
SB [auth TT]	IPR010979	Small ribosomal subunit protein uS13-like, H2TH	Homologous Superfamily
I [auth V]	IPR036853	Large ribosomal subunit protein uL14 superfamily	Homologous Superfamily
I [auth V]	IPR000218	Large ribosomal subunit protein uL14	Family
I [auth V]	IPR019972	Large ribosomal subunit protein uL14, conserved site	Conserved Site
YB [auth ZZ]	IPR053709	Eukaryotic Ribosomal Protein eS24	Homologous Superfamily
YB [auth ZZ]	IPR001976	Small ribosomal subunit protein eS24	Family
YB [auth ZZ]	IPR012678	Ribosomal protein uL23/eL15/eS24 core domain superfamily	Homologous Superfamily
YB [auth ZZ]	IPR018098	Small ribosomal subunit protein eS24 conserved site	Conserved Site
XB [auth YY]	IPR006032	Small ribosomal subunit protein uS12	Family
XB [auth YY]	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
XB [auth YY]	IPR005680	Small ribosomal subunit protein uS12, eukaryota/archaea	Family
WB [auth XX]	IPR000630	Small ribosomal subunit protein uS8	Family
WB [auth XX]	IPR047863	Small ribosomal subunit protein uS8, conserved site	Conserved Site
WB [auth XX]	IPR035987	Small ribosomal subunit protein uS8 superfamily	Homologous Superfamily
VB [auth WW]	IPR038579	Small ribosomal subunit protein eS21 superfamily	Homologous Superfamily
VB [auth WW]	IPR001931	Small ribosomal subunit protein eS21	Family
RB [auth SS]	IPR036401	Small ribosomal subunit protein eS17 superfamily	Homologous Superfamily
RB [auth SS]	IPR001210	Small ribosomal subunit protein eS17	Family
RB [auth SS]	IPR018273	Small ribosomal subunit protein eS17, conserved site	Conserved Site
QB [auth RR]	IPR020574	Small ribosomal subunit protein uS9, conserved site	Conserved Site
QB [auth RR]	IPR020568	Ribosomal protein uS5 domain 2-type superfamily	Homologous Superfamily
QB [auth RR]	IPR000754	Small ribosomal subunit protein uS9	Family
QB [auth RR]	IPR014721	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Homologous Superfamily
OB [auth PP]	IPR001971	Small ribosomal subunit protein uS11	Family
OB [auth PP]	IPR036967	Small ribosomal subunit protein uS11 superfamily	Homologous Superfamily
OB [auth PP]	IPR018102	Small ribosomal subunit protein uS11, conserved site	Conserved Site
JB [auth JJ]	IPR001047	Small ribosomal subunit protein eS8	Family
JB [auth JJ]	IPR022309	Ribosomal protein eS8/ribosomal biogenesis NSA2	Family
FB [auth GG]	IPR020606	Small ribosomal subunit protein uS7, conserved site	Conserved Site
FB [auth GG]	IPR000235	Small ribosomal subunit protein uS7	Family
FB [auth GG]	IPR036823	Small ribosomal subunit protein uS7 domain superfamily	Homologous Superfamily
FB [auth GG]	IPR023798	Small ribosomal subunit protein uS7 domain	Domain
FB [auth GG]	IPR005716	Ribosomal protein uS7, eukaryotic/archaeal	Family
DB [auth FF]	IPR018199	Small ribosomal subunit protein eS4, N-terminal, conserved site	Conserved Site
DB [auth FF]	IPR013843	Small ribosomal subunit protein eS4, N-terminal	Domain
DB [auth FF]	IPR032277	Small ribosomal subunit protein eS4, C-terminal domain	Domain
DB [auth FF]	IPR002942	RNA-binding S4 domain	Domain
DB [auth FF]	IPR013845	Small ribosomal subunit protein eS4, central region	Domain
DB [auth FF]	IPR000876	Small ribosomal subunit protein eS4	Family
DB [auth FF]	IPR014722	Large ribosomal subunit protein uL2, domain 2	Homologous Superfamily
DB [auth FF]	IPR038237	Small ribosomal subunit protein eS4, central domain superfamily	Homologous Superfamily
DB [auth FF]	IPR041982	Small ribosomal subunit protein eS4, KOW domain	Domain
DB [auth FF]	IPR036986	RNA-binding S4 domain superfamily	Homologous Superfamily
DB [auth FF]	IPR005824	KOW	Domain
UA [auth aa]	IPR004977	Small ribosomal subunit protein eS25	Family
MA [auth f]	IPR038661	Large ribosomal subunit protein eL33 superfamily	Homologous Superfamily
MA [auth f]	IPR009000	Translation protein, beta-barrel domain superfamily	Homologous Superfamily
MA [auth f]	IPR001780	Large ribosomal subunit protein eL33	Family
MA [auth f]	IPR018266	Large ribosomal subunit protein eL33, conserved site	Conserved Site
KA [auth c]	IPR022991	Large ribosomal subunit protein eL30, conserved site	Conserved Site
KA [auth c]	IPR004038	Ribosomal protein eL8/eL30/eS12/Gadd45	Domain
KA [auth c]	IPR000231	Large ribosomal subunit protein eL30	Family
KA [auth c]	IPR039109	Large ribosomal subunit protein eL30-like	Family
KA [auth c]	IPR029064	Ribosomal protein eL30-like superfamily	Homologous Superfamily
FA [auth W]	IPR011017	TRASH domain	Domain
FA [auth W]	IPR056366	Large ribosomal subunit protein eL24	Family
FA [auth W]	IPR000988	Large ribosomal subunit protein eL24-related, N-terminal	Domain
FA [auth W]	IPR038630	Ribosomal protein L24e/L24 superfamily	Homologous Superfamily
EA [auth U]	IPR002671	Large ribosomal subunit protein eL22	Family
EA [auth U]	IPR038526	Large ribosomal subunit protein eL22 superfamily	Homologous Superfamily
CA [auth S]	IPR028877	Large ribosomal subunit protein eL20	Family
CA [auth S]	IPR023573	Large ribosomal subunit protein eL20 domain	Domain
CA [auth S]	IPR021138	Large ribosomal subunit protein eL20, eukaryota	Family
BA [auth R]	IPR015972	Large ribosomal subunit protein eL19, domain 1	Homologous Superfamily
BA [auth R]	IPR057259	Ribosomal protein L19e, N-terminal domain	Domain
BA [auth R]	IPR039547	Large ribosomal subunit protein eL19	Family
BA [auth R]	IPR023638	Large ribosomal subunit protein eL19, conserved site	Conserved Site
BA [auth R]	IPR035970	Large ribosomal subunit protein eL19 superfamily	Homologous Superfamily
BA [auth R]	IPR057260	Ribosomal protein L19e, C-terminal domain	Domain
BA [auth R]	IPR000196	Large ribosomal subunit protein eL19 domain	Domain
BA [auth R]	IPR033935	Large ribosomal subunit protein eL19, eukaryotic	Domain
W [auth J]	IPR020929	Large ribosomal subunit protein uL5, conserved site	Conserved Site
W [auth J]	IPR022803	Large ribosomal subunit protein uL5 domain superfamily	Homologous Superfamily
W [auth J]	IPR031309	Large ribosomal subunit protein uL5, C-terminal	Domain
W [auth J]	IPR057266	Large ribosomal subunit protein uL5, eukaryota/archaea	Family
W [auth J]	IPR031310	Large ribosomal subunit protein uL5, N-terminal	Domain
W [auth J]	IPR002132	Large ribosomal subunit protein uL5	Family
K [auth e]	IPR036351	Large ribosomal subunit protein eL32 superfamily	Homologous Superfamily
K [auth e]	IPR001515	Large ribosomal subunit protein eL32	Family
K [auth e]	IPR018263	Large ribosomal subunit protein eL32, conserved site	Conserved Site

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.