9DEI | pdb_00009dei

Trypanosoma brucei mitochondrial RNA-editing catalytic complex 1, U-deletion (RECC1)

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	e9deiL1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F:	ECOD (v295.2)
F	e9deiF1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F:	ECOD (v295.2)
J	e9deiJ1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F:	ECOD (v295.2)
O	e9deiO1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F:	ECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
L	KREPA5	-	-	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle
I	RNA editing complex protein	-	nucleobase-containing compound metabolic process RNA modification macromolecule modification RNA metabolic process metabolic process cellular process primary metabolic process macromolecule metabolic process nucleic acid metabolic process	membrane-bounded organelle mitochondrial protein-containing complex protein-containing complex intracellular anatomical structure catalytic complex mitochondrion mRNA editing complex mitochondrial mRNA editing complex intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure organelle cytoplasm
G, K	KREPA2	cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding	mRNA modification RNA metabolic process primary metabolic process mRNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process RNA modification macromolecule modification metabolic process cellular process macromolecule metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle protein-containing complex catalytic complex mRNA editing complex
F, N	RNA-editing complex protein MP42	3'-5'-RNA exonuclease activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA exonuclease activity, producing 5'-phosphomonoesters 3'-5' exonuclease activity RNA exonuclease activity RNA nuclease activity hydrolase activity hydrolase activity, acting on ester bonds nuclease activity exonuclease activity catalytic activity cation binding transition metal ion binding 3'-5'-RNA exonuclease activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA exonuclease activity, producing 5'-phosphomonoesters 3'-5' exonuclease activity RNA exonuclease activity RNA nuclease activity hydrolase activity hydrolase activity, acting on ester bonds nuclease activity exonuclease activity catalytic activity cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding endonuclease activity RNA endonuclease activity producing 5'-phosphomonoesters, hydrolytic mechanism RNA endonuclease activity	response to stimulus response to metal ion response to chemical mRNA modification RNA metabolic process primary metabolic process mRNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process RNA modification macromolecule modification metabolic process cellular process macromolecule metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle kinetoplast
E, H, J, M, P	MP18 RNA editing complex protein, putative	DNA binding binding single-stranded DNA binding nucleic acid binding	-	-
D	RNA editing complex protein MP46	RNA binding binding nucleic acid binding	nucleobase-containing compound metabolic process RNA modification macromolecule modification RNA metabolic process metabolic process cellular process primary metabolic process macromolecule metabolic process nucleic acid metabolic process	protein-containing complex catalytic complex mRNA editing complex cellular anatomical structure intracellular anatomical structure cytoplasm
C	MP90	ribonuclease III activity double-stranded RNA-specific ribonuclease activity endonuclease activity RNA endonuclease activity producing 5'-phosphomonoesters, hydrolytic mechanism catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid RNA nuclease activity hydrolase activity hydrolase activity, acting on ester bonds nuclease activity RNA endonuclease activity catalytic activity	RNA metabolic process primary metabolic process gene expression nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process biosynthetic process metabolic process cellular process RNA processing macromolecule metabolic process	-
B	KREPB8; RNA editing catalytic complex core protein, B8	-	-	-
Q [auth R]	tRNA-valine (anticodon AAC)	-	-	-
O	RNA-editing complex protein MP81	protein binding binding alpha-catenin binding cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	RNA metabolic process primary metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process RNA modification macromolecule modification mitochondrial RNA modification metabolic process cellular process mitochondrial RNA metabolic process macromolecule metabolic process RNA nucleotide insertion RNA nucleotide deletion	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle
A	KREPB5; RNA-editing catalytic complex core protein, B5	-	nucleobase-containing compound metabolic process RNA modification macromolecule modification RNA metabolic process metabolic process cellular process primary metabolic process macromolecule metabolic process nucleic acid metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
L	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
I	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
G, K	IPR017086	RNA editing complex, structural subunit MP63	Family
G, K	IPR060760	RNA-editing complex protein MP81-like, N-terminal domain	Domain
G, K	IPR013087	Zinc finger C2H2-type	Domain
G, K	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
F, N	IPR017083	RNA editing complex, nuclease subunit MP42	Family
F, N	IPR060760	RNA-editing complex protein MP81-like, N-terminal domain	Domain
F, N	IPR013087	Zinc finger C2H2-type	Domain
F, N	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
F, N	IPR036236	Zinc finger C2H2 superfamily	Homologous Superfamily
E, H, J, M, P	IPR060760	RNA-editing complex protein MP81-like, N-terminal domain	Domain
E, H, J, M, P	IPR017084	RNA editing complex, subunit MP18	Family
E, H, J, M, P	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
C	IPR036389	Ribonuclease III, endonuclease domain superfamily	Homologous Superfamily
O	IPR060760	RNA-editing complex protein MP81-like, N-terminal domain	Domain
O	IPR013087	Zinc finger C2H2-type	Domain
O	IPR012340	Nucleic acid-binding, OB-fold	Homologous Superfamily
O	IPR017085	RNA editing complex, structural subunit MP81	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.