9DCC | pdb_00009dcc

The Structure of AAV5 at 55 Degrees Celsius

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
AB [auth 1]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
BA [auth b]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
BB [auth 2]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
CA [auth c]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
CB [auth 3]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
DA [auth d]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
DB [auth 4]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
EA [auth e]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
EB [auth 5]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
FB [auth 6]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
GA [auth g]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
GB [auth 7]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
HA [auth h]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
HB [auth 8]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
JA [auth j]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
KA [auth k]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
LA [auth l]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
MA [auth m]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
NA [auth n]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
OA [auth o]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
PA [auth p]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
QA [auth q]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
RA [auth r]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
SA [auth s]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
TA [auth t]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
UA [auth u]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
WA [auth w]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
X	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
XA [auth x]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
Y	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
YA [auth y]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
Z	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
ZA [auth z]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
VA [auth v]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
IA [auth i]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
FA [auth f]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)
AA [auth a]	SCOP2B Superfamily	ssDNA viruses	8071450	3000931	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	WD40	e9dccA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
AB [auth 1]	WD40	e9dcc11	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
B	WD40	e9dccB1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
BA [auth b]	WD40	e9dccb1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
BB [auth 2]	WD40	e9dcc21	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
C	WD40	e9dccC1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
CA [auth c]	WD40	e9dccc1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
CB [auth 3]	WD40	e9dcc31	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
D	WD40	e9dccD1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
DA [auth d]	WD40	e9dccd1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
DB [auth 4]	WD40	e9dcc41	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
EA [auth e]	WD40	e9dcce1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
EB [auth 5]	WD40	e9dcc51	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
F	WD40	e9dccF1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
FB [auth 6]	WD40	e9dcc61	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
G	WD40	e9dccG1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
GA [auth g]	WD40	e9dccg1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
GB [auth 7]	WD40	e9dcc71	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
HA [auth h]	WD40	e9dcch1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
HB [auth 8]	WD40	e9dcc81	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
I	WD40	e9dccI1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
JA [auth j]	WD40	e9dccj1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
K	WD40	e9dccK1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
KA [auth k]	WD40	e9dcck1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
L	WD40	e9dccL1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
LA [auth l]	WD40	e9dccl1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
M	WD40	e9dccM1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
MA [auth m]	WD40	e9dccm1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
N	WD40	e9dccN1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
NA [auth n]	WD40	e9dccn1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
O	WD40	e9dccO1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
OA [auth o]	WD40	e9dcco1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
PA [auth p]	WD40	e9dccp1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
Q	WD40	e9dccQ1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
QA [auth q]	WD40	e9dccq1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
RA [auth r]	WD40	e9dccr1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
S	WD40	e9dccS1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
SA [auth s]	WD40	e9dccs1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
TA [auth t]	WD40	e9dcct1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
U	WD40	e9dccU1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
UA [auth u]	WD40	e9dccu1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
V	WD40	e9dccV1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
W	WD40	e9dccW1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
WA [auth w]	WD40	e9dccw1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
X	WD40	e9dccX1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
XA [auth x]	WD40	e9dccx1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
Y	WD40	e9dccY1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
YA [auth y]	WD40	e9dccy1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
Z	WD40	e9dccZ1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
ZA [auth z]	WD40	e9dccz1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
VA [auth v]	WD40	e9dccv1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
T	WD40	e9dccT1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
R	WD40	e9dccR1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
P	WD40	e9dccP1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
J	WD40	e9dccJ1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
IA [auth i]	WD40	e9dcci1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
H	WD40	e9dccH1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
FA [auth f]	WD40	e9dccf1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
E	WD40	e9dccE1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
AA [auth a]	WD40	e9dcca1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	Capsid protein	structural molecule activity	-	viral capsid icosahedral viral capsid virion component T=1 icosahedral viral capsid
AC [auth IA], AD [auth lA], BC [auth KA], BD [auth mA], CC [auth LA], AC [auth IA], AD [auth lA], BC [auth KA], BD [auth mA], CC [auth LA], CD [auth nA], DC [auth MA], DD [auth oA], EC [auth NA], ED [auth pA], FC [auth OA], FD [auth rA], GC [auth PA], GD [auth sA], HC [auth QA], HD [auth tA], IB [auth 0], IC [auth RA], ID [auth uA], JB [auth JA], JC [auth SA], JD [auth vA], KB [auth UA], KC [auth TA], KD [auth wA], LB [auth fA], LC [auth VA], LD [auth xA], MB [auth qA], MC [auth WA], MD [auth yA], NB [auth 1A], NC [auth XA], ND [auth zA], OB [auth 3A], OC [auth YA], OD [auth 0A], PB [auth 4A], PC [auth ZA], PD [auth 2A], QB [auth 5A], QC [auth aA], RB [auth 9], RC [auth bA], SB [auth AA], SC [auth cA], TB [auth BA], TC [auth dA], UB [auth CA], UC [auth eA], VB [auth DA], VC [auth gA], WB [auth EA], WC [auth hA], XB [auth FA], XC [auth iA], YB [auth GA], YC [auth jA], ZB [auth HA], ZC [auth kA]	DNA (5'-D(PAPA)-3')	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	IPR013607	Phospholipase A2-like domain	Domain
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	IPR016184	Capsid/spike protein, ssDNA virus	Homologous Superfamily
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	IPR001403	Coat protein VP1/VP2, Parvovirus	Domain
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	IPR036952	Parvovirus coat protein VP1/VP2	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.