9DC3 | pdb_00009dc3

AAV8 in complex with the AAVX affinity ligand

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
ZA [auth z]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
Z	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
YA [auth y]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
Y	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
XA [auth x]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
X	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
WA [auth w]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
W	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
VA [auth v]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
UA [auth u]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
TA [auth t]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
SA [auth s]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
RA [auth r]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
QA [auth q]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
PA [auth p]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
OA [auth o]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
NA [auth n]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
MA [auth m]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
LA [auth l]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
KA [auth k]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
JA [auth j]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
IA [auth i]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
HB [auth 8]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
HA [auth h]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
GB [auth 7]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
GA [auth g]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
FB [auth 6]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
FA [auth f]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
EB [auth 5]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
EA [auth e]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
DB [auth 4]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
DA [auth d]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
CB [auth 3]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
CA [auth c]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
BB [auth 2]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
BA [auth b]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
AB [auth 1]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
AA [auth a]	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	ssDNA viruses	8071440	3000931	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
ZA [auth z]	WD40	e9dc3z1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
Z	WD40	e9dc3Z1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
YA [auth y]	WD40	e9dc3y1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
Y	WD40	e9dc3Y1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
XA [auth x]	WD40	e9dc3x1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
X	WD40	e9dc3X1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
WA [auth w]	WD40	e9dc3w1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
W	WD40	e9dc3W1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
VA [auth v]	WD40	e9dc3v1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
V	WD40	e9dc3V1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
UA [auth u]	WD40	e9dc3u1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
U	WD40	e9dc3U1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
TA [auth t]	WD40	e9dc3t1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
T	WD40	e9dc3T1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
SA [auth s]	WD40	e9dc3s1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
S	WD40	e9dc3S1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
RA [auth r]	WD40	e9dc3r1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
R	WD40	e9dc3R1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
QA [auth q]	WD40	e9dc3q1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
Q	WD40	e9dc3Q1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
PA [auth p]	WD40	e9dc3p1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
P	WD40	e9dc3P1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
OA [auth o]	WD40	e9dc3o1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
O	WD40	e9dc3O1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
NA [auth n]	WD40	e9dc3n1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
N	WD40	e9dc3N1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
MA [auth m]	WD40	e9dc3m1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
M	WD40	e9dc3M1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
LA [auth l]	WD40	e9dc3l1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
L	WD40	e9dc3L1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
KA [auth k]	WD40	e9dc3k1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
K	WD40	e9dc3K1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
JA [auth j]	WD40	e9dc3j1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
J	WD40	e9dc3J1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
IA [auth i]	WD40	e9dc3i1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
I	WD40	e9dc3I1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
HB [auth 8]	WD40	e9dc381	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
HA [auth h]	WD40	e9dc3h1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
H	WD40	e9dc3H1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
GB [auth 7]	WD40	e9dc371	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
GA [auth g]	WD40	e9dc3g1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
G	WD40	e9dc3G1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
FB [auth 6]	WD40	e9dc361	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
FA [auth f]	WD40	e9dc3f1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
F	WD40	e9dc3F1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
EB [auth 5]	WD40	e9dc351	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
EA [auth e]	WD40	e9dc3e1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
E	WD40	e9dc3E1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
DB [auth 4]	WD40	e9dc341	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
DA [auth d]	WD40	e9dc3d1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
D	WD40	e9dc3D1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
CB [auth 3]	WD40	e9dc331	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
CA [auth c]	WD40	e9dc3c1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
C	WD40	e9dc3C1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
BB [auth 2]	WD40	e9dc321	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
BA [auth b]	WD40	e9dc3b1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
B	WD40	e9dc3B1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
AB [auth 1]	WD40	e9dc311	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
AA [auth a]	WD40	e9dc3a1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
A	WD40	e9dc3A1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
AC [auth S2], AD [auth s2], BC [auth T2], BD [auth t2], CC [auth U2], AC [auth S2], AD [auth s2], BC [auth T2], BD [auth t2], CC [auth U2], CD [auth u2], DC [auth V2], DD [auth v2], EC [auth W2], ED [auth w2], FC [auth X2], FD [auth x2], GC [auth Y2], GD [auth y2], HC [auth Z2], HD [auth z2], IB [auth A2], IC [auth a2], ID [auth 12], JB [auth B2], JC [auth b2], JD [auth 22], KB [auth C2], KC [auth c2], KD [auth 32], LB [auth D2], LC [auth d2], LD [auth 42], MB [auth E2], MC [auth e2], MD [auth 52], NB [auth F2], NC [auth f2], ND [auth 62], OB [auth G2], OC [auth g2], OD [auth 72], PB [auth H2], PC [auth h2], PD [auth 82], QB [auth I2], QC [auth i2], RB [auth J2], RC [auth j2], SB [auth K2], SC [auth k2], TB [auth L2], TC [auth l2], UB [auth M2], UC [auth m2], VB [auth N2], VC [auth n2], WB [auth O2], WC [auth o2], XB [auth P2], XC [auth p2], YB [auth Q2], YC [auth q2], ZB [auth R2], ZC [auth r2]	AAVX affinity ligand	-	-	-
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	Capsid protein	structural molecule activity binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding	-	viral capsid icosahedral viral capsid virion component T=1 icosahedral viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	IPR013607	Phospholipase A2-like domain	Domain
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	IPR016184	Capsid/spike protein, ssDNA virus	Homologous Superfamily
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	IPR001403	Coat protein VP1/VP2, Parvovirus	Domain
A, AA [auth a], AB [auth 1], B, BA [auth b], A, AA [auth a], AB [auth 1], B, BA [auth b], BB [auth 2], C, CA [auth c], CB [auth 3], D, DA [auth d], DB [auth 4], E, EA [auth e], EB [auth 5], F, FA [auth f], FB [auth 6], G, GA [auth g], GB [auth 7], H, HA [auth h], HB [auth 8], I, IA [auth i], J, JA [auth j], K, KA [auth k], L, LA [auth l], M, MA [auth m], N, NA [auth n], O, OA [auth o], P, PA [auth p], Q, QA [auth q], R, RA [auth r], S, SA [auth s], T, TA [auth t], U, UA [auth u], V, VA [auth v], W, WA [auth w], X, XA [auth x], Y, YA [auth y], Z, ZA [auth z]	IPR036952	Parvovirus coat protein VP1/VP2	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.