9CZ2 | pdb_00009cz2

Cryo-EM structure of a nautilus-like HflK/C assembly in complex with FtsH AAA protease

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
BA [auth D]	SCOP2B Superfamily	FtsH N-domain-like	8053578	3002207	SCOP2B (2022-06-29)
CA [auth E]	SCOP2B Superfamily	FtsH N-domain-like	8053578	3002207	SCOP2B (2022-06-29)
DA [auth F]	SCOP2B Superfamily	FtsH N-domain-like	8053578	3002207	SCOP2B (2022-06-29)
EA [auth G]	SCOP2B Superfamily	FtsH N-domain-like	8053578	3002207	SCOP2B (2022-06-29)
GA [auth I]	SCOP2B Superfamily	FtsH N-domain-like	8053578	3002207	SCOP2B (2022-06-29)
HA [auth J]	SCOP2B Superfamily	FtsH N-domain-like	8053578	3002207	SCOP2B (2022-06-29)
IA [auth K]	SCOP2B Superfamily	FtsH N-domain-like	8053578	3002207	SCOP2B (2022-06-29)
JA [auth L]	SCOP2B Superfamily	FtsH N-domain-like	8053578	3002207	SCOP2B (2022-06-29)
Z [auth B]	SCOP2B Superfamily	FtsH N-domain-like	8053578	3002207	SCOP2B (2022-06-29)
Y [auth A]	SCOP2B Superfamily	FtsH N-domain-like	8053578	3002207	SCOP2B (2022-06-29)
FA [auth H]	SCOP2B Superfamily	FtsH N-domain-like	8053578	3002207	SCOP2B (2022-06-29)
AA [auth C]	SCOP2B Superfamily	FtsH N-domain-like	8053578	3002207	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
BA [auth D]	WD40	e9cz2D1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
CA [auth E]	WD40	e9cz2E1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
DA [auth F]	WD40	e9cz2F1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
EA [auth G]	WD40	e9cz2G1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
GA [auth I]	WD40	e9cz2I1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
HA [auth J]	WD40	e9cz2J1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
IA [auth K]	WD40	e9cz2K1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
JA [auth L]	WD40	e9cz2L1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
Z [auth B]	WD40	e9cz2B1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
Y [auth A]	WD40	e9cz2A1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
FA [auth H]	WD40	e9cz2H1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)
AA [auth C]	WD40	e9cz2C1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: WD40	ECOD (v294.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth XA], C [auth XC], E [auth XE], G [auth XG], I [auth XI], A [auth XA], C [auth XC], E [auth XE], G [auth XG], I [auth XI], K [auth XK], M [auth XM], O [auth XO], Q [auth XQ], S [auth XS], U [auth XU], X [auth XW]	PF01145	SPFH domain / Band 7 family (Band_7)	SPFH domain / Band 7 family	This family has been called SPFH [1], Band 7 or PHB domain. Recent phylogenetic analysis has shown this domain to be a slipin or Stomatin-like integral membrane domain conserved from protozoa to mammals.	Domain
B [auth XB], D [auth XD], F [auth XF], H [auth XH], J [auth XJ], B [auth XB], D [auth XD], F [auth XF], H [auth XH], J [auth XJ], L [auth XL], N [auth XN], P [auth XP], R [auth XR], T [auth XT], V [auth XX], W [auth XV]	PF01145	SPFH domain / Band 7 family (Band_7)	SPFH domain / Band 7 family	This family has been called SPFH [1], Band 7 or PHB domain. Recent phylogenetic analysis has shown this domain to be a slipin or Stomatin-like integral membrane domain conserved from protozoa to mammals.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth XA], C [auth XC], E [auth XE], G [auth XG], I [auth XI], A [auth XA], C [auth XC], E [auth XE], G [auth XG], I [auth XI], K [auth XK], M [auth XM], O [auth XO], Q [auth XQ], S [auth XS], U [auth XU], X [auth XW]	Modulator of FtsH protease HflK	-	response to stimulus response to stress response to heat response to abiotic stimulus response to temperature stimulus	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex membrane membrane protein complex cell periphery plasma membrane
AA [auth C], BA [auth D], CA [auth E], DA [auth F], EA [auth G], AA [auth C], BA [auth D], CA [auth E], DA [auth F], EA [auth G], FA [auth H], GA [auth I], HA [auth J], IA [auth K], JA [auth L], Y [auth A], Z [auth B]	ATP-dependent zinc metalloprotease FtsH	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding peptidase activity catalytic activity, acting on a protein metalloendopeptidase activity hydrolase activity metallopeptidase activity catalytic activity endopeptidase activity pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity, acting on acid anhydrides ATP-dependent activity cation binding transition metal ion binding zinc ion binding metal ion binding ATP-dependent peptidase activity	catabolic process metabolic process cellular process primary metabolic process protein catabolic process protein metabolic process macromolecule metabolic process macromolecule catabolic process proteolysis	protein-containing complex cellular anatomical structure membrane membrane protein complex cell periphery plasma membrane
B [auth XB], D [auth XD], F [auth XF], H [auth XH], J [auth XJ], B [auth XB], D [auth XD], F [auth XF], H [auth XH], J [auth XJ], L [auth XL], N [auth XN], P [auth XP], R [auth XR], T [auth XT], V [auth XX], W [auth XV]	Modulator of FtsH protease HflC	-	response to stimulus response to stress response to heat response to abiotic stimulus response to temperature stimulus	protein-containing complex cellular anatomical structure membrane membrane protein complex cell periphery plasma membrane protein complex plasma membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth XA], C [auth XC], E [auth XE], G [auth XG], I [auth XI], A [auth XA], C [auth XC], E [auth XE], G [auth XG], I [auth XI], K [auth XK], M [auth XM], O [auth XO], Q [auth XQ], S [auth XS], U [auth XU], X [auth XW]	IPR036013	Band 7/SPFH domain superfamily	Homologous Superfamily
A [auth XA], C [auth XC], E [auth XE], G [auth XG], I [auth XI], A [auth XA], C [auth XC], E [auth XE], G [auth XG], I [auth XI], K [auth XK], M [auth XM], O [auth XO], Q [auth XQ], S [auth XS], U [auth XU], X [auth XW]	IPR050710	Band 7/mec-2 domain-containing protein	Family
A [auth XA], C [auth XC], E [auth XE], G [auth XG], I [auth XI], A [auth XA], C [auth XC], E [auth XE], G [auth XG], I [auth XI], K [auth XK], M [auth XM], O [auth XO], Q [auth XQ], S [auth XS], U [auth XU], X [auth XW]	IPR001972	Stomatin/HflK family	Family
A [auth XA], C [auth XC], E [auth XE], G [auth XG], I [auth XI], A [auth XA], C [auth XC], E [auth XE], G [auth XG], I [auth XI], K [auth XK], M [auth XM], O [auth XO], Q [auth XQ], S [auth XS], U [auth XU], X [auth XW]	IPR020980	Menbrane protein HflK, N-terminal	Domain
A [auth XA], C [auth XC], E [auth XE], G [auth XG], I [auth XI], A [auth XA], C [auth XC], E [auth XE], G [auth XG], I [auth XI], K [auth XK], M [auth XM], O [auth XO], Q [auth XQ], S [auth XS], U [auth XU], X [auth XW]	IPR001107	Band 7 domain	Domain
A [auth XA], C [auth XC], E [auth XE], G [auth XG], I [auth XI], A [auth XA], C [auth XC], E [auth XE], G [auth XG], I [auth XI], K [auth XK], M [auth XM], O [auth XO], Q [auth XQ], S [auth XS], U [auth XU], X [auth XW]	IPR010201	HflK	Family
AA [auth C], BA [auth D], CA [auth E], DA [auth F], EA [auth G], AA [auth C], BA [auth D], CA [auth E], DA [auth F], EA [auth G], FA [auth H], GA [auth I], HA [auth J], IA [auth K], JA [auth L], Y [auth A], Z [auth B]	IPR000642	Peptidase M41	Domain
AA [auth C], BA [auth D], CA [auth E], DA [auth F], EA [auth G], AA [auth C], BA [auth D], CA [auth E], DA [auth F], EA [auth G], FA [auth H], GA [auth I], HA [auth J], IA [auth K], JA [auth L], Y [auth A], Z [auth B]	IPR037219	Peptidase M41-like	Homologous Superfamily
AA [auth C], BA [auth D], CA [auth E], DA [auth F], EA [auth G], AA [auth C], BA [auth D], CA [auth E], DA [auth F], EA [auth G], FA [auth H], GA [auth I], HA [auth J], IA [auth K], JA [auth L], Y [auth A], Z [auth B]	IPR041569	AAA ATPase, AAA+ lid domain	Domain
AA [auth C], BA [auth D], CA [auth E], DA [auth F], EA [auth G], AA [auth C], BA [auth D], CA [auth E], DA [auth F], EA [auth G], FA [auth H], GA [auth I], HA [auth J], IA [auth K], JA [auth L], Y [auth A], Z [auth B]	IPR011546	Peptidase M41, FtsH extracellular	Domain
AA [auth C], BA [auth D], CA [auth E], DA [auth F], EA [auth G], AA [auth C], BA [auth D], CA [auth E], DA [auth F], EA [auth G], FA [auth H], GA [auth I], HA [auth J], IA [auth K], JA [auth L], Y [auth A], Z [auth B]	IPR003960	ATPase, AAA-type, conserved site	Conserved Site
AA [auth C], BA [auth D], CA [auth E], DA [auth F], EA [auth G], AA [auth C], BA [auth D], CA [auth E], DA [auth F], EA [auth G], FA [auth H], GA [auth I], HA [auth J], IA [auth K], JA [auth L], Y [auth A], Z [auth B]	IPR003593	AAA+ ATPase domain	Domain
AA [auth C], BA [auth D], CA [auth E], DA [auth F], EA [auth G], AA [auth C], BA [auth D], CA [auth E], DA [auth F], EA [auth G], FA [auth H], GA [auth I], HA [auth J], IA [auth K], JA [auth L], Y [auth A], Z [auth B]	IPR005936	ATP-dependent zinc metalloprotease, FtsH	Family
AA [auth C], BA [auth D], CA [auth E], DA [auth F], EA [auth G], AA [auth C], BA [auth D], CA [auth E], DA [auth F], EA [auth G], FA [auth H], GA [auth I], HA [auth J], IA [auth K], JA [auth L], Y [auth A], Z [auth B]	IPR003959	ATPase, AAA-type, core	Domain
AA [auth C], BA [auth D], CA [auth E], DA [auth F], EA [auth G], AA [auth C], BA [auth D], CA [auth E], DA [auth F], EA [auth G], FA [auth H], GA [auth I], HA [auth J], IA [auth K], JA [auth L], Y [auth A], Z [auth B]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
B [auth XB], D [auth XD], F [auth XF], H [auth XH], J [auth XJ], B [auth XB], D [auth XD], F [auth XF], H [auth XH], J [auth XJ], L [auth XL], N [auth XN], P [auth XP], R [auth XR], T [auth XT], V [auth XX], W [auth XV]	IPR036013	Band 7/SPFH domain superfamily	Homologous Superfamily
B [auth XB], D [auth XD], F [auth XF], H [auth XH], J [auth XJ], B [auth XB], D [auth XD], F [auth XF], H [auth XH], J [auth XJ], L [auth XL], N [auth XN], P [auth XP], R [auth XR], T [auth XT], V [auth XX], W [auth XV]	IPR001107	Band 7 domain	Domain
B [auth XB], D [auth XD], F [auth XF], H [auth XH], J [auth XJ], B [auth XB], D [auth XD], F [auth XF], H [auth XH], J [auth XJ], L [auth XL], N [auth XN], P [auth XP], R [auth XR], T [auth XT], V [auth XX], W [auth XV]	IPR010200	HflC	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.