9BKD

The structure of human Pdcd4 bound to the 40S small ribosomal subunit


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth S]PF01092Ribosomal protein S6e (Ribosomal_S6e)Ribosomal protein S6e- Family
J [auth I]PF00253Ribosomal protein S14p/S29e (Ribosomal_S14)Ribosomal protein S14p/S29e- Family
J [auth I]PF00312Ribosomal protein S15 (Ribosomal_S15)Ribosomal protein S15- Domain
K [auth 9]PF05162Ribosomal protein L41 (Ribosomal_L41)Ribosomal protein L41- Family
L [auth A]PF03501Plectin/S10 domain (S10_plectin)Plectin/S10 domainThis presumed domain is found at the N-terminus of some isoforms of the cytoskeletal muscle protein plectin as well as the ribosomal S10 protein. This domain may be involved in RNA binding.Domain
M [auth B]PF16205Ribosomal_S17 N-terminal (Ribosomal_S17_N)Ribosomal_S17 N-terminal- Family
M [auth B]PF00366Ribosomal protein S17 (Ribosomal_S17)Ribosomal protein S17- Domain
M [auth B]PF00203Ribosomal protein S19 (Ribosomal_S19)Ribosomal protein S19- Domain
N [auth C]PF00900Ribosomal family S4e (Ribosomal_S4e)Ribosomal family S4e- Family
N [auth C]PF1612140S ribosomal protein S4 C-terminus (40S_S4_C)40S ribosomal protein S4 C-terminus- Family
N [auth C]PF08071RS4NT (NUC023) domain (RS4NT)RS4NT (NUC023) domainThis is the N-terminal domain of Ribosomal S4 / S4e proteins. This domain is associated with S4 and KOW domains [1].Domain
N [auth C]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
N [auth C]PF00467KOW motif (KOW)KOW motif- Family
O [auth D]PF01090Ribosomal protein S19e (Ribosomal_S19e)Ribosomal protein S19e- Family
O [auth D]PF00163Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4)Ribosomal protein S4/S9 N-terminal domain- Family
O [auth D]PF01479S4 domain (S4)S4 domainThe S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ...The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast protein containing a pseudouridine synthetase and a deaminase domain, bacterial tyrosyl-tRNA synthetases, and a number of uncharacterized, small proteins that may be involved in translation regulation [1]. The S4 domain probably mediates binding to RNA.
Domain
P [auth E]PF00164Ribosomal protein S12/S23 (Ribosom_S12_S23)Ribosomal protein S12/S23- Family
R [auth J]PF00410Ribosomal protein S8 (Ribosomal_S8)Ribosomal protein S8- Domain
S [auth R]PF01201Ribosomal protein S8e (Ribosomal_S8e)Ribosomal protein S8e- Family
PF01282Ribosomal protein S24e (Ribosomal_S24e)Ribosomal protein S24e- Family
U [auth V]PF00177Ribosomal protein S7p/S5e (Ribosomal_S7)Ribosomal protein S7p/S5eThis family contains ribosomal protein S7 from prokaryotes and S5 from eukaryotes.Domain
V [auth Y]PF00380Ribosomal protein S9/S16 (Ribosomal_S9)Ribosomal protein S9/S16- Family
W [auth Z]PF07650KH domain (KH_2)KH domain- Domain
W [auth Z]PF00189Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C)Ribosomal protein S3, C-terminal domainThis family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer.Domain
C [auth H]PF01667Ribosomal protein S27 (Ribosomal_S27e)Ribosomal protein S27- Family
C [auth H]PF00338Ribosomal protein S10p/S20e (Ribosomal_S10)Ribosomal protein S10p/S20eThis family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes.Domain
HA [auth M]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
D [auth K]PF01249Ribosomal protein S21e (Ribosomal_S21e)Ribosomal protein S21e- Family
E [auth L]PF03719Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C)Ribosomal protein S5, C-terminal domain- Domain
E [auth L]PF00333Ribosomal protein S5, N-terminal domain (Ribosomal_S5)Ribosomal protein S5, N-terminal domain- Domain
G [auth N]PF00318Ribosomal protein S2 (Ribosomal_S2)Ribosomal protein S2- Family
G [auth N]PF1612240S ribosomal protein SA C-terminus (40S_SA_C)40S ribosomal protein SA C-terminus- Family
G [auth N]PF01200Ribosomal protein S28e (Ribosomal_S28e)Ribosomal protein S28e- Family
I [auth P]PF00411Ribosomal protein S11 (Ribosomal_S11)Ribosomal protein S11- Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth S]Small ribosomal subunit protein eS6
J [auth I]40S ribosomal protein S13
K [auth 9]60S ribosomal protein L41
L [auth A]18S rRNA---
M [auth B]Small ribosomal subunit protein uS17
N [auth C]Small ribosomal subunit protein eS4, X isoform
O [auth D]Small ribosomal subunit protein uS4
P [auth E]Small ribosomal subunit protein uS12
Q [auth F]Small ribosomal subunit protein eS30
R [auth J]40S ribosomal protein S15a
S [auth R]Small ribosomal subunit protein eS8
B [auth G]Small ribosomal subunit protein eS7
Small ribosomal subunit protein eS24
U [auth V]40S ribosomal protein S5
V [auth Y]40S ribosomal protein S16
W [auth Z]Small ribosomal subunit protein uS3
X [auth a]Small ribosomal subunit protein eS10
Y [auth b]40S ribosomal protein S15
Z [auth c]Receptor of activated protein C kinase 1
AA [auth d]40S ribosomal protein S19
BA [auth e]Small ribosomal subunit protein eS25
CA [auth f]Small ribosomal subunit protein uS13
C [auth H]40S ribosomal protein S27
DA [auth i]40S ribosomal protein S29
EA [auth k]Ubiquitin-40S ribosomal protein S27a
FA [auth m]40S ribosomal protein S12
GA [auth n]40S ribosomal protein S28
HA [auth M]40S ribosomal protein S17
IA [auth h]40S ribosomal protein S20
JA [auth U]Programmed cell death protein 4
D [auth K]40S ribosomal protein S21
E [auth L]40S ribosomal protein S2
F [auth O]40S ribosomal protein S3a
G [auth N]Small ribosomal subunit protein uS2
H [auth Q]40S ribosomal protein S26
I [auth P]40S ribosomal protein S14

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth S]IPR018282Small ribosomal subunit protein eS6, conserved siteConserved Site
A [auth S]IPR001377Small ribosomal subunit protein eS6Family
A [auth S]IPR014401Small ribosomal subunit protein eS6-likeFamily
J [auth I]IPR009068uS15/NS1, RNA-binding domain superfamilyHomologous Superfamily
J [auth I]IPR000589Small ribosomal subunit protein uS15Family
J [auth I]IPR023029Small ribosomal subunit protein uS15, archaea/eukaryotesFamily
J [auth I]IPR012606Small ribosomal subunit protein uS15, N-terminalDomain
K [auth 9]IPR007836Large ribosomal subunit protein eS32Family
M [auth B]IPR019979Small ribosomal subunit protein uS17, conserved siteConserved Site
M [auth B]IPR032440Small ribosomal subunit protein uS17, N-terminalDomain
M [auth B]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
M [auth B]IPR000266Small ribosomal subunit protein uS17Family
M [auth B]IPR028333Small ribosomal subunit protein uS17, archaeal/eukaryoticFamily
N [auth C]IPR013843Small ribosomal subunit protein eS4, N-terminalDomain
N [auth C]IPR032277Small ribosomal subunit protein eS4, C-terminal domainDomain
N [auth C]IPR013845Small ribosomal subunit protein eS4, central regionDomain
N [auth C]IPR014722Large ribosomal subunit protein uL2, domain 2Homologous Superfamily
N [auth C]IPR041982Small ribosomal subunit protein eS4, KOW domainDomain
N [auth C]IPR018199Small ribosomal subunit protein eS4, N-terminal, conserved siteConserved Site
N [auth C]IPR002942RNA-binding S4 domainDomain
N [auth C]IPR000876Small ribosomal subunit protein eS4Family
N [auth C]IPR038237Small ribosomal subunit protein eS4, central domain superfamilyHomologous Superfamily
N [auth C]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
N [auth C]IPR005824KOWDomain
O [auth D]IPR002942RNA-binding S4 domainDomain
O [auth D]IPR022801Small ribosomal subunit protein uS4Family
O [auth D]IPR018079Small ribosomal subunit protein uS4, conserved siteConserved Site
O [auth D]IPR001912Small ribosomal subunit protein uS4, N-terminalDomain
O [auth D]IPR005710Small ribosomal subunit protein uS4, eukaryotic/archaealFamily
O [auth D]IPR036986RNA-binding S4 domain superfamilyHomologous Superfamily
P [auth E]IPR006032Small ribosomal subunit protein uS12Family
P [auth E]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
P [auth E]IPR005680Small ribosomal subunit protein uS12, eukaryotic/archaealFamily
Q [auth F]IPR019954Ubiquitin conserved siteConserved Site
Q [auth F]IPR000626Ubiquitin-like domainDomain
Q [auth F]IPR006846Small ribosomal subunit protein eS30Family
Q [auth F]IPR039415Ubiquitin-like protein FUBIDomain
Q [auth F]IPR019956Ubiquitin domainDomain
Q [auth F]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
R [auth J]IPR047863Small ribosomal subunit protein uS8, conserved siteConserved Site
R [auth J]IPR000630Small ribosomal subunit protein uS8Family
R [auth J]IPR035987Small ribosomal subunit protein uS8 superfamilyHomologous Superfamily
S [auth R]IPR042563Small ribosomal subunit protein eS8 subdomain, eukaryotesHomologous Superfamily
S [auth R]IPR022309Ribosomal protein eS8/ribosomal biogenesis NSA2Family
S [auth R]IPR018283Small ribosomal subunit protein eS8, conserved siteConserved Site
S [auth R]IPR001047Small ribosomal subunit protein eS8Family
B [auth G]IPR000554Small ribosomal subunit protein eS7Family
B [auth G]IPR047861Small ribosomal subunit protein eS7, conserved siteConserved Site
IPR053709Eukaryotic Ribosomal Protein eS24Homologous Superfamily
IPR001976Small ribosomal subunit protein eS24Family
IPR012678Ribosomal protein uL23/eL15/eS24 core domain superfamilyHomologous Superfamily
IPR018098Small ribosomal subunit protein eS24 conserved siteConserved Site
U [auth V]IPR023798Small ribosomal subunit protein uS7 domainDomain
U [auth V]IPR020606Small ribosomal subunit protein uS7, conserved siteConserved Site
U [auth V]IPR036823Small ribosomal subunit protein uS7 domain superfamilyHomologous Superfamily
U [auth V]IPR000235Small ribosomal subunit protein uS7Family
U [auth V]IPR005716Ribosomal protein uS7, eukaryotic/archaealFamily
V [auth Y]IPR020574Small ribosomal subunit protein uS9, conserved siteConserved Site
V [auth Y]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
V [auth Y]IPR000754Small ribosomal subunit protein uS9Family
V [auth Y]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
W [auth Z]IPR009019K homology domain superfamily, prokaryotic typeHomologous Superfamily
W [auth Z]IPR015946K homology domain-like, alpha/betaHomologous Superfamily
W [auth Z]IPR036419Ribosomal protein S3, C-terminal domain superfamilyHomologous Superfamily
W [auth Z]IPR004044K Homology domain, type 2Domain
W [auth Z]IPR001351Small ribosomal subunit protein uS3, C-terminalDomain
W [auth Z]IPR005703Small ribosomal subunit protein uS3, eukaryotic/archaealFamily
W [auth Z]IPR018280Small ribosomal subunit protein uS3, conserved siteConserved Site
X [auth a]IPR037447Small ribosomal subunit protein eS10Family
X [auth a]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
X [auth a]IPR005326Plectin/eS10, N-terminalDomain
Y [auth b]IPR023575Small ribosomal subunit protein uS19, superfamilyHomologous Superfamily
Y [auth b]IPR020934Small ribosomal subunit protein uS19, conserved siteConserved Site
Y [auth b]IPR005713Small ribosomal subunit protein uS19, eukaryotic/archaealFamily
Y [auth b]IPR002222Small ribosomal subunit protein uS19Family
Z [auth c]IPR019775WD40 repeat, conserved siteConserved Site
Z [auth c]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
Z [auth c]IPR045223Small ribosomal subunit protein RACK1-likeFamily
Z [auth c]IPR020472G-protein beta WD-40 repeatRepeat
Z [auth c]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
Z [auth c]IPR001680WD40 repeatRepeat
AA [auth d]IPR018277Small ribosomal subunit protein eS19, conserved siteConserved Site
AA [auth d]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
AA [auth d]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
AA [auth d]IPR001266Small ribosomal subunit protein eS19Family
BA [auth e]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
BA [auth e]IPR004977Small ribosomal subunit protein eS25Family
CA [auth f]IPR018269Small ribosomal subunit protein uS13, conserved siteConserved Site
CA [auth f]IPR027437Small ribosomal subunit protein uS13, C-terminalHomologous Superfamily
CA [auth f]IPR001892Small ribosomal subunit protein uS13Family
CA [auth f]IPR010979Small ribosomal subunit protein uS13-like, H2THHomologous Superfamily
C [auth H]IPR023407Small ribosomal subunit protein eS27, zinc-binding domain superfamilyHomologous Superfamily
C [auth H]IPR000592Small ribosomal subunit protein eS27Family
C [auth H]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
DA [auth i]IPR018271Small ribosomal subunit protein uS14, conserved siteConserved Site
DA [auth i]IPR043140Small ribosomal subunit protein uS14 superfamilyHomologous Superfamily
DA [auth i]IPR001209Small ribosomal subunit protein uS14Family
DA [auth i]IPR039744Small ribosomal subunit protein uS14, eukaryotes/archaeaFamily
EA [auth k]IPR019954Ubiquitin conserved siteConserved Site
EA [auth k]IPR050158Ubiquitin and ubiquitin-likeFamily
EA [auth k]IPR011332Zinc-binding ribosomal proteinHomologous Superfamily
EA [auth k]IPR000626Ubiquitin-like domainDomain
EA [auth k]IPR038582Small ribosomal subunit protein eS31 eukaryotic-type superfamilyHomologous Superfamily
EA [auth k]IPR002906Small ribosomal subunit protein eS31Domain
EA [auth k]IPR019956Ubiquitin domainDomain
EA [auth k]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
FA [auth m]IPR000530Small ribosomal subunit protein eS12Family
FA [auth m]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
FA [auth m]IPR047860Small ribosomal subunit protein eS12, conserved siteConserved Site
FA [auth m]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
GA [auth n]IPR028626Ribosomal protein eS28 conserved siteConserved Site
GA [auth n]IPR012340Nucleic acid-binding, OB-foldHomologous Superfamily
GA [auth n]IPR000289Small ribosomal subunit protein eS28Family
HA [auth M]IPR001210Small ribosomal subunit protein eS17Family
HA [auth M]IPR036401Small ribosomal subunit protein eS17 superfamilyHomologous Superfamily
HA [auth M]IPR018273Small ribosomal subunit protein eS17, conserved siteConserved Site
IA [auth h]IPR027486Small ribosomal subunit protein uS10 domainDomain
IA [auth h]IPR036838Small ribosomal subunit protein uS10 domain superfamilyHomologous Superfamily
IA [auth h]IPR005729Small ribosomal subunit protein uS10, eukaryotic/archaealFamily
IA [auth h]IPR018268Small ribosomal subunit protein uS10, conserved siteConserved Site
IA [auth h]IPR001848Small ribosomal subunit protein uS10Family
JA [auth U]IPR016024Armadillo-type foldHomologous Superfamily
JA [auth U]IPR039778Programmed cell death protein 4Family
JA [auth U]IPR003891Initiation factor eIF-4 gamma, MA3Domain
D [auth K]IPR038579Small ribosomal subunit protein eS21 superfamilyHomologous Superfamily
D [auth K]IPR018279Small ribosomal subunit protein eS21, conserved siteConserved Site
D [auth K]IPR001931Small ribosomal subunit protein eS21Family
E [auth L]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
E [auth L]IPR018192Small ribosomal subunit protein uS5, N-terminal, conserved siteConserved Site
E [auth L]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
E [auth L]IPR000851Small ribosomal subunit protein uS5Family
E [auth L]IPR005711Small ribosomal subunit protein uS5, eukaryotic/archaealFamily
E [auth L]IPR005324Small ribosomal subunit protein uS5, C-terminalDomain
E [auth L]IPR013810Small ribosomal subunit protein uS5, N-terminalDomain
F [auth O]IPR001593Small ribosomal subunit protein eS1Family
F [auth O]IPR018281Small ribosomal subunit protein eS1, conserved siteConserved Site
F [auth O]IPR027500Small ribosomal subunit protein eS1, eukaryotesFamily
G [auth N]IPR023591Small ribosomal subunit protein uS2, flavodoxin-like domain superfamilyHomologous Superfamily
G [auth N]IPR001865Small ribosomal subunit protein uS2Family
G [auth N]IPR032281Small ribosomal subunit protein uS2, C-terminal domainDomain
G [auth N]IPR027504Small ribosomal subunit protein uS2, vertebratesFamily
G [auth N]IPR005707Small ribosomal subunit protein uS2, eukaryotic/archaealFamily
G [auth N]IPR018130Small ribosomal subunit protein uS2, conserved siteConserved Site
G [auth N]IPR027498Small ribosomal subunit protein uS2, eukaryoticFamily
H [auth Q]IPR047864Ribosomal protein eS26, conserved siteConserved Site
H [auth Q]IPR038551Ribosomal protein eS26 superfamilyHomologous Superfamily
H [auth Q]IPR000892Small ribosomal subunit protein eS26Family
I [auth P]IPR036967Small ribosomal subunit protein uS11 superfamilyHomologous Superfamily
I [auth P]IPR018102Small ribosomal subunit protein uS11, conserved siteConserved Site
I [auth P]IPR001971Small ribosomal subunit protein uS11Family

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A [auth S]PharosP62753
J [auth I]PharosP62277
K [auth 9]PharosP62945
M [auth B]PharosP62280
N [auth C]PharosP62701
O [auth D]PharosP46781
P [auth E]PharosP62266
Q [auth F]PharosP62861
R [auth J]PharosP62244
S [auth R]PharosP62241
B [auth G]PharosP62081
PharosP62847
U [auth V]PharosP46782
V [auth Y]PharosP62249
W [auth Z]PharosP23396
X [auth a]PharosP46783
Y [auth b]PharosP62841
Z [auth c]PharosP63244
AA [auth d]PharosP39019
BA [auth e]PharosP62851
CA [auth f]PharosP62269
C [auth H]PharosP42677
DA [auth i]PharosP62273
EA [auth k]PharosP62979
FA [auth m]PharosP25398
GA [auth n]PharosP62857
HA [auth M]PharosP08708
IA [auth h]PharosP60866
JA [auth U]PharosQ53EL6
D [auth K]PharosP63220
E [auth L]PharosP15880
G [auth N]PharosP08865
H [auth Q]PharosP62854
I [auth P]PharosP62263