9BIR

Cryo-EM structure of the mammalian peptide transporter PepT2 bound to cefadroxil

External Resource: Annotation

SAbDab Antibody Annotation
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

SAbDab Antibody Annotation SAbDab Database Homepage

Chain	Chain Class	Chain Subclass	Chain Type	Antigen Name(s)	Provenance Source
B	Heavy Chain	IGHV1	-	solute carrier family 15 member 2	SAbDab (2024-10-04)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00854	POT family (PTR2)	POT family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Solute carrier family 15 member 2	dipeptide transmembrane transporter activity oligopeptide transmembrane transporter activity amide transmembrane transporter activity transporter activity transmembrane transporter activity tripeptide transmembrane transporter activity high-affinity oligopeptide transmembrane transporter activity monoatomic cation transmembrane transporter activity proton transmembrane transporter activity solute:monoatomic cation symporter activity peptide transmembrane transporter activity peptide:proton symporter activity secondary active transmembrane transporter activity active monoatomic ion transmembrane transporter activity dipeptide transmembrane transporter activity oligopeptide transmembrane transporter activity amide transmembrane transporter activity transporter activity transmembrane transporter activity tripeptide transmembrane transporter activity high-affinity oligopeptide transmembrane transporter activity monoatomic cation transmembrane transporter activity proton transmembrane transporter activity solute:monoatomic cation symporter activity peptide transmembrane transporter activity peptide:proton symporter activity secondary active transmembrane transporter activity active monoatomic ion transmembrane transporter activity active transmembrane transporter activity inorganic molecular entity transmembrane transporter activity solute:proton symporter activity inorganic cation transmembrane transporter activity monoatomic ion transmembrane transporter activity symporter activity	protein localization establishment of protein localization cellular localization nitrogen compound transport transport establishment of localization localization protein transport cellular macromolecule localization macromolecule localization cellular process xenobiotic transport cellular response to stimulus positive regulation of response to biotic stimulus protein localization establishment of protein localization cellular localization nitrogen compound transport transport establishment of localization localization protein transport cellular macromolecule localization macromolecule localization cellular process xenobiotic transport cellular response to stimulus positive regulation of response to biotic stimulus regulation of cellular process pattern recognition receptor signaling pathway response to stimulus regulation of signal transduction response to biotic stimulus intracellular signal transduction cell communication immune response-activating signaling pathway positive regulation of immune response regulation of immune system process signal transduction positive regulation of immune system process innate immune response-activating signaling pathway regulation of biological process immune response response to other organism regulation of innate immune response response to external stimulus regulation of response to stimulus defense response to other organism regulation of pattern recognition receptor signaling pathway positive regulation of defense response activation of innate immune response regulation of immune response activation of immune response cytoplasmic pattern recognition receptor signaling pathway regulation of defense response regulation of response to biotic stimulus biological process involved in interspecies interaction between organisms regulation of response to external stimulus intracellular receptor signaling pathway signaling positive regulation of biological process regulation of cytoplasmic pattern recognition receptor signaling pathway positive regulation of response to stimulus positive regulation of response to external stimulus immune response-regulating signaling pathway regulation of intracellular signal transduction regulation of response to stress response to stress innate immune response response to external biotic stimulus nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway regulation of signaling positive regulation of innate immune response defense response regulation of nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway biological regulation defense response to symbiont immune system process regulation of cell communication dipeptide transport amide transport oligopeptide transport peptidoglycan transport carbohydrate derivative transport multicellular organismal process kidney epithelium development metanephric proximal tubule development nephron tubule development metanephric epithelium development renal system development multicellular organism development metanephros development renal tubule development anatomical structure development nephron development metanephric nephron epithelium development system development nephron epithelium development developmental process epithelium development proximal tubule development tube development metanephric nephron tubule development animal organ development tissue development metanephric tubule development kidney development import into cell import across plasma membrane transmembrane transport oligopeptide transmembrane transport oligopeptide import across plasma membrane dipeptide transmembrane transport dipeptide import across plasma membrane renal system process system process renal absorption tripeptide transmembrane transport tripeptide transport tripeptide import across plasma membrane peptide transport antibacterial innate immune response defense response to bacterium response to bacterium	membrane cellular anatomical entity cell periphery apical part of cell plasma membrane plasma membrane region apical plasma membrane membrane-bounded organelle intracellular anatomical structure intracellular vesicle phagocytic vesicle intracellular membrane-bounded organelle intracellular organelle phagocytic vesicle membrane membrane cellular anatomical entity cell periphery apical part of cell plasma membrane plasma membrane region apical plasma membrane membrane-bounded organelle intracellular anatomical structure intracellular vesicle phagocytic vesicle intracellular membrane-bounded organelle intracellular organelle phagocytic vesicle membrane cytoplasmic vesicle membrane bounding membrane of organelle cytoplasmic vesicle vesicle membrane organelle endocytic vesicle membrane cytoplasm vesicle organelle membrane endocytic vesicle
B	nanobody	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR029028	Alpha/beta knot methyltransferases	Homologous Superfamily
A	IPR004768	Oligopeptide transporter	Family
A	IPR000109	Proton-dependent oligopeptide transporter family	Family
A	IPR018456	PTR2 family proton/oligopeptide symporter, conserved site	Conserved Site
A	IPR036259	MFS transporter superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.