9B8O

Synaptic Vesicle V-ATPase with synaptophysin and SidK, State 3, Vo


Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth H]PF00137ATP synthase subunit C (ATP-synt_C)ATP synthase subunit CThis domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4].Domain
S [auth L]PF00137ATP synthase subunit C (ATP-synt_C)ATP synthase subunit CThis domain is found in the subunit c of ATP synthases and similar sequences from all cellular organisms. It forms two alpha-helices [1-4].Domain
B [auth P]PF05827V-type proton ATPase subunit S1, luminal domain (VAS1_LD)V-type proton ATPase subunit S1, luminal domainThis entry represents the luminal domain (LD) found in eukaryotic V-type proton ATPase subunit S1 involved in V-ATPase V0 assembly, including Ac45 subunit (ATP6AP1) [1,2]. This domain folds as a globular beta-prism structure which is structurally sim ...This entry represents the luminal domain (LD) found in eukaryotic V-type proton ATPase subunit S1 involved in V-ATPase V0 assembly, including Ac45 subunit (ATP6AP1) [1,2]. This domain folds as a globular beta-prism structure which is structurally similar to LAMP1-3, thus, the LD domain of Ac45 is an evolutionarily conserved member of the LAMP family [2]. Ac45 is an ER membrane protein that guides the V-type ATPase into specialised subcellular compartments [3] and is critical for Vo complex assembly as it connects to multiple Vo subunits and phospholipids in the c-ring [2]. Missense mutations in the X-linked ATP6AP1 gene cause immunodeficiency in males that leads to recurrent bacterial infection, hepatopathy, cognitive impairment, and abnormal protein glycosylation [2].
Domain
B [auth P]PF20520V0 complex accessory subunit Ac45/VOA1 transmembrane domain (Ac45-VOA1_TM)V0 complex accessory subunit Ac45/VOA1 transmembrane domainThis entry represents the transmembrane domain from ER/Golgi membrane proteins including V0 complex accessory subunit Ac45 (ATP6AP1, also known as V-type proton ATPase subunit S1) from animals and the yeast homologue V0 assembly protein 1 (VOA1) whic ...This entry represents the transmembrane domain from ER/Golgi membrane proteins including V0 complex accessory subunit Ac45 (ATP6AP1, also known as V-type proton ATPase subunit S1) from animals and the yeast homologue V0 assembly protein 1 (VOA1) which are essential for V0 ATPase assembly, stability and function [1,2]. In humans, mutations of ATP6AP1 cause immunodeficiency with hypogammaglobulinemia, hepatopathy and neurocognitive abnormalities [3]. This entry also includes ER membrane BIG1 proteins from yeast, involved in cell wall biogenesis.
Domain
C [auth U]PF01284Membrane-associating domain (MARVEL)Membrane-associating domainMARVEL domain-containing proteins are often found in lipid-associating proteins - such as Occludin and MAL family proteins [1]. It may be part of the machinery of membrane apposition events, such as transport vesicle biogenesis.Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth H]ATPase H+-transporting V1 subunit D
R [auth p]Renin receptor
S [auth L]V-type proton ATPase subunit F
B [auth P]V-type proton ATPase subunit S1
C [auth U]Synaptophysin
D [auth a]V-type proton ATPase 116 kDa subunit a 1
E [auth b]ATPase, H+ transporting, V0 subunit B (Predicted), isoform CRA_a -
F [auth d]V-type proton ATPase subunit
G [auth e]V-type proton ATPase subunit e 2
H [auth f]Rnasek protein
V-type proton ATPase 16 kDa proteolipid subunit c

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth H]IPR002699ATPase, V1 complex, subunit DFamily
R [auth p]IPR012493Renin receptor-likeFamily
S [auth L]IPR005772ATPase, V1 complex, subunit F, eukaryoticFamily
S [auth L]IPR036906ATPase, V1 complex, subunit F superfamilyHomologous Superfamily
S [auth L]IPR008218ATPase, V1 complex, subunit FFamily
B [auth P]IPR046755V-type proton ATPase subunit S1, luminal domainDomain
B [auth P]IPR008388V0 complex accessory subunit Ac45Family
B [auth P]IPR046756V-type proton ATPase subunit S1/VOA1, transmembrane domainDomain
C [auth U]IPR001285Synaptophysin/synaptoporinFamily
C [auth U]IPR008253Marvel domainDomain
D [auth a]IPR026028ATPase, V0 complex, subunit 116kDa, eukaryoticFamily
D [auth a]IPR002490V-type ATPase, V0 complex, 116kDa subunit familyFamily
E [auth b]IPR035921F/V-ATP synthase subunit C superfamilyHomologous Superfamily
E [auth b]IPR000245V-ATPase proteolipid subunitFamily
E [auth b]IPR002379V-ATPase proteolipid subunit C-like domainDomain
F [auth d]IPR036079V-type ATP synthase subunit c/d subunit superfamilyHomologous Superfamily
F [auth d]IPR035067V-type ATPase subunit C/dHomologous Superfamily
F [auth d]IPR044911V-type ATP synthase c/d subunit, domain 3 superfamilyHomologous Superfamily
F [auth d]IPR002843ATPase, V0 complex, c/d subunitFamily
F [auth d]IPR016727ATPase, V0 complex, subunit dFamily
G [auth e]IPR017385ATPase, V0 complex, subunit e1/e2, metazoaFamily
G [auth e]IPR008389ATPase, V0 complex, subunit e1/e2Family
H [auth f]IPR026770Ribonuclease kappaFamily
IPR035921F/V-ATP synthase subunit C superfamilyHomologous Superfamily
IPR002379V-ATPase proteolipid subunit C-like domainDomain
IPR011555V-ATPase proteolipid subunit C, eukaryoticFamily
IPR000245V-ATPase proteolipid subunitFamily