8V41 | pdb_00008v41

CryoEM Structure of Diffocin - postcontracted - Baseplate - transitional state

External Resource: Annotation

Domain Annotation: ECOD Classification
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
X [auth G]	V-set	e8v41G1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
W [auth I]	V-set	e8v41I1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
T [auth W]	V-set	e8v41W1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
Q [auth T]	V-set	e8v41T1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
P [auth g]	V-set	e8v41g1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
OA [auth b]	V-set	e8v41b1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
M [auth V]	V-set	e8v41V1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
LA [auth a]	V-set	e8v41a1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
KA [auth c]	V-set	e8v41c1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
J [auth S]	V-set	e8v41S1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
I [auth f]	V-set	e8v41f1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
HA [auth X]	V-set	e8v41X1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
F [auth D]	V-set	e8v41D1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
EA [auth U]	V-set	e8v41U1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
DA [auth h]	V-set	e8v41h1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
C	V-set	e8v41C1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
B [auth P]	V-set	e8v41P1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)
AA [auth H]	V-set	e8v41H1	A: alpha arrays	X: HTH	H: HTH	T: Three-helical HTH	F: V-set	ECOD (v295)

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
BA [auth E], G [auth A], IA [auth N], N [auth L], PA [auth Y], BA [auth E], G [auth A], IA [auth N], N [auth L], PA [auth Y], U [auth M]	IPR018755	Bacteriophage Mu-like, Gp48	Family
E [auth j], GA [auth l], L [auth i], NA [auth d], S [auth k], E [auth j], GA [auth l], L [auth i], NA [auth d], S [auth k], Z [auth J]	IPR020288	Contractile injection system sheath initiator	Family
AA [auth H], B [auth P], C, DA [auth h], EA [auth U], AA [auth H], B [auth P], C, DA [auth h], EA [auth U], F [auth D], HA [auth X], I [auth f], J [auth S], KA [auth c], LA [auth a], M [auth V], OA [auth b], P [auth g], Q [auth T], T [auth W], W [auth I], X [auth G]	IPR020287	Tail sheath protein, C-terminal domain	Domain
AA [auth H], B [auth P], C, DA [auth h], EA [auth U], AA [auth H], B [auth P], C, DA [auth h], EA [auth U], F [auth D], HA [auth X], I [auth f], J [auth S], KA [auth c], LA [auth a], M [auth V], OA [auth b], P [auth g], Q [auth T], T [auth W], W [auth I], X [auth G]	IPR035089	Tail sheath protein, subtilisin-like domain	Domain
A [auth B], CA [auth R], D [auth v], FA [auth o], H [auth O], A [auth B], CA [auth R], D [auth v], FA [auth o], H [auth O], JA [auth Z], K [auth m], MA [auth e], O [auth Q], R [auth n], V [auth F], Y [auth K]	IPR052399	Phage Baseplate Assembly Protein	Family
A [auth B], CA [auth R], D [auth v], FA [auth o], H [auth O], A [auth B], CA [auth R], D [auth v], FA [auth o], H [auth O], JA [auth Z], K [auth m], MA [auth e], O [auth Q], R [auth n], V [auth F], Y [auth K]	IPR058530	Baseplate J-like, C-terminal domain	Domain
A [auth B], CA [auth R], D [auth v], FA [auth o], H [auth O], A [auth B], CA [auth R], D [auth v], FA [auth o], H [auth O], JA [auth Z], K [auth m], MA [auth e], O [auth Q], R [auth n], V [auth F], Y [auth K]	IPR006949	Baseplate protein J-like, barrel domain	Domain
A [auth B], CA [auth R], D [auth v], FA [auth o], H [auth O], A [auth B], CA [auth R], D [auth v], FA [auth o], H [auth O], JA [auth Z], K [auth m], MA [auth e], O [auth Q], R [auth n], V [auth F], Y [auth K]	IPR058531	Baseplate J-like, central domain	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.