8UK3
The rotavirus VP5*/VP8* conformational transition permeabilizes membranes to Ca2+ (class 6 reconstruction)
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
A [auth 1] | SCOP2B Superfamily | VP4 trimerisation region-like | 8055448 | 3002293 | SCOP2B (2022-06-29) |
A [auth 1] | SCOP2B Superfamily | VP4 membrane interaction domain | 8039563 | 3002014 | SCOP2B (2022-06-29) |
C [auth 2] | SCOP2B Superfamily | VP4 membrane interaction domain | 8039563 | 3002014 | SCOP2B (2022-06-29) |
C [auth 2] | SCOP2B Superfamily | VP4 trimerisation region-like | 8055448 | 3002293 | SCOP2B (2022-06-29) |
E [auth 3] | SCOP2B Superfamily | VP4 trimerisation region-like | 8055448 | 3002293 | SCOP2B (2022-06-29) |
E [auth 3] | SCOP2B Superfamily | VP4 membrane interaction domain | 8039563 | 3002014 | SCOP2B (2022-06-29) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A [auth 1], C [auth 2], E [auth 3] | PF17477 | Rotavirus VP4 membrane interaction domain (Rota_VP4_MID) | Rotavirus VP4 membrane interaction domain | This entry represents the VP4 membrane interaction domain. | Domain |
A [auth 1], C [auth 2], E [auth 3] | PF17478 | Rotavirus VP4 helical domain (VP4_helical) | Rotavirus VP4 helical domain | - | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A [auth 1], C [auth 2], E [auth 3] | IPR000416 | Haemagglutinin outer capsid protein VP4, concanavalin-like domain | Domain |
A [auth 1], C [auth 2], E [auth 3] | IPR035330 | Rotavirus VP4, membrane interaction domain | Domain |
A [auth 1], C [auth 2], E [auth 3] | IPR013320 | Concanavalin A-like lectin/glucanase domain superfamily | Homologous Superfamily |
A [auth 1], C [auth 2], E [auth 3] | IPR035329 | Rotavirus VP4 helical domain | Domain |
A [auth 1], C [auth 2], E [auth 3] | IPR042546 | Outer capsid protein VP4 | Family |
A [auth 1], C [auth 2], E [auth 3] | IPR038017 | Rotavirus VP4, membrane interaction domain superfamily | Homologous Superfamily |
IPR042207 | Glycoprotein VP7, domain 1 | Homologous Superfamily | |
IPR001963 | Glycoprotein VP7 | Family | |
IPR042210 | Glycoprotein VP7, domain 2 | Homologous Superfamily |