Annotations: 8RXB

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A [auth E]	SCOP2B Superfamily	RING/U-box like	8053236	3000160	SCOP2B (2022-06-29)
A [auth E]	SCOP2B Superfamily	RING/U-box like	8053235	3000160	SCOP2B (2022-06-29)
C [auth A]	SCOP2B Superfamily	RING/U-box like	8053235	3000160	SCOP2B (2022-06-29)
C [auth A]	SCOP2B Superfamily	RING/U-box like	8053236	3000160	SCOP2B (2022-06-29)
E [auth D]	SCOP2B Superfamily	RING/U-box like	8053236	3000160	SCOP2B (2022-06-29)
E [auth D]	SCOP2B Superfamily	RING/U-box like	8053235	3000160	SCOP2B (2022-06-29)
G [auth I]	SCOP2B Superfamily	RING/U-box like	8053236	3000160	SCOP2B (2022-06-29)
G [auth I]	SCOP2B Superfamily	RING/U-box like	8053235	3000160	SCOP2B (2022-06-29)
I [auth L]	SCOP2B Superfamily	RING/U-box like	8053235	3000160	SCOP2B (2022-06-29)
I [auth L]	SCOP2B Superfamily	RING/U-box like	8053236	3000160	SCOP2B (2022-06-29)
K [auth P]	SCOP2B Superfamily	RING/U-box like	8053235	3000160	SCOP2B (2022-06-29)
K [auth P]	SCOP2B Superfamily	RING/U-box like	8053236	3000160	SCOP2B (2022-06-29)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth E], C [auth A], E [auth D], G [auth I], I [auth L], A [auth E], C [auth A], E [auth D], G [auth I], I [auth L], K [auth P]	PF09416	RNA helicase (UPF2 interacting domain) (UPF1_Zn_bind)	RNA helicase (UPF2 interacting domain)	UPF1 is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation. This domain contains 3 zinc binding motifs and forms interactions with another protein (UPF2) that is also involved nonsense-mediat ...	UPF1 is an essential RNA helicase that detects mRNAs containing premature stop codons and triggers their degradation. This domain contains 3 zinc binding motifs and forms interactions with another protein (UPF2) that is also involved nonsense-mediated mRNA decay (NMD) [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth E], C [auth A], E [auth D], G [auth I], I [auth L], A [auth E], C [auth A], E [auth D], G [auth I], I [auth L], K [auth P]	Regulator of nonsense transcripts 1	catalytic activity, acting on a nucleic acid helicase activity catalytic activity ATP-dependent activity protein-containing complex binding chromatin binding binding RNA binding organic cyclic compound binding nucleic acid binding sequence-specific DNA binding DNA binding telomeric DNA binding adenyl ribonucleotide binding catalytic activity, acting on a nucleic acid helicase activity catalytic activity ATP-dependent activity protein-containing complex binding chromatin binding binding RNA binding organic cyclic compound binding nucleic acid binding sequence-specific DNA binding DNA binding telomeric DNA binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity, acting on RNA RNA helicase activity ATP-dependent activity, acting on RNA cation binding transition metal ion binding zinc ion binding metal ion binding ATP-dependent activity, acting on DNA DNA helicase activity catalytic activity, acting on DNA double-stranded DNA helicase activity	nucleobase-containing compound metabolic process DNA replication metabolic process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process regulation of cellular process catabolic process cellular biosynthetic process negative regulation of biological process RNA metabolic process negative regulation of cellular metabolic process macromolecule catabolic process nucleobase-containing compound metabolic process DNA replication metabolic process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process regulation of cellular process catabolic process cellular biosynthetic process negative regulation of biological process RNA metabolic process negative regulation of cellular metabolic process macromolecule catabolic process negative regulation of cellular process RNA catabolic process negative regulation of macromolecule metabolic process regulation of biosynthetic process mRNA catabolic process nuclear-transcribed mRNA catabolic process regulation of biological process cellular metabolic process negative regulation of metabolic process biological regulation regulation of cellular metabolic process regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process mRNA metabolic process negative regulation of cellular biosynthetic process nucleobase-containing compound catabolic process regulation of cellular biosynthetic process regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process nucleic acid catabolic process regulation of macromolecule biosynthetic process cellular process regulation of metabolic process cell cycle phase transition cell cycle cell cycle process cellular localization nitrogen compound transport nucleocytoplasmic transport transport nuclear transport mRNA transport localization mRNA export from nucleus establishment of localization in cell RNA localization nuclear export nucleobase-containing compound transport RNA transport nucleic acid transport intracellular transport establishment of localization RNA export from nucleus establishment of RNA localization macromolecule localization cellular response to stimulus biological process involved in interspecies interaction between organisms response to lipid response to stimulus response to other organism cellular response to lipopolysaccharide response to oxygen-containing compound response to external stimulus cellular response to molecule of bacterial origin response to lipopolysaccharide cellular response to oxygen-containing compound response to biotic stimulus cellular response to biotic stimulus cellular response to chemical stimulus response to chemical response to bacterium cellular response to lipid response to external biotic stimulus response to molecule of bacterial origin regulation of cellular component organization organonitrogen compound biosynthetic process protein-containing complex disassembly regulation of protein-containing complex disassembly regulation of primary metabolic process cellular component organization post-transcriptional regulation of gene expression protein metabolic process translational termination cellular component organization or biogenesis cellular component disassembly organonitrogen compound metabolic process protein-containing complex organization regulation of protein metabolic process regulation of translational termination translation regulation of translation 3'-UTR-mediated mRNA destabilization positive regulation of metabolic process regulation of RNA metabolic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process regulation of biological quality positive regulation of nucleobase-containing compound metabolic process positive regulation of mRNA metabolic process positive regulation of RNA metabolic process positive regulation of biological process mRNA destabilization regulation of mRNA catabolic process RNA destabilization regulation of catabolic process positive regulation of catabolic process regulation of mRNA stability positive regulation of mRNA catabolic process regulation of RNA stability regulation of mRNA metabolic process regulation of telomere maintenance telomere organization chromosome organization regulation of chromosome organization regulation of organelle organization telomere maintenance organelle organization regulation of DNA metabolic process positive regulation of mRNA cis splicing, via spliceosome regulation of mRNA splicing, via spliceosome mRNA processing positive regulation of macromolecule biosynthetic process regulation of mRNA cis splicing, via spliceosome RNA processing mRNA cis splicing, via spliceosome positive regulation of mRNA processing positive regulation of mRNA splicing, via spliceosome positive regulation of cellular metabolic process RNA biosynthetic process nucleic acid biosynthetic process positive regulation of biosynthetic process positive regulation of cellular process regulation of mRNA processing RNA splicing nucleobase-containing compound biosynthetic process regulation of RNA splicing RNA splicing, via transesterification reactions positive regulation of gene expression mRNA splicing, via spliceosome RNA splicing, via transesterification reactions with bulged adenosine as nucleophile positive regulation of RNA splicing positive regulation of cellular biosynthetic process histone mRNA catabolic process histone mRNA metabolic process DNA duplex unwinding DNA geometric change DNA conformation change cellular response to stress DNA damage response response to stress DNA repair DNA-templated DNA replication nuclear DNA replication cell cycle DNA replication telomere maintenance via semi-conservative replication nuclear-transcribed mRNA catabolic process, nonsense-mediated decay response to peptide cellular response to interleukin-1 response to cytokine cellular response to cytokine stimulus response to interleukin-1	intracellular anatomical structure cytoplasm cellular anatomical entity cytosol membrane-bounded organelle protein-containing complex nucleus nuclear protein-containing complex supraspliceosomal complex intracellular membrane-bounded organelle intracellular organelle spliceosomal complex organelle ribonucleoprotein complex intracellular anatomical structure cytoplasm cellular anatomical entity cytosol membrane-bounded organelle protein-containing complex nucleus nuclear protein-containing complex supraspliceosomal complex intracellular membrane-bounded organelle intracellular organelle spliceosomal complex organelle ribonucleoprotein complex membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen protein-DNA complex intracellular non-membrane-bounded organelle chromatin chromosome non-membrane-bounded organelle perinuclear region of cytoplasm exon-exon junction complex cytoplasmic ribonucleoprotein granule ribonucleoprotein granule supramolecular complex P-body chromosome, telomeric region chromosomal region
B [auth F], D [auth B], F [auth G], H [auth J], J [auth N], B [auth F], D [auth B], F [auth G], H [auth J], J [auth N], L [auth Q]	Telomerase-binding protein EST1A	ribonucleoprotein complex binding protein-containing complex binding binding RNA binding organic cyclic compound binding nucleic acid binding sequence-specific DNA binding DNA binding telomeric DNA binding telomerase RNA binding endonuclease activity nuclease activity hydrolase activity, acting on ester bonds catalytic activity, acting on RNA ribonucleoprotein complex binding protein-containing complex binding binding RNA binding organic cyclic compound binding nucleic acid binding sequence-specific DNA binding DNA binding telomeric DNA binding telomerase RNA binding endonuclease activity nuclease activity hydrolase activity, acting on ester bonds catalytic activity, acting on RNA RNA endonuclease activity catalytic activity, acting on a nucleic acid RNA nuclease activity hydrolase activity catalytic activity protein binding DNA polymerase binding enzyme binding cation binding ion binding metal ion binding small molecule binding	regulation of telomere maintenance regulation of cellular component organization regulation of cellular process cellular biosynthetic process telomere organization regulation of DNA biosynthetic process regulation of primary metabolic process RNA-templated DNA biosynthetic process telomere maintenance via telomere lengthening cellular component organization nucleobase-containing compound metabolic process nucleic acid biosynthetic process cellular component organization or biogenesis regulation of nucleobase-containing compound metabolic process regulation of telomere maintenance regulation of cellular component organization regulation of cellular process cellular biosynthetic process telomere organization regulation of DNA biosynthetic process regulation of primary metabolic process RNA-templated DNA biosynthetic process telomere maintenance via telomere lengthening cellular component organization nucleobase-containing compound metabolic process nucleic acid biosynthetic process cellular component organization or biogenesis regulation of nucleobase-containing compound metabolic process regulation of biosynthetic process regulation of biological process telomere maintenance via telomerase cellular metabolic process biological regulation chromosome organization primary metabolic process regulation of cellular metabolic process DNA metabolic process regulation of chromosome organization regulation of macromolecule metabolic process regulation of telomere maintenance via telomere lengthening nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process regulation of organelle organization regulation of telomere maintenance via telomerase telomere maintenance regulation of cellular biosynthetic process organelle organization biosynthetic process cellular process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of metabolic process DNA biosynthetic process regulation of DNA metabolic process cellular localization nitrogen compound transport nucleocytoplasmic transport transport nuclear transport mRNA transport localization mRNA export from nucleus establishment of localization in cell RNA localization nuclear export nucleobase-containing compound transport RNA transport nucleic acid transport intracellular transport gene expression establishment of localization RNA export from nucleus establishment of RNA localization macromolecule localization regulation of dephosphorylation dephosphorylation regulation of phosphate metabolic process phosphate-containing compound metabolic process regulation of phosphorus metabolic process phosphorus metabolic process catabolic process nuclear-transcribed mRNA catabolic process, nonsense-mediated decay negative regulation of biological process RNA metabolic process negative regulation of cellular metabolic process macromolecule catabolic process negative regulation of cellular process RNA catabolic process negative regulation of macromolecule metabolic process mRNA catabolic process nuclear-transcribed mRNA catabolic process negative regulation of metabolic process mRNA metabolic process negative regulation of cellular biosynthetic process nucleobase-containing compound catabolic process regulation of gene expression negative regulation of gene expression negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process nucleic acid catabolic process negative regulation of telomere maintenance negative regulation of chromosome organization negative regulation of nucleobase-containing compound metabolic process negative regulation of cellular component organization negative regulation of organelle organization telomere capping negative regulation of telomere capping negative regulation of DNA metabolic process regulation of telomere capping regulation of telomerase activity regulation of catalytic activity regulation of transferase activity regulation of molecular function	membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle cellular anatomical entity nucleolus intracellular organelle lumen intracellular organelle organelle lumen organelle intracellular non-membrane-bounded organelle nuclear lumen non-membrane-bounded organelle membrane-bounded organelle intracellular anatomical structure nucleus membrane-enclosed lumen intracellular membrane-bounded organelle cellular anatomical entity nucleolus intracellular organelle lumen intracellular organelle organelle lumen organelle intracellular non-membrane-bounded organelle nuclear lumen non-membrane-bounded organelle protein-containing complex catalytic complex nuclear protein-containing complex telomerase holoenzyme complex ribonucleoprotein complex cytoplasm cytosol chromosome chromosome, telomeric region chromosomal region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth E], C [auth A], E [auth D], G [auth I], I [auth L], A [auth E], C [auth A], E [auth D], G [auth I], I [auth L], K [auth P]	IPR041677	DNA2/NAM7 helicase, helicase domain	Domain
A [auth E], C [auth A], E [auth D], G [auth I], I [auth L], A [auth E], C [auth A], E [auth D], G [auth I], I [auth L], K [auth P]	IPR018999	RNA helicase UPF1, Cys/His rich zinc-binding domain	Domain
A [auth E], C [auth A], E [auth D], G [auth I], I [auth L], A [auth E], C [auth A], E [auth D], G [auth I], I [auth L], K [auth P]	IPR045055	DNA2/NAM7-like helicase	Family
A [auth E], C [auth A], E [auth D], G [auth I], I [auth L], A [auth E], C [auth A], E [auth D], G [auth I], I [auth L], K [auth P]	IPR040812	RNA helicase UPF1, 1B domain	Domain
A [auth E], C [auth A], E [auth D], G [auth I], I [auth L], A [auth E], C [auth A], E [auth D], G [auth I], I [auth L], K [auth P]	IPR041679	DNA2/NAM7 helicase-like, C-terminal	Domain
A [auth E], C [auth A], E [auth D], G [auth I], I [auth L], A [auth E], C [auth A], E [auth D], G [auth I], I [auth L], K [auth P]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A [auth E], C [auth A], E [auth D], G [auth I], I [auth L], A [auth E], C [auth A], E [auth D], G [auth I], I [auth L], K [auth P]	IPR006935	Helicase/UvrB, N-terminal	Domain
A [auth E], C [auth A], E [auth D], G [auth I], I [auth L], A [auth E], C [auth A], E [auth D], G [auth I], I [auth L], K [auth P]	IPR047187	Upf1-like, C-terminal helicase domain	Domain
B [auth F], D [auth B], F [auth G], H [auth J], J [auth N], B [auth F], D [auth B], F [auth G], H [auth J], J [auth N], L [auth Q]	IPR019458	Telomerase activating protein Est1-like, N-terminal	Domain
B [auth F], D [auth B], F [auth G], H [auth J], J [auth N], B [auth F], D [auth B], F [auth G], H [auth J], J [auth N], L [auth Q]	IPR018834	DNA/RNA-binding domain, Est1-type	Domain
B [auth F], D [auth B], F [auth G], H [auth J], J [auth N], B [auth F], D [auth B], F [auth G], H [auth J], J [auth N], L [auth Q]	IPR011990	Tetratricopeptide-like helical domain superfamily	Homologous Superfamily
B [auth F], D [auth B], F [auth G], H [auth J], J [auth N], B [auth F], D [auth B], F [auth G], H [auth J], J [auth N], L [auth Q]	IPR045153	Est1/Ebs1-like	Family
B [auth F], D [auth B], F [auth G], H [auth J], J [auth N], B [auth F], D [auth B], F [auth G], H [auth J], J [auth N], L [auth Q]	IPR002716	PIN domain	Domain
B [auth F], D [auth B], F [auth G], H [auth J], J [auth N], B [auth F], D [auth B], F [auth G], H [auth J], J [auth N], L [auth Q]	IPR029060	PIN-like domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A [auth E], C [auth A], E [auth D], G [auth I], I [auth L], A [auth E], C [auth A], E [auth D], G [auth I], I [auth L], K [auth P]	Pharos: Q92900	breast carcinoma osteosarcoma ovarian cancer
B [auth F], D [auth B], F [auth G], H [auth J], J [auth N], B [auth F], D [auth B], F [auth G], H [auth J], J [auth N], L [auth Q]	Pharos: Q86US8	attention deficit hyperactivity disorder, inattentive type heart disease osteoarthritis autism spectrum disorder myocardial infarction squamous cell carcinoma carcinoma of esophagus non-alcoholic fatty liver disease vascular disease

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.