8R09

Cryo-EM structure of the cross-exon pre-B+5'ss+ATPgammaS complex

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
A [auth 66]SCOP2B SuperfamilySm-like ribonucleoproteins8063442 3000419 SCOP2B (2021-05-27)
P [auth B3]SCOP2B SuperfamilyWD40 repeat-like8052534 3001694 SCOP2B (2021-05-27)
P [auth B3]SCOP2B SuperfamilyWD40 repeat-like8052535 3001694 SCOP2B (2021-05-27)
P [auth B3]SCOP2B SuperfamilyWD40 repeat-like8052534 3001694 SCOP2B (2021-05-27)
P [auth B3]SCOP2B SuperfamilyWD40 repeat-like8051197 3001694 SCOP2B (2021-05-27)
Q [auth BP]SCOP2B SuperfamilyTriquetra zinc finger motif8051848 3002040 SCOP2B (2021-05-27)
S [auth B6]SCOP2B SuperfamilyRNA-binding domain RBD8040695 3000110 SCOP2B (2021-05-27)
B [auth 67]SCOP2B SuperfamilySm-like ribonucleoproteins8063466 3000419 SCOP2B (2021-05-27)
EA [auth 42]SCOP2B SuperfamilySm-like ribonucleoproteins8041749 3000419 SCOP2B (2021-05-27)
FB [auth 52]SCOP2B SuperfamilySm-like ribonucleoproteins8041749 3000419 SCOP2B (2021-05-27)
T [auth 22]SCOP2B SuperfamilySm-like ribonucleoproteins8041749 3000419 SCOP2B (2021-05-27)
U [auth 2B]SCOP2B SuperfamilyRNA-binding domain RBD8035327 3000110 SCOP2B (2021-05-27)
CB [auth 5f]SCOP2B SuperfamilySm-like ribonucleoproteins8063452 3000419 SCOP2B (2021-05-27)
FA [auth 4f]SCOP2B SuperfamilySm-like ribonucleoproteins8063452 3000419 SCOP2B (2021-05-27)
V [auth 2f]SCOP2B SuperfamilySm-like ribonucleoproteins8063452 3000419 SCOP2B (2021-05-27)
EB [auth 5b]SCOP2B SuperfamilySm-like ribonucleoproteins8041747 3000419 SCOP2B (2021-05-27)
HA [auth 4b]SCOP2B SuperfamilySm-like ribonucleoproteins8041747 3000419 SCOP2B (2021-05-27)
W [auth 2b]SCOP2B SuperfamilySm-like ribonucleoproteins8041747 3000419 SCOP2B (2021-05-27)
BB [auth 53]SCOP2B SuperfamilySm-like ribonucleoproteins8041751 3000419 SCOP2B (2021-05-27)
GA [auth 43]SCOP2B SuperfamilySm-like ribonucleoproteins8041751 3000419 SCOP2B (2021-05-27)
X [auth 23]SCOP2B SuperfamilySm-like ribonucleoproteins8041751 3000419 SCOP2B (2021-05-27)
GB [auth 5g]SCOP2B SuperfamilySm-like ribonucleoproteins8063468 3000419 SCOP2B (2021-05-27)
IA [auth 4g]SCOP2B SuperfamilySm-like ribonucleoproteins8063468 3000419 SCOP2B (2021-05-27)
Y [auth 2g]SCOP2B SuperfamilySm-like ribonucleoproteins8063468 3000419 SCOP2B (2021-05-27)
DA [auth 4e]SCOP2B SuperfamilySm-like ribonucleoproteins8063476 3000419 SCOP2B (2021-05-27)
HB [auth 5e]SCOP2B SuperfamilySm-like ribonucleoproteins8063476 3000419 SCOP2B (2021-05-27)
Z [auth 2e]SCOP2B SuperfamilySm-like ribonucleoproteins8063476 3000419 SCOP2B (2021-05-27)
AA [auth 21]SCOP2B SuperfamilySm-like ribonucleoproteins8041748 3000419 SCOP2B (2021-05-27)
CA [auth 41]SCOP2B SuperfamilySm-like ribonucleoproteins8041748 3000419 SCOP2B (2021-05-27)
DB [auth 51]SCOP2B SuperfamilySm-like ribonucleoproteins8041748 3000419 SCOP2B (2021-05-27)
BA [auth 2A]SCOP2B SuperfamilyL domain-like8043993 3001010 SCOP2B (2021-05-27)
JA [auth B]SCOP2B SuperfamilyBrl domain-like8036193 3000115 SCOP2B (2021-05-27)
JA [auth B]SCOP2B SuperfamilyE set domains8055093 3000070 SCOP2B (2021-05-27)
KA [auth W]SCOP2B SuperfamilyCyclophilin-like8042789 3000168 SCOP2B (2021-05-27)
NA [auth L]SCOP2B SuperfamilyNop domain8033305 3001551 SCOP2B (2021-05-27)
QA [auth A]SCOP2B SuperfamilyRibonuclease H-like8041105 3000143 SCOP2B (2021-05-27)
QA [auth A]SCOP2B SuperfamilyJAB1/MPN domain-like8053277 3001105 SCOP2B (2021-05-27)
D [auth 63]SCOP2B SuperfamilySm-like ribonucleoproteins8063456 3000419 SCOP2B (2021-05-27)
UA [auth M]SCOP2B SuperfamilyL30e-like8043738 3001739 SCOP2B (2021-05-27)
VA [auth D]SCOP2B SuperfamilyThioredoxin-like8044390 3000031 SCOP2B (2021-05-27)
E [auth 68]SCOP2B SuperfamilySm-like ribonucleoproteins8063492 3000419 SCOP2B (2021-05-27)
F [auth 64]SCOP2B SuperfamilySm-like ribonucleoproteins8063488 3000419 SCOP2B (2021-05-27)
G [auth 65]SCOP2B SuperfamilySm-like ribonucleoproteins8063472 3000419 SCOP2B (2021-05-27)
I [auth B4]SCOP2B SuperfamilyRNA-binding domain RBD8090834 3000110 SCOP2B (2021-05-27)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A [auth 66]PF01423LSM domain (LSM)LSM domainThe LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ...The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) in common, which assemble around the Sm site present in four of the major spliceosomal small nuclear RNAs. The U6 snRNP binds to the LSM (Like Sm) proteins [3]. Sm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Sm proteins. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. This family also includes the bacterial Hfq (host factor Q) proteins. Hfq are also RNA-binding proteins, that form hexameric rings.
Domain
K [auth 8]PF12874Zinc-finger of C2H2 type (zf-met)Zinc-finger of C2H2 typeThis is a zinc-finger domain with the CxxCx(12)Hx(6)H motif, found in multiple copies in a wide range of proteins from plants to metazoans. Some member proteins, particularly those from plants, are annotated as being RNA-binding.Domain
K [auth 8]PF16835Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11) (SF3A2)Pre-mRNA-splicing factor SF3a complex subunit 2 (Prp11)SF3A2 is one of the components of the SF3a splicing factor complex of the mature U2 snRNP (small nuclear ribonucleoprotein particle). In yeast, SF3a shows a bifurcated assembly structure of three subunits, Prp9 (subunit 3), Prp11 (subunit 2) and Prp2 ...SF3A2 is one of the components of the SF3a splicing factor complex of the mature U2 snRNP (small nuclear ribonucleoprotein particle). In yeast, SF3a shows a bifurcated assembly structure of three subunits, Prp9 (subunit 3), Prp11 (subunit 2) and Prp21 (subunit 1). with Prp21 wrapping around Prp11 [1].
Domain
L [auth 9]PF16837Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 (SF3A3)Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9SF3A3 is one of the components of the SF3a splicing factor complex of the mature U2 snRNP (small nuclear ribonucleoprotein particle). In yeast, SF3a shows a bifurcated assembly structure of three subunits, Prp9 (subunit 3), Prp11 (subunit 2) and Prp2 ...SF3A3 is one of the components of the SF3a splicing factor complex of the mature U2 snRNP (small nuclear ribonucleoprotein particle). In yeast, SF3a shows a bifurcated assembly structure of three subunits, Prp9 (subunit 3), Prp11 (subunit 2) and Prp21 (subunit 1). Prp9 and Prp21 were not thought to interact with each other but the alpha1 helix of Prp9 does make important contacts with the SURP2 domain of Prp21, thus the two do interact via a bidentate-binding mode. Prp9 harbours a major binding site for stem-loop IIa of U2 snRNA [1].
Domain
L [auth 9]PF13297Replication stress response SDE2 C-terminal (SDE2_2C)Replication stress response SDE2 C-terminalThis domain represents the C-terminal region of the Replication stress response SDE2, a genome surveillance factor. It contains the DNA-binding SAP domain, frequently found in proteins involved in DNA repair. SDE2 C-terminal domain must be cleaved fr ...This domain represents the C-terminal region of the Replication stress response SDE2, a genome surveillance factor. It contains the DNA-binding SAP domain, frequently found in proteins involved in DNA repair. SDE2 C-terminal domain must be cleaved from its N-terminal at a diglycine motif within the ubiquitin-like fold, after Proliferating cell nuclear antigen (PCNA) interaction. This generates a functional protein that negatively regulates damage-inducible PCNA monoubiquitination, which then is proteolytically degraded to allow S phase progression and replication fork recovery in response to DNA damage [1].
Domain
L [auth 9]PF12108Splicing factor SF3a60 binding domain (SF3a60_bindingd)Splicing factor SF3a60 binding domainThis domain is found in eukaryotes. This domain is about 30 amino acids in length. This domain has a single completely conserved residue Y that may be functionally important. SF3a60 makes up the SF3a complex with SF3a66 and SF3a120. This domain is th ...This domain is found in eukaryotes. This domain is about 30 amino acids in length. This domain has a single completely conserved residue Y that may be functionally important. SF3a60 makes up the SF3a complex with SF3a66 and SF3a120. This domain is the binding site of SF3a60 for SF3a120. The SF3a complex is part of the spliceosome, a protein complex involved in splicing mRNA after transcription.
Domain
M [auth B2]PF04037Domain of unknown function (DUF382) (DUF382)Domain of unknown function (DUF382)- Family
M [auth B2]PF04046PSP (PSP)PSP- Family
P [auth B3]PF10433Mono-functional DNA-alkylating methyl methanesulfonate N-term (MMS1_N)Mono-functional DNA-alkylating methyl methanesulfonate N-term- Repeat
P [auth B3]PF03178CPSF A subunit region (CPSF_A)CPSF A subunit region- Repeat
R [auth B1]PF22646PPP2R1A-like HEAT repeat (PPP2R1A-like_HEAT)PPP2R1A-like HEAT repeat- Repeat
S [auth B6]PF00076RNA recognition motif (RRM_1)RNA recognition motifThe RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ...The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins (Swiss:P05455) have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins (Swiss:P05455) are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease.
Domain
B [auth 67]PF01423LSM domain (LSM)LSM domainThe LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ...The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) in common, which assemble around the Sm site present in four of the major spliceosomal small nuclear RNAs. The U6 snRNP binds to the LSM (Like Sm) proteins [3]. Sm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Sm proteins. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. This family also includes the bacterial Hfq (host factor Q) proteins. Hfq are also RNA-binding proteins, that form hexameric rings.
Domain
EA [auth 42],
FB [auth 52],
T [auth 22]		PF01423LSM domain (LSM)LSM domainThe LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ...The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) in common, which assemble around the Sm site present in four of the major spliceosomal small nuclear RNAs. The U6 snRNP binds to the LSM (Like Sm) proteins [3]. Sm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Sm proteins. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. This family also includes the bacterial Hfq (host factor Q) proteins. Hfq are also RNA-binding proteins, that form hexameric rings.
Domain
U [auth 2B]PF00076RNA recognition motif (RRM_1)RNA recognition motifThe RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ...The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins (Swiss:P05455) have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins (Swiss:P05455) are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease.
Domain
U [auth 2B]PF01423LSM domain (LSM)LSM domainThe LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ...The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) in common, which assemble around the Sm site present in four of the major spliceosomal small nuclear RNAs. The U6 snRNP binds to the LSM (Like Sm) proteins [3]. Sm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Sm proteins. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. This family also includes the bacterial Hfq (host factor Q) proteins. Hfq are also RNA-binding proteins, that form hexameric rings.
Domain
BB [auth 53],
GA [auth 43],
X [auth 23]		PF01423LSM domain (LSM)LSM domainThe LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ...The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) in common, which assemble around the Sm site present in four of the major spliceosomal small nuclear RNAs. The U6 snRNP binds to the LSM (Like Sm) proteins [3]. Sm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Sm proteins. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. This family also includes the bacterial Hfq (host factor Q) proteins. Hfq are also RNA-binding proteins, that form hexameric rings.
Domain
AA [auth 21],
CA [auth 41],
DB [auth 51]		PF01423LSM domain (LSM)LSM domainThe LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ...The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) in common, which assemble around the Sm site present in four of the major spliceosomal small nuclear RNAs. The U6 snRNP binds to the LSM (Like Sm) proteins [3]. Sm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Sm proteins. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. This family also includes the bacterial Hfq (host factor Q) proteins. Hfq are also RNA-binding proteins, that form hexameric rings.
Domain
JA [auth B]PF02889Sec63 Brl domain (Sec63)Sec63 Brl domain- Family
JA [auth B]PF00270DEAD/DEAH box helicase (DEAD)DEAD/DEAH box helicaseMembers of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome ...Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Domain
JA [auth B]PF00271Helicase conserved C-terminal domain (Helicase_C)Helicase conserved C-terminal domainThe Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase.Domain
C [auth 62]PF01423LSM domain (LSM)LSM domainThe LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ...The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) in common, which assemble around the Sm site present in four of the major spliceosomal small nuclear RNAs. The U6 snRNP binds to the LSM (Like Sm) proteins [3]. Sm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Sm proteins. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. This family also includes the bacterial Hfq (host factor Q) proteins. Hfq are also RNA-binding proteins, that form hexameric rings.
Domain
KA [auth W]PF00160Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD (Pro_isomerase)Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLDThe peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyse peptidyl-prolyl isomerisation during which the peptide bond pr ...The peptidyl-prolyl cis-trans isomerases, also known as cyclophilins, share this domain of about 109 amino acids. Cyclophilins have been found in all organisms studied so far and catalyse peptidyl-prolyl isomerisation during which the peptide bond preceding proline (the peptidyl-prolyl bond) is stabilised in the cis conformation. Mammalian cyclophilin A (CypA) is a major cellular target for the immunosuppressive drug cyclosporin A (CsA). Other roles for cyclophilins may include chaperone and cell signalling function [1].
Domain
LA [auth G]PF00270DEAD/DEAH box helicase (DEAD)DEAD/DEAH box helicaseMembers of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome ...Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression.
Domain
MA [auth J]PF06544Small nuclear ribonucleoprotein Prp3, C-terminal domain (Prp3_C)Small nuclear ribonucleoprotein Prp3, C-terminal domainThis domain is found at the C-terminal end of U4/U6 and U4/U5/U6- small nuclear ribonucleoprotein Prp3, part of the tri-RNA complex that form the spliceosome. Prp3 plays a key role in the recognition of the snRNA duplex. This binding domain, highly c ...This domain is found at the C-terminal end of U4/U6 and U4/U5/U6- small nuclear ribonucleoprotein Prp3, part of the tri-RNA complex that form the spliceosome. Prp3 plays a key role in the recognition of the snRNA duplex. This binding domain, highly conserved among eukaryotes, interacts with the 3' end of U6 snRNA. It adopts a ferredoxin-like fold, showing a five-stranded mixed beta-sheet with three alpha-helices, two of them running parallel to the beta-strands on one side of the sheet and one on the other. This fold is extended with a long beta-hairpin, an extra beta-strand, an helix and a final loop at the C terminus. It is located C-terminal to Pfam:PF08572 [1-4].
Domain
NA [auth L]PF09785Prp31 C terminal domain (Prp31_C)Prp31 C terminal domain- Family
NA [auth L]PF01798snoRNA binding domain, fibrillarin (Nop)snoRNA binding domain, fibrillarin- Family
OA [auth F]PF08799pre-mRNA processing factor 4 (PRP4) like (PRP4)pre-mRNA processing factor 4 (PRP4) likeThis small domain is found on PRP4 ribonuleoproteins. PRP4 is a U4/U6 small nuclear ribonucleoprotein that is involved in pre-mRNA processing.Domain
OA [auth F]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
PA [auth N]PF14559Tetratricopeptide repeat (TPR_19)Tetratricopeptide repeat- Repeat
PA [auth N]PF06424PRP1 splicing factor, N-terminal (PRP1_N)PRP1 splicing factor, N-terminalThis domain is specific to the N-terminal part of the prp1 splicing factor, which is involved in mRNA splicing (and possibly also poly(A)+ RNA nuclear export and cell cycle progression). This domain is specific to the N terminus of the RNA splicing f ...This domain is specific to the N-terminal part of the prp1 splicing factor, which is involved in mRNA splicing (and possibly also poly(A)+ RNA nuclear export and cell cycle progression). This domain is specific to the N terminus of the RNA splicing factor encoded by prp1 [1]. It is involved in mRNA splicing and possibly also poly(A)and RNA nuclear export and cell cycle progression.
Domain
PA [auth N]PF13432Tetratricopeptide repeat (TPR_16)Tetratricopeptide repeat- Repeat
QA [auth A]PF10597U5-snRNA binding site 2 of PrP8 (U5_2-snRNA_bdg)U5-snRNA binding site 2 of PrP8The essential spliceosomal protein Prp8 interacts with U5 and U6 snRNAs and with specific pre-mRNA sequences that participate in catalysis [1]. This close association with crucial RNA sequences, together with extensive genetic evidence, suggests that ...The essential spliceosomal protein Prp8 interacts with U5 and U6 snRNAs and with specific pre-mRNA sequences that participate in catalysis [1]. This close association with crucial RNA sequences, together with extensive genetic evidence, suggests that Prp8 could directly affect the function of the catalytic core, perhaps acting as a splicing cofactor [2].
Domain
QA [auth A]PF10598RNA recognition motif of the spliceosomal PrP8 (RRM_4)RNA recognition motif of the spliceosomal PrP8The large RNA-protein complex of the spliceosome catalyses pre-mRNA splicing. One of the most conserved core proteins is PrP8 which occupies a central position in the catalytic core of the spliceosome, and has been implicated in several crucial molec ...The large RNA-protein complex of the spliceosome catalyses pre-mRNA splicing. One of the most conserved core proteins is PrP8 which occupies a central position in the catalytic core of the spliceosome, and has been implicated in several crucial molecular rearrangements that occur there, and has recently come under the spotlight for its role in the inherited human disease, Retinitis Pigmentosa [1]. The RNA-recognition motif of PrP8 is highly conserved and provides a possible RNA binding centre for the 5-prime SS, BP, or 3-prime SS of pre-mRNA which are known to contact with Prp8. The most conserved regions of an RRM are defined as the RNP1 and RNP2 sequences. Recognition of RNA targets can also be modulated by a number of other factors, most notably the two loops beta1-alpha1, beta2-beta3 and the amino acid residues C-terminal to the RNP2 domain [2].
Domain
QA [auth A]PF10596U6-snRNA interacting domain of PrP8 (U6-snRNA_bdg)U6-snRNA interacting domain of PrP8This domain incorporates the interacting site for the U6-snRNA as part of the U4/U6.U5 tri-snRNPs complex of the spliceosome, and is the prime candidate for the role of cofactor for the spliceosome's RNA core. The essential spliceosomal protein Prp8 ...This domain incorporates the interacting site for the U6-snRNA as part of the U4/U6.U5 tri-snRNPs complex of the spliceosome, and is the prime candidate for the role of cofactor for the spliceosome's RNA core. The essential spliceosomal protein Prp8 interacts with U5 and U6 snRNAs and with specific pre-mRNA sequences that participate in catalysis. This close association with crucial RNA sequences, together with extensive genetic evidence, suggests that Prp8 could directly affect the function of the catalytic core, perhaps acting as a splicing cofactor [1].
Domain
QA [auth A]PF12134PRP8 domain IV core (PRP8_domainIV)PRP8 domain IV coreThis domain is found in eukaryotes, and is about 20 amino acids in length. It is found associated with Pfam:PF10597, Pfam:PF10596, Pfam:PF10598, Pfam:PF08083, Pfam:PF08082, Pfam:PF01398, Pfam:PF08084. There is a conserved LILR sequence motif. The dom ...This domain is found in eukaryotes, and is about 20 amino acids in length. It is found associated with Pfam:PF10597, Pfam:PF10596, Pfam:PF10598, Pfam:PF08083, Pfam:PF08082, Pfam:PF01398, Pfam:PF08084. There is a conserved LILR sequence motif. The domain is a selenomethionine domain in a subunit of the spliceosome. The function of PRP8 domain IV is believed to be interaction with the splicosomal core.
Domain
QA [auth A]PF08082PRO8NT (NUC069), PrP8 N-terminal domain (PRO8NT)PRO8NT (NUC069), PrP8 N-terminal domainThe PRO8NT domain is found at the N-terminus of pre-mRNA splicing factors of PRO8 family [1]. The NLS or nuclear localisation signal for these spliceosome proteins begins at the start and runs for 60 residues. N-terminal to this domain is a highly va ...The PRO8NT domain is found at the N-terminus of pre-mRNA splicing factors of PRO8 family [1]. The NLS or nuclear localisation signal for these spliceosome proteins begins at the start and runs for 60 residues. N-terminal to this domain is a highly variable proline-rich region [4].
Domain
QA [auth A]PF08083PROCN (NUC071) domain (PROCN)PROCN (NUC071) domainThe PROCN domain is the central domain in pre-mRNA splicing factors of PRO8 family [1].Domain
QA [auth A]PF01398JAB1/Mov34/MPN/PAD-1 ubiquitin protease (JAB)JAB1/Mov34/MPN/PAD-1 ubiquitin protease- Family
QA [auth A]PF08084PROCT (NUC072) domain (PROCT)PROCT (NUC072) domainThe PROCT domain is the C-terminal domain in pre-mRNA splicing factors of PRO8 family [1].Domain
RA [auth U]PF02148Zn-finger in ubiquitin-hydrolases and other protein (zf-UBP)Zn-finger in ubiquitin-hydrolases and other protein- Domain
RA [auth U]PF00443Ubiquitin carboxyl-terminal hydrolase (UCH)Ubiquitin carboxyl-terminal hydrolase- Family
SA [auth S]PF03343SART-1 family (SART-1)SART-1 family- Family
TA [auth C]PF00679Elongation factor G C-terminus (EFG_C)Elongation factor G C-terminusThis domain includes the carboxyl terminal regions of Elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopt a ferredoxin-like fold.Domain
TA [auth C]PF00009Elongation factor Tu GTP binding domain (GTP_EFTU)Elongation factor Tu GTP binding domainThis domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains.Domain
TA [auth C]PF14492Elongation Factor G, domain III (EFG_III)Elongation Factor G, domain IIIThis domain is found in Elongation Factor G. It shares a similar structure with domain V (Pfam:PF00679). Structural studies in drosophila indicate this is domain 3 [1].Domain
TA [auth C]PF03144Elongation factor Tu domain 2 (GTP_EFTU_D2)Elongation factor Tu domain 2Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as e ...Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as elongation factor G and translation initiation factor IF-2. This domain is structurally related to Pfam:PF03143, and in fact has weak sequence matches to this domain.
Domain
TA [auth C]PF03764Elongation factor G, domain IV (EFG_IV)Elongation factor G, domain IVThis domain is found in elongation factor G, elongation factor 2 and some tetracycline resistance proteins and adopts a ribosomal protein S5 domain 2-like fold.Domain
D [auth 63]PF01423LSM domain (LSM)LSM domainThe LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ...The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) in common, which assemble around the Sm site present in four of the major spliceosomal small nuclear RNAs. The U6 snRNP binds to the LSM (Like Sm) proteins [3]. Sm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Sm proteins. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. This family also includes the bacterial Hfq (host factor Q) proteins. Hfq are also RNA-binding proteins, that form hexameric rings.
Domain
UA [auth M]PF01248Ribosomal protein L7Ae/L30e/S12e/Gadd45 family (Ribosomal_L7Ae)Ribosomal protein L7Ae/L30e/S12e/Gadd45 familyThis family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD11 ...This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, Ribosomal protein L30 from eukaryotes and archaebacteria. Gadd45 and MyD118 [1].
Domain
VA [auth D]PF02966Mitosis protein DIM1 (DIM1)Mitosis protein DIM1- Domain
YA [auth 7]PF01805Surp module (Surp)Surp module- Family
YA [auth 7]PF12230Pre-mRNA splicing factor PRP21 like protein (PRP21_like_P)Pre-mRNA splicing factor PRP21 like protein- Family
E [auth 68]PF01423LSM domain (LSM)LSM domainThe LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ...The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) in common, which assemble around the Sm site present in four of the major spliceosomal small nuclear RNAs. The U6 snRNP binds to the LSM (Like Sm) proteins [3]. Sm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Sm proteins. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. This family also includes the bacterial Hfq (host factor Q) proteins. Hfq are also RNA-binding proteins, that form hexameric rings.
Domain
F [auth 64]PF01423LSM domain (LSM)LSM domainThe LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ...The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) in common, which assemble around the Sm site present in four of the major spliceosomal small nuclear RNAs. The U6 snRNP binds to the LSM (Like Sm) proteins [3]. Sm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Sm proteins. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. This family also includes the bacterial Hfq (host factor Q) proteins. Hfq are also RNA-binding proteins, that form hexameric rings.
Domain
G [auth 65]PF01423LSM domain (LSM)LSM domainThe LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) i ...The LSM domain contains Sm proteins as well as other related LSM (Like Sm) proteins. The U1, U2, U4/U6, and U5 small nuclear ribonucleoprotein particles (snRNPs) involved in pre-mRNA splicing contain seven Sm proteins (B/B', D1, D2, D3, E, F and G) in common, which assemble around the Sm site present in four of the major spliceosomal small nuclear RNAs. The U6 snRNP binds to the LSM (Like Sm) proteins [3]. Sm proteins are also found in archaebacteria, which do not have any splicing apparatus suggesting a more general role for Sm proteins. All Sm proteins contain a common sequence motif in two segments, Sm1 and Sm2, separated by a short variable linker. This family also includes the bacterial Hfq (host factor Q) proteins. Hfq are also RNA-binding proteins, that form hexameric rings.
Domain
H [auth E]PF00400WD domain, G-beta repeat (WD40)WD domain, G-beta repeat- Repeat
I [auth B4]PF00076RNA recognition motif (RRM_1)RNA recognition motifThe RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and pro ...The RRM motif (a.k.a. RRM, RBD, or RNP domain) is probably diagnostic of an RNA binding protein. RRMs are found in a variety of RNA binding proteins, including various hnRNP proteins, proteins implicated in regulation of alternative splicing, and protein components of snRNPs. The motif also appears in a few single stranded DNA binding proteins. The RRM structure consists of four strands and two helices arranged in an alpha/beta sandwich, with a third helix present during RNA binding in some cases The C-terminal beta strand (4th strand) and final helix are hard to align and have been omitted in the SEED alignment The LA proteins (Swiss:P05455) have an N terminal rrm which is included in the seed. There is a second region towards the C terminus that has some features characteristic of a rrm but does not appear to have the important structural core of a rrm. The LA proteins (Swiss:P05455) are one of the main autoantigens in Systemic lupus erythematosus (SLE), an autoimmune disease.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A [auth 66]U6 snRNA-associated Sm-like protein LSm6
J [auth Z]pre-mRNA---
K [auth 8]Splicing factor 3A subunit 2
L [auth 9]Splicing factor 3A subunit 3
M [auth B2]Splicing factor 3B subunit 2
N [auth B5]Splicing factor 3B subunit 5
O [auth 2]U2 snRNA---
P [auth B3]Splicing factor 3B subunit 3
Q [auth BP]PHD finger-like domain-containing protein 5A
R [auth B1]Splicing factor 3B subunit 1
S [auth B6]Splicing factor 3B subunit 6
B [auth 67]U6 snRNA-associated Sm-like protein LSm7
EA [auth 42],
FB [auth 52],
T [auth 22]		Small nuclear ribonucleoprotein Sm D2
U [auth 2B]U2 small nuclear ribonucleoprotein B''
CB [auth 5f],
FA [auth 4f],
V [auth 2f]		Small nuclear ribonucleoprotein F
EB [auth 5b],
HA [auth 4b],
W [auth 2b]		Small nuclear ribonucleoprotein-associated proteins B and B'
BB [auth 53],
GA [auth 43],
X [auth 23]		Small nuclear ribonucleoprotein Sm D3
GB [auth 5g],
IA [auth 4g],
Y [auth 2g]		Small nuclear ribonucleoprotein G
DA [auth 4e],
HB [auth 5e],
Z [auth 2e]		Small nuclear ribonucleoprotein E
AA [auth 21],
CA [auth 41],
DB [auth 51]		Small nuclear ribonucleoprotein Sm D1
BA [auth 2A]U2 small nuclear ribonucleoprotein A'
JA [auth B]U5 small nuclear ribonucleoprotein 200 kDa helicase
C [auth 62]U6 snRNA-associated Sm-like protein LSm2
KA [auth W]Peptidyl-prolyl cis-trans isomerase H
LA [auth G]Probable ATP-dependent RNA helicase DDX23
MA [auth J]U4/U6 small nuclear ribonucleoprotein Prp3
NA [auth L]U4/U6 small nuclear ribonucleoprotein Prp31
OA [auth F]U4/U6 small nuclear ribonucleoprotein Prp4
PA [auth N]Pre-mRNA-processing factor 6
QA [auth A]Pre-mRNA-processing-splicing factor 8
RA [auth U]Ubiquitin carboxyl-terminal hydrolase 39
SA [auth S]U4/U6.U5 tri-snRNP-associated protein 1
TA [auth C]116 kDa U5 small nuclear ribonucleoprotein component
D [auth 63]U6 snRNA-associated Sm-like protein LSm3
UA [auth M]NHP2-like protein 1, N-terminally processed
VA [auth D]Thioredoxin-like protein 4A-
WA [auth 5]U5 snRNA---
XA [auth z]5'ss oligo---
YA [auth 7]Splicing factor 3A subunit 1
ZA [auth 4]U4 snRNA---
AB [auth 6]U6 snRNA---
E [auth 68]U6 snRNA-associated Sm-like protein LSm8
F [auth 64]U6 snRNA-associated Sm-like protein LSm4
G [auth 65]U6 snRNA-associated Sm-like protein LSm5
H [auth E]U5 small nuclear ribonucleoprotein 40 kDa protein
I [auth B4]Splicing factor 3B subunit 4

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A [auth 66]IPR001163Sm domain, eukaryotic/archaea-typeDomain
A [auth 66]IPR047575Sm domainDomain
A [auth 66]IPR016487Sm-like protein Lsm6/SmFFamily
A [auth 66]IPR010920LSM domain superfamilyHomologous Superfamily
K [auth 8]IPR031781SF3A2 domainDomain
K [auth 8]IPR003604Matrin/U1-C-like, C2H2-type zinc fingerDomain
K [auth 8]IPR013087Zinc finger C2H2-typeDomain
K [auth 8]IPR036236Zinc finger C2H2 superfamilyHomologous Superfamily
K [auth 8]IPR000690Matrin/U1-C, C2H2-type zinc fingerDomain
L [auth 9]IPR021966Splicing factor SF3a60 binding domainDomain
L [auth 9]IPR031774SF3A3 domainDomain
L [auth 9]IPR024598Splicing factor SF3a60 /Prp9 subunit, C-terminalDomain
L [auth 9]IPR025086SDE2/SF3A3, SAP domainDomain
L [auth 9]IPR000690Matrin/U1-C, C2H2-type zinc fingerDomain
M [auth B2]IPR006568PSP, proline-richDomain
M [auth B2]IPR007180Domain of unknown function DUF382Domain
M [auth B2]IPR003034SAP domainDomain
N [auth B5]IPR017089Splicing factor 3B, subunit 5Family
N [auth B5]IPR009846Splicing factor 3B subunit 5/RDS3 complex subunit 10Family
P [auth B3]IPR018846Cleavage/polyadenylation specificity factor, A subunit, N-terminalDomain
P [auth B3]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
P [auth B3]IPR004871Cleavage/polyadenylation specificity factor, A subunit, C-terminalDomain
P [auth B3]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
Q [auth BP]IPR005345PHF5-likeFamily
R [auth B1]IPR016024Armadillo-type foldHomologous Superfamily
R [auth B1]IPR011989Armadillo-like helicalHomologous Superfamily
R [auth B1]IPR015016Splicing factor 3B subunit 1Domain
R [auth B1]IPR038737Splicing factor 3B subunit 1-likeFamily
S [auth B6]IPR000504RNA recognition motif domainDomain
S [auth B6]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
S [auth B6]IPR034150SF3B6, RNA recognition motifDomain
S [auth B6]IPR035979RNA-binding domain superfamilyHomologous Superfamily
B [auth 67]IPR001163Sm domain, eukaryotic/archaea-typeDomain
B [auth 67]IPR047575Sm domainDomain
B [auth 67]IPR044641Sm-like protein Lsm7/SmGFamily
B [auth 67]IPR010920LSM domain superfamilyHomologous Superfamily
B [auth 67]IPR017132Sm-like protein Lsm7Family
EA [auth 42],
FB [auth 52],
T [auth 22]		IPR001163Sm domain, eukaryotic/archaea-typeDomain
EA [auth 42],
FB [auth 52],
T [auth 22]		IPR047575Sm domainDomain
EA [auth 42],
FB [auth 52],
T [auth 22]		IPR027248Small nuclear ribonucleoprotein Sm D2Family
EA [auth 42],
FB [auth 52],
T [auth 22]		IPR010920LSM domain superfamilyHomologous Superfamily
U [auth 2B]IPR034562U2 small nuclear ribonucleoprotein B'', RNA recognition motif 2Domain
U [auth 2B]IPR000504RNA recognition motif domainDomain
U [auth 2B]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
U [auth 2B]IPR035979RNA-binding domain superfamilyHomologous Superfamily
U [auth 2B]IPR034564U2 small nuclear ribonucleoprotein B'', RNA recognition motif 1Domain
CB [auth 5f],
FA [auth 4f],
V [auth 2f]		IPR016487Sm-like protein Lsm6/SmFFamily
CB [auth 5f],
FA [auth 4f],
V [auth 2f]		IPR034100Small nuclear ribonucleoprotein FFamily
CB [auth 5f],
FA [auth 4f],
V [auth 2f]		IPR001163Sm domain, eukaryotic/archaea-typeDomain
CB [auth 5f],
FA [auth 4f],
V [auth 2f]		IPR047575Sm domainDomain
CB [auth 5f],
FA [auth 4f],
V [auth 2f]		IPR010920LSM domain superfamilyHomologous Superfamily
EB [auth 5b],
HA [auth 4b],
W [auth 2b]		IPR001163Sm domain, eukaryotic/archaea-typeDomain
EB [auth 5b],
HA [auth 4b],
W [auth 2b]		IPR017131Small ribonucleoprotein associated, SmB/SmNFamily
EB [auth 5b],
HA [auth 4b],
W [auth 2b]		IPR047575Sm domainDomain
EB [auth 5b],
HA [auth 4b],
W [auth 2b]		IPR010920LSM domain superfamilyHomologous Superfamily
BB [auth 53],
GA [auth 43],
X [auth 23]		IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3Family
BB [auth 53],
GA [auth 43],
X [auth 23]		IPR034099Small nuclear ribonucleoprotein Sm D3Family
BB [auth 53],
GA [auth 43],
X [auth 23]		IPR001163Sm domain, eukaryotic/archaea-typeDomain
BB [auth 53],
GA [auth 43],
X [auth 23]		IPR047575Sm domainDomain
BB [auth 53],
GA [auth 43],
X [auth 23]		IPR010920LSM domain superfamilyHomologous Superfamily
GB [auth 5g],
IA [auth 4g],
Y [auth 2g]		IPR044641Sm-like protein Lsm7/SmGFamily
GB [auth 5g],
IA [auth 4g],
Y [auth 2g]		IPR034098Small nuclear ribonucleoprotein GFamily
GB [auth 5g],
IA [auth 4g],
Y [auth 2g]		IPR001163Sm domain, eukaryotic/archaea-typeDomain
GB [auth 5g],
IA [auth 4g],
Y [auth 2g]		IPR047575Sm domainDomain
GB [auth 5g],
IA [auth 4g],
Y [auth 2g]		IPR010920LSM domain superfamilyHomologous Superfamily
DA [auth 4e],
HB [auth 5e],
Z [auth 2e]		IPR027078Small nuclear ribonucleoprotein EFamily
DA [auth 4e],
HB [auth 5e],
Z [auth 2e]		IPR001163Sm domain, eukaryotic/archaea-typeDomain
DA [auth 4e],
HB [auth 5e],
Z [auth 2e]		IPR047575Sm domainDomain
DA [auth 4e],
HB [auth 5e],
Z [auth 2e]		IPR010920LSM domain superfamilyHomologous Superfamily
AA [auth 21],
CA [auth 41],
DB [auth 51]		IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3Family
AA [auth 21],
CA [auth 41],
DB [auth 51]		IPR034102Small nuclear ribonucleoprotein D1Domain
AA [auth 21],
CA [auth 41],
DB [auth 51]		IPR001163Sm domain, eukaryotic/archaea-typeDomain
AA [auth 21],
CA [auth 41],
DB [auth 51]		IPR047575Sm domainDomain
AA [auth 21],
CA [auth 41],
DB [auth 51]		IPR010920LSM domain superfamilyHomologous Superfamily
BA [auth 2A]IPR001611Leucine-rich repeatRepeat
BA [auth 2A]IPR003603U2A'/phosphoprotein 32 family A, C-terminalDomain
BA [auth 2A]IPR032675Leucine-rich repeat domain superfamilyHomologous Superfamily
JA [auth B]IPR048863Pre-mRNA-splicing helicase BRR2-like, plug domainDomain
JA [auth B]IPR041094Brr2, N-terminal helicase PWI domainDomain
JA [auth B]IPR004179Sec63 domainDomain
JA [auth B]IPR014756Immunoglobulin E-setHomologous Superfamily
JA [auth B]IPR011545DEAD/DEAH box helicase domainDomain
JA [auth B]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
JA [auth B]IPR001650Helicase, C-terminal domain-likeDomain
JA [auth B]IPR036388Winged helix-like DNA-binding domain superfamilyHomologous Superfamily
JA [auth B]IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
JA [auth B]IPR036390Winged helix DNA-binding domain superfamilyHomologous Superfamily
JA [auth B]IPR035892C2 domain superfamilyHomologous Superfamily
C [auth 62]IPR001163Sm domain, eukaryotic/archaea-typeDomain
C [auth 62]IPR047575Sm domainDomain
C [auth 62]IPR010920LSM domain superfamilyHomologous Superfamily
C [auth 62]IPR016654U6 snRNA-associated Sm-like protein LSm2Family
KA [auth W]IPR029000Cyclophilin-like domain superfamilyHomologous Superfamily
KA [auth W]IPR024936Cyclophilin-type peptidyl-prolyl cis-trans isomeraseFamily
KA [auth W]IPR002130Cyclophilin-type peptidyl-prolyl cis-trans isomerase domainDomain
KA [auth W]IPR020892Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved siteConserved Site
LA [auth G]IPR001650Helicase, C-terminal domain-likeDomain
LA [auth G]IPR000629ATP-dependent RNA helicase DEAD-box, conserved siteConserved Site
LA [auth G]IPR014001Helicase superfamily 1/2, ATP-binding domainDomain
LA [auth G]IPR014014RNA helicase, DEAD-box type, Q motifDomain
LA [auth G]IPR011545DEAD/DEAH box helicase domainDomain
LA [auth G]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
MA [auth J]IPR027104U4/U6 small nuclear ribonucleoprotein Prp3Family
MA [auth J]IPR002483PWI domainDomain
MA [auth J]IPR013881Pre-mRNA-splicing factor 3 domainDomain
MA [auth J]IPR036483PWI domain superfamilyHomologous Superfamily
MA [auth J]IPR010541Small nuclear ribonucleoprotein Prp3, C-terminal domainDomain
NA [auth L]IPR042239Nop, C-terminal domainHomologous Superfamily
NA [auth L]IPR019175Prp31 C-terminalDomain
NA [auth L]IPR002687Nop domainDomain
NA [auth L]IPR012976NOSICDomain
NA [auth L]IPR027105U4/U6 small nuclear ribonucleoprotein Prp31Family
NA [auth L]IPR036070Nop domain superfamilyHomologous Superfamily
OA [auth F]IPR019775WD40 repeat, conserved siteConserved Site
OA [auth F]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
OA [auth F]IPR036285PRP4-like superfamilyHomologous Superfamily
OA [auth F]IPR014906Pre-mRNA processing factor 4 (PRP4)-likeDomain
OA [auth F]IPR001680WD40 repeatRepeat
OA [auth F]IPR020472G-protein beta WD-40 repeatRepeat
OA [auth F]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
PA [auth N]IPR011990Tetratricopeptide-like helical domain superfamilyHomologous Superfamily
PA [auth N]IPR019734Tetratricopeptide repeatRepeat
PA [auth N]IPR010491PRP1 splicing factor, N-terminalDomain
PA [auth N]IPR003107HAT (Half-A-TPR) repeatRepeat
PA [auth N]IPR045075Pre-mRNA-splicing factor Syf1-likeFamily
QA [auth A]IPR012984PROCT domainDomain
QA [auth A]IPR012591PRO8NT domainDomain
QA [auth A]IPR019580Pre-mRNA-processing-splicing factor 8, U6-snRNA-bindingDomain
QA [auth A]IPR027652Pre-mRNA-processing-splicing factor 8Family
QA [auth A]IPR043172Prp8 RNase domain IV, palm regionHomologous Superfamily
QA [auth A]IPR012592PROCN domainDomain
QA [auth A]IPR012337Ribonuclease H-like superfamilyHomologous Superfamily
QA [auth A]IPR043173Prp8 RNase domain IV, fingers regionHomologous Superfamily
QA [auth A]IPR021983PRP8 domain IV coreDomain
QA [auth A]IPR019581Pre-mRNA-processing-splicing factor 8, U5-snRNA-bindingDomain
QA [auth A]IPR037518MPN domainDomain
QA [auth A]IPR019582RNA recognition motif, spliceosomal PrP8Domain
QA [auth A]IPR042516Pre-mRNA-processing-splicing factor 8, U5-snRNA-binding domain superfamilyHomologous Superfamily
QA [auth A]IPR000555JAB1/MPN/MOV34 metalloenzyme domainDomain
RA [auth U]IPR028889Ubiquitin specific protease domainDomain
RA [auth U]IPR033809USP39Family
RA [auth U]IPR013083Zinc finger, RING/FYVE/PHD-typeHomologous Superfamily
RA [auth U]IPR001607Zinc finger, UBP-typeDomain
RA [auth U]IPR001394Peptidase C19, ubiquitin carboxyl-terminal hydrolaseDomain
RA [auth U]IPR038765Papain-like cysteine peptidase superfamilyHomologous Superfamily
SA [auth S]IPR045347HIND motifConserved Site
SA [auth S]IPR005011SNU66/SART1 familyFamily
TA [auth C]IPR005517Translation elongation factor EFG/EF2, domain IVDomain
TA [auth C]IPR000795Translational (tr)-type GTP-binding domainDomain
TA [auth C]IPR035647EF-G domain III/V-likeHomologous Superfamily
TA [auth C]IPR035655116kDa U5 small nuclear ribonucleoprotein component, C-terminalDomain
TA [auth C]IPR041095Elongation Factor G, domain IIDomain
TA [auth C]IPR004161Translation elongation factor EFTu-like, domain 2Domain
TA [auth C]IPR009000Translation protein, beta-barrel domain superfamilyHomologous Superfamily
TA [auth C]IPR020568Ribosomal protein uS5 domain 2-type superfamilyHomologous Superfamily
TA [auth C]IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
TA [auth C]IPR014721Small ribosomal subunit protein uS5 domain 2-type fold, subgroupHomologous Superfamily
TA [auth C]IPR031950116kDa U5 small nuclear ribonucleoprotein component, N-terminalDomain
TA [auth C]IPR000640Elongation factor EFG, domain V-likeDomain
TA [auth C]IPR044121Snu114, GTP-binding domainDomain
TA [auth C]IPR005225Small GTP-binding protein domainDomain
D [auth 63]IPR040002U6 snRNA-associated Sm-like protein Lsm3Family
D [auth 63]IPR001163Sm domain, eukaryotic/archaea-typeDomain
D [auth 63]IPR047575Sm domainDomain
D [auth 63]IPR010920LSM domain superfamilyHomologous Superfamily
D [auth 63]IPR034105Sm-like protein Lsm3Domain
UA [auth M]IPR002415H/ACA ribonucleoprotein complex, subunit Nhp2-likeFamily
UA [auth M]IPR029064Ribosomal protein eL30-like superfamilyHomologous Superfamily
UA [auth M]IPR018492Ribosomal protein eL8/Nhp2 familyFamily
UA [auth M]IPR004038Ribosomal protein eL8/eL30/eS12/Gadd45Domain
UA [auth M]IPR004037Large ribosomal subunit protein eL8-like, conserved siteConserved Site
VA [auth D]IPR004123Dim1 familyFamily
VA [auth D]IPR036249Thioredoxin-like superfamilyHomologous Superfamily
YA [auth 7]IPR045146Splicing factor 3A subunit 1Family
YA [auth 7]IPR035967SWAP/Surp superfamilyHomologous Superfamily
YA [auth 7]IPR000061SWAP/SurpDomain
YA [auth 7]IPR000626Ubiquitin-like domainDomain
YA [auth 7]IPR035563Splicing factor 3A subunit 1, ubiquitin domainDomain
YA [auth 7]IPR029071Ubiquitin-like domain superfamilyHomologous Superfamily
YA [auth 7]IPR022030Splicing factor 3A subunit 1, conserved domainDomain
E [auth 68]IPR001163Sm domain, eukaryotic/archaea-typeDomain
E [auth 68]IPR047575Sm domainDomain
E [auth 68]IPR034103Sm-like protein Lsm8Domain
E [auth 68]IPR010920LSM domain superfamilyHomologous Superfamily
E [auth 68]IPR044642U6 snRNA-associated Sm-like protein Lsm1/8Family
F [auth 64]IPR001163Sm domain, eukaryotic/archaea-typeDomain
F [auth 64]IPR027141Like-Sm (LSM) domain containing protein, LSm4/SmD1/SmD3Family
F [auth 64]IPR047575Sm domainDomain
F [auth 64]IPR034101Sm-like protein Lsm4Domain
F [auth 64]IPR010920LSM domain superfamilyHomologous Superfamily
G [auth 65]IPR001163Sm domain, eukaryotic/archaea-typeDomain
G [auth 65]IPR047575Sm domainDomain
G [auth 65]IPR033871Sm-like protein LSm5Domain
G [auth 65]IPR010920LSM domain superfamilyHomologous Superfamily
H [auth E]IPR019775WD40 repeat, conserved siteConserved Site
H [auth E]IPR036322WD40-repeat-containing domain superfamilyHomologous Superfamily
H [auth E]IPR001680WD40 repeatRepeat
H [auth E]IPR020472G-protein beta WD-40 repeatRepeat
H [auth E]IPR015943WD40/YVTN repeat-like-containing domain superfamilyHomologous Superfamily
I [auth B4]IPR034159SF3B4, RNA recognition motif 2Domain
I [auth B4]IPR000504RNA recognition motif domainDomain
I [auth B4]IPR012677Nucleotide-binding alpha-beta plait domain superfamilyHomologous Superfamily
I [auth B4]IPR035979RNA-binding domain superfamilyHomologous Superfamily
I [auth B4]IPR034158SF3B4, RNA recognition motif 1Domain

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
A [auth 66]Pharos:  P62312
K [auth 8]Pharos:  Q15428
L [auth 9]Pharos:  Q12874
M [auth B2]Pharos:  Q13435
N [auth B5]Pharos:  Q9BWJ5
P [auth B3]Pharos:  Q15393
Q [auth BP]Pharos:  Q7RTV0
S [auth B6]Pharos:  Q9Y3B4
B [auth 67]Pharos:  Q9UK45
EA [auth 42],
FB [auth 52],
T [auth 22]		Pharos:  P62316
U [auth 2B]Pharos:  P08579
CB [auth 5f],
FA [auth 4f],
V [auth 2f]		Pharos:  P62306
BB [auth 53],
GA [auth 43],
X [auth 23]		Pharos:  P62318
GB [auth 5g],
IA [auth 4g],
Y [auth 2g]		Pharos:  P62308
DA [auth 4e],
HB [auth 5e],
Z [auth 2e]		Pharos:  P62304
C [auth 62]Pharos:  Q9Y333
KA [auth W]Pharos:  O43447
LA [auth G]Pharos:  Q9BUQ8
OA [auth F]Pharos:  O43172
PA [auth N]Pharos:  O94906
QA [auth A]Pharos:  Q6P2Q9
RA [auth U]Pharos:  Q53GS9
TA [auth C]Pharos:  Q15029
D [auth 63]Pharos:  P62310
VA [auth D]Pharos:  P83876
YA [auth 7]Pharos:  Q15459
E [auth 68]Pharos:  O95777
G [auth 65]Pharos:  Q9Y4Y9
H [auth E]Pharos:  Q96DI7
I [auth B4]Pharos:  Q15427