8Q4D | pdb_00008q4d

IstA-IstB(E167Q) Strand Transfer Complex

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
X	DNA_topoisoIV	e8q4dX1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: DNA_topoisoIV	ECOD (v295.2)
W	DNA_topoisoIV	e8q4dW1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: DNA_topoisoIV	ECOD (v295.2)
V	DNA_topoisoIV	e8q4dV1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: DNA_topoisoIV	ECOD (v295.2)
U	DNA_topoisoIV	e8q4dU1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: DNA_topoisoIV	ECOD (v295.2)
T	DNA_topoisoIV	e8q4dT1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: DNA_topoisoIV	ECOD (v295.2)
S	DNA_topoisoIV	e8q4dS1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: DNA_topoisoIV	ECOD (v295.2)
R	DNA_topoisoIV	e8q4dR1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: DNA_topoisoIV	ECOD (v295.2)
Q	DNA_topoisoIV	e8q4dQ1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: DNA_topoisoIV	ECOD (v295.2)
P	DNA_topoisoIV	e8q4dP1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: DNA_topoisoIV	ECOD (v295.2)
O	DNA_topoisoIV	e8q4dO1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: DNA_topoisoIV	ECOD (v295.2)
N	DNA_topoisoIV	e8q4dN1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: DNA_topoisoIV	ECOD (v295.2)
M	DNA_topoisoIV	e8q4dM1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: DNA_topoisoIV	ECOD (v295.2)
L	DNA_topoisoIV	e8q4dL1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: DNA_topoisoIV	ECOD (v295.2)
K	DNA_topoisoIV	e8q4dK1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: DNA_topoisoIV	ECOD (v295.2)
J	DNA_topoisoIV	e8q4dJ1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: DNA_topoisoIV	ECOD (v295.2)
I	DNA_topoisoIV	e8q4dI1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: DNA_topoisoIV	ECOD (v295.2)
H	DNA_topoisoIV	e8q4dH1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: DNA_topoisoIV	ECOD (v295.2)
G	DNA_topoisoIV	e8q4dG1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: DNA_topoisoIV	ECOD (v295.2)
F	DNA_topoisoIV	e8q4dF1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: DNA_topoisoIV	ECOD (v295.2)
E	Tropomyosin	e8q4dE01	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Tropomyosin	ECOD (v295.2)
D	DNA_topoisoIV	e8q4dD1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: DNA_topoisoIV	ECOD (v295.2)
C	DNA_topoisoIV	e8q4dC1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: DNA_topoisoIV	ECOD (v295.2)
B	DNA_topoisoIV	e8q4dB1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: DNA_topoisoIV	ECOD (v295.2)
A	Tropomyosin	e8q4dA01	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Tropomyosin	ECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
AA [auth c], DA [auth f]	DNA (58-MER) / target-reverse complement	-	-	-
CA [auth e], Z [auth b]	DNA (58-MER) / TIR non-transferred strand	-	-	-
BA [auth d], Y [auth a]	DNA (118-MER) / TIR-transferred strand	-	-	-
E, F, G, H, I E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	Insertion sequence IS5376 putative ATP-binding protein	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding	nucleobase-containing compound metabolic process DNA replication metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process nucleic acid metabolic process	-
A, B, C, D	Putative transposase for insertion sequence element IS5376	DNA binding binding nucleic acid binding catalytic activity, acting on DNA catalytic activity, acting on a nucleic acid DNA strand exchange activity catalytic activity	nucleobase-containing compound metabolic process metabolic process cellular process primary metabolic process DNA metabolic process macromolecule metabolic process DNA integration nucleic acid metabolic process transposition	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E, F, G, H, I E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR001270	ClpA/B family	Family
E, F, G, H, I E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR028350	DNA replication protein DnaC/insertion sequence IstB-like	Family
E, F, G, H, I E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR003593	AAA+ ATPase domain	Domain
E, F, G, H, I E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR002611	IstB-like ATP-binding domain	Domain
E, F, G, H, I E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR047661	Insertion sequence IS21-like ATPase IstB	Family
E, F, G, H, I E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A, B, C, D	IPR036397	Ribonuclease H superfamily	Homologous Superfamily
A, B, C, D	IPR017894	HTH domain, IS21 transposase-type	Domain
A, B, C, D	IPR001584	Integrase, catalytic core	Domain
A, B, C, D	IPR006120	Resolvase, HTH domain	Domain
A, B, C, D	IPR012337	Ribonuclease H-like superfamily	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.