Annotations: 8Q05

Chlorella sorokiniana Rubisco with CsLinker (alpha3-alpha4) bound: D4 symmetry expanded

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Q [auth X]	DNA_topoisoIV	e8q05X1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: DNA_topoisoIV	ECOD (v295.2)
O [auth T]	DNA_topoisoIV	e8q05T1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: DNA_topoisoIV	ECOD (v295.2)
M [auth Q]	DNA_topoisoIV	e8q05Q1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: DNA_topoisoIV	ECOD (v295.2)
K [auth M]	DNA_topoisoIV	e8q05M1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: DNA_topoisoIV	ECOD (v295.2)
I [auth J]	DNA_topoisoIV	e8q05J1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: DNA_topoisoIV	ECOD (v295.2)
G	DNA_topoisoIV	e8q05G1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: DNA_topoisoIV	ECOD (v295.2)
E [auth D]	DNA_topoisoIV	e8q05D1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: DNA_topoisoIV	ECOD (v295.2)
C [auth P]	DNA_topoisoIV	e8q05P1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: DNA_topoisoIV	ECOD (v295.2)
P [auth W]	DNA_topoisoIV	e8q05W1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: DNA_topoisoIV	ECOD (v295.2)
N [auth S]	DNA_topoisoIV	e8q05S1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: DNA_topoisoIV	ECOD (v295.2)
L [auth O]	DNA_topoisoIV	e8q05O1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: DNA_topoisoIV	ECOD (v295.2)
J [auth L]	DNA_topoisoIV	e8q05L1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: DNA_topoisoIV	ECOD (v295.2)
H [auth I]	DNA_topoisoIV	e8q05I1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: DNA_topoisoIV	ECOD (v295.2)
F	DNA_topoisoIV	e8q05F1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: DNA_topoisoIV	ECOD (v295.2)
D [auth C]	DNA_topoisoIV	e8q05C1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: DNA_topoisoIV	ECOD (v295.2)
B [auth A]	DNA_topoisoIV	e8q05A1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: DNA_topoisoIV	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
C [auth P], E [auth D], G, I [auth J], K [auth M], C [auth P], E [auth D], G, I [auth J], K [auth M], M [auth Q], O [auth T], Q [auth X]	PF00101	Ribulose bisphosphate carboxylase, small chain (RuBisCO_small)	Ribulose bisphosphate carboxylase, small chain		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C [auth P], E [auth D], G, I [auth J], K [auth M], C [auth P], E [auth D], G, I [auth J], K [auth M], M [auth Q], O [auth T], Q [auth X]	Ribulose bisphosphate carboxylase small subunit, chloroplastic	ribulose-bisphosphate carboxylase activity carboxy-lyase activity lyase activity catalytic activity carbon-carbon lyase activity L-amino acid transmembrane transporter activity amino acid transmembrane transporter activity transporter activity carboxylic acid transmembrane transporter activity transmembrane transporter activity	metabolic compound salvage biosynthetic process metabolic process cellular process photorespiration carbohydrate metabolic process photosynthesis reductive pentose-phosphate cycle carbohydrate biosynthetic process photosynthesis, dark reaction primary metabolic process carbon fixation	cellular anatomical structure membrane membrane-bounded organelle intracellular organelle intracellular anatomical structure plastid organelle cytoplasm intracellular membrane-bounded organelle chloroplast
B [auth A], D [auth C], F, H [auth I], J [auth L], B [auth A], D [auth C], F, H [auth I], J [auth L], L [auth O], N [auth S], P [auth W]	Ribulose bisphosphate carboxylase large chain	cation binding magnesium ion binding ion binding binding metal ion binding small molecule binding ribulose-bisphosphate carboxylase activity carboxy-lyase activity lyase activity catalytic activity carbon-carbon lyase activity monooxygenase activity oxidoreductase activity	metabolic compound salvage biosynthetic process metabolic process cellular process photorespiration carbohydrate metabolic process photosynthesis reductive pentose-phosphate cycle carbohydrate biosynthetic process photosynthesis, dark reaction primary metabolic process carbon fixation	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure plastid organelle cytoplasm intracellular membrane-bounded organelle chloroplast
A [auth Z]	CsLinker (alpha3-alpha4)	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C [auth P], E [auth D], G, I [auth J], K [auth M], C [auth P], E [auth D], G, I [auth J], K [auth M], M [auth Q], O [auth T], Q [auth X]	IPR013766	Thioredoxin domain	Domain
C [auth P], E [auth D], G, I [auth J], K [auth M], C [auth P], E [auth D], G, I [auth J], K [auth M], M [auth Q], O [auth T], Q [auth X]	IPR000894	Ribulose bisphosphate carboxylase small subunit, domain	Domain
C [auth P], E [auth D], G, I [auth J], K [auth M], C [auth P], E [auth D], G, I [auth J], K [auth M], M [auth Q], O [auth T], Q [auth X]	IPR036385	Ribulose bisphosphate carboxylase, small subunit superfamily	Homologous Superfamily
C [auth P], E [auth D], G, I [auth J], K [auth M], C [auth P], E [auth D], G, I [auth J], K [auth M], M [auth Q], O [auth T], Q [auth X]	IPR024681	Ribulose bisphosphate carboxylase, small subunit	Family
C [auth P], E [auth D], G, I [auth J], K [auth M], C [auth P], E [auth D], G, I [auth J], K [auth M], M [auth Q], O [auth T], Q [auth X]	IPR013057	Amino acid transporter, transmembrane domain	Domain
C [auth P], E [auth D], G, I [auth J], K [auth M], C [auth P], E [auth D], G, I [auth J], K [auth M], M [auth Q], O [auth T], Q [auth X]	IPR017937	Thioredoxin, conserved site	Conserved Site
C [auth P], E [auth D], G, I [auth J], K [auth M], C [auth P], E [auth D], G, I [auth J], K [auth M], M [auth Q], O [auth T], Q [auth X]	IPR036249	Thioredoxin-like superfamily	Homologous Superfamily
B [auth A], D [auth C], F, H [auth I], J [auth L], B [auth A], D [auth C], F, H [auth I], J [auth L], L [auth O], N [auth S], P [auth W]	IPR020888	Ribulose bisphosphate carboxylase large subunit, type I	Family
B [auth A], D [auth C], F, H [auth I], J [auth L], B [auth A], D [auth C], F, H [auth I], J [auth L], L [auth O], N [auth S], P [auth W]	IPR036376	Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily	Homologous Superfamily
B [auth A], D [auth C], F, H [auth I], J [auth L], B [auth A], D [auth C], F, H [auth I], J [auth L], L [auth O], N [auth S], P [auth W]	IPR020878	Ribulose bisphosphate carboxylase, large chain, active site	Active Site
B [auth A], D [auth C], F, H [auth I], J [auth L], B [auth A], D [auth C], F, H [auth I], J [auth L], L [auth O], N [auth S], P [auth W]	IPR000685	Ribulose bisphosphate carboxylase, large subunit, C-terminal	Domain
B [auth A], D [auth C], F, H [auth I], J [auth L], B [auth A], D [auth C], F, H [auth I], J [auth L], L [auth O], N [auth S], P [auth W]	IPR033966	RuBisCO	Family
B [auth A], D [auth C], F, H [auth I], J [auth L], B [auth A], D [auth C], F, H [auth I], J [auth L], L [auth O], N [auth S], P [auth W]	IPR017443	Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal	Domain
B [auth A], D [auth C], F, H [auth I], J [auth L], B [auth A], D [auth C], F, H [auth I], J [auth L], L [auth O], N [auth S], P [auth W]	IPR036422	RuBisCO large subunit, N-terminal domain superfamily	Homologous Superfamily

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

8Q05 | pdb_00008q05

Chlorella sorokiniana Rubisco with CsLinker (alpha3-alpha4) bound: D4 symmetry expanded

External Resource: Annotation

Domain Annotation: ECOD Classification ECOD Database Homepage

Protein Family Annotation Pfam Database Homepage

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage