Cryo-EM structure of 30S ribosome with cleaved AP-mRNA bound complex-II
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| B | SCOP2B Superfamily | SIS domain/Ribosomal protein S2-like | 8063838 | 3001397 | SCOP2B (2022-06-29) |
| D | SCOP2B Superfamily | Alpha-L RNA-binding motif | 8083400 | 3001473 | SCOP2B (2022-06-29) |
| F | SCOP2B Superfamily | Ribosomal protein S6 | 8066495 | 3001323 | SCOP2B (2022-06-29) |
| G | SCOP2B Superfamily | Ribosomal protein S7 | 8077979 | 3000799 | SCOP2B (2022-06-29) |
| H | SCOP2B Superfamily | Ribosomal protein S8 | 8079059 | 3000709 | SCOP2B (2022-06-29) |
| I | SCOP2B Superfamily | Ribosomal protein S5 domain 2-like | 8082661 | 3000100 | SCOP2B (2022-06-29) |
| J | SCOP2B Superfamily | Ribosomal protein S10 | 8102681 | 3001336 | SCOP2B (2022-06-29) |
| K | SCOP2B Superfamily | Translational machinery components | 8035368 | 3000571 | SCOP2B (2022-06-29) |
| L | SCOP2B Superfamily | Nucleic acid-binding proteins | 8106545 | 3000135 | SCOP2B (2022-06-29) |
| M | SCOP2B Superfamily | S13-like H2TH domain | 8098358 | 3000053 | SCOP2B (2022-06-29) |
| N [auth O] | SCOP2B Superfamily | S15/NS1 RNA-binding domain | 8032375 | 3001284 | SCOP2B (2022-06-29) |
| O [auth P] | SCOP2B Superfamily | Ribosomal protein S16 | 8106547 | 3000680 | SCOP2B (2022-06-29) |
| P [auth Q] | SCOP2B Superfamily | Nucleic acid-binding proteins | 8059276 | 3000135 | SCOP2B (2022-06-29) |
| R [auth S] | SCOP2B Superfamily | Ribosomal protein S19 | 8103915 | 3000686 | SCOP2B (2022-06-29) |
| T [auth X] | SCOP2B Superfamily | Ribosomal protein S21 | 8053090 | 3002159 | SCOP2B (2022-06-29) |
| V [auth N] | SCOP2B Superfamily | Glucocorticoid receptor-like (DNA-binding domain) | 8052568 | 3000068 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | DNA_topoisoIV | e8k4eB1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| C | DNA_topoisoIV | e8k4eC1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| D | DNA_topoisoIV | e8k4eD1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| E | DNA_topoisoIV | e8k4eE1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| F | DNA_topoisoIV | e8k4eF1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| G | DNA_topoisoIV | e8k4eG1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| H | DNA_topoisoIV | e8k4eH1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| I | DNA_topoisoIV | e8k4eI1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| J | DNA_topoisoIV | e8k4eJ1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| K | DNA_topoisoIV | e8k4eK1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| L | DNA_topoisoIV | e8k4eL1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| M | DNA_topoisoIV | e8k4eM1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| N [auth O] | DNA_topoisoIV | e8k4eO1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| O [auth P] | DNA_topoisoIV | e8k4eP1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| P [auth Q] | DNA_topoisoIV | e8k4eQ1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| Q [auth R] | DNA_topoisoIV | e8k4eR1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| R [auth S] | DNA_topoisoIV | e8k4eS1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| S [auth T] | DNA_topoisoIV | e8k4eT1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| T [auth X] | DNA_topoisoIV | e8k4eX1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
| V [auth N] | DNA_topoisoIV | e8k4eN1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: acid protease | F: DNA_topoisoIV | ECOD (v294.2) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF00318 | Ribosomal protein S2 (Ribosomal_S2) | Ribosomal protein S2 | - | Family | |
| PF07650 | KH domain (KH_2) | KH domain | Domain | ||
| PF00189 | Ribosomal protein S3, C-terminal domain (Ribosomal_S3_C) | Ribosomal protein S3, C-terminal domain | This family contains a central domain Pfam:PF00013, hence the amino and carboxyl terminal domains are stored separately. This is a minimal carboxyl-terminal domain. Some are much longer. | Domain | |
| PF00163 | Ribosomal protein S4/S9 N-terminal domain (Ribosomal_S4) | Ribosomal protein S4/S9 N-terminal domain | - | Family | |
| PF01479 | S4 domain (S4) | S4 domain | The S4 domain is a small domain consisting of 60-65 amino acid residues that was detected in the bacterial ribosomal protein S4, eukaryotic ribosomal S9, two families of pseudouridine synthases, a novel family of predicted RNA methylases, a yeast pro ... | Domain | |
| PF03719 | Ribosomal protein S5, C-terminal domain (Ribosomal_S5_C) | Ribosomal protein S5, C-terminal domain | Domain | ||
| PF00333 | Ribosomal protein S5, N-terminal domain (Ribosomal_S5) | Ribosomal protein S5, N-terminal domain | Domain | ||
| PF01250 | Ribosomal protein S6 (Ribosomal_S6) | Ribosomal protein S6 | Domain | ||
| PF00410 | Ribosomal protein S8 (Ribosomal_S8) | Ribosomal protein S8 | Domain | ||
| PF00380 | Ribosomal protein S9/S16 (Ribosomal_S9) | Ribosomal protein S9/S16 | - | Family | |
| PF00338 | Ribosomal protein S10p/S20e (Ribosomal_S10) | Ribosomal protein S10p/S20e | This family includes small ribosomal subunit S10 from prokaryotes and S20 from eukaryotes. | Domain | |
| PF00411 | Ribosomal protein S11 (Ribosomal_S11) | Ribosomal protein S11 | - | Family | |
| PF00164 | Ribosomal protein S12/S23 (Ribosom_S12_S23) | Ribosomal protein S12/S23 | This protein is known as S12 in bacteria and archaea and S23 in eukaryotes. | Domain | |
| PF00416 | Ribosomal protein S13/S18 (Ribosomal_S13) | Ribosomal protein S13/S18 | - | Family | |
| N [auth O] | PF00312 | Ribosomal protein S15 (Ribosomal_S15) | Ribosomal protein S15 | Domain | |
| O [auth P] | PF00886 | Ribosomal protein S16 (Ribosomal_S16) | Ribosomal protein S16 | - | Family |
| P [auth Q] | PF00366 | Ribosomal protein S17 (Ribosomal_S17) | Ribosomal protein S17 | Domain | |
| Q [auth R] | PF01084 | Ribosomal protein S18 (Ribosomal_S18) | Ribosomal protein S18 | - | Family |
| R [auth S] | PF00203 | Ribosomal protein S19 (Ribosomal_S19) | Ribosomal protein S19 | Domain | |
| S [auth T] | PF01649 | Ribosomal protein S20 (Ribosomal_S20p) | Ribosomal protein S20 | - | Family |
| V [auth N] | PF00253 | Ribosomal protein S14p/S29e (Ribosomal_S14) | Ribosomal protein S14p/S29e | - | Family |














