8K23

ICP1 Csy-dsDNA-Cas1-Cas2/3 complex (fully assembled form) composited structure with C1 symmetry

External Resource: Annotation

Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B [auth C], T [auth c]	PF09614	CRISPR-associated protein (Cas_Csy2) (Cas_Csy2)	CRISPR-associated protein (Cas_Csy2)	-	Family
C [auth D], D [auth E], U [auth d], V [auth e]	PF01867	CRISPR associated protein Cas1 (Cas_Cas1)	CRISPR associated protein Cas1	-	Family
AA [auth k], BA [auth l], CA [auth m], E [auth G], G [auth I], AA [auth k], BA [auth l], CA [auth m], E [auth G], G [auth I], H [auth J], I [auth K], J [auth L], K [auth M], W [auth g], Y [auth i], Z [auth j]	PF09615	CRISPR-associated protein (Cas_Csy3) (Cas_Csy3)	CRISPR-associated protein (Cas_Csy3)	-	Family
O [auth A], R [auth a]	PF22590	CRISPR-associated nuclease/helicase Cas3, C-terminal (Cas3-like_C_2)	CRISPR-associated nuclease/helicase Cas3, C-terminal	This entry represents the C-terminal domain of CRISPR-associated nuclease/helicase Cas3 subtype I-F/YPEST from Pseudomonas aeruginosa (Cas3), a DNA-degradation enzyme that forms part of the CRISPR-Cas bacterial immune system. Cas3 contains a Cas2 dom ...	This entry represents the C-terminal domain of CRISPR-associated nuclease/helicase Cas3 subtype I-F/YPEST from Pseudomonas aeruginosa (Cas3), a DNA-degradation enzyme that forms part of the CRISPR-Cas bacterial immune system. Cas3 contains a Cas2 domain, an HD nuclease domain (Pfam:PF18019), RecA1, RecA2, a long linker region, and a C-terminal domain (this entry). This domain contains two alpha-helices and two six-stranded beta-blades [6].	Domain
F [auth H], X [auth h]	PF09618	CRISPR-associated protein (Cas_Csy4) (Cas_Csy4)	CRISPR-associated protein (Cas_Csy4)	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth B], S [auth b]	Csy1	-	-	-
B [auth C], T [auth c]	Csy2	-	-	-
C [auth D], D [auth E], U [auth d], V [auth e]	Cas1	DNA endonuclease activity endonuclease activity catalytic activity, acting on DNA nuclease activity hydrolase activity, acting on ester bonds catalytic activity, acting on a nucleic acid hydrolase activity catalytic activity DNA nuclease activity DNA binding binding organic cyclic compound binding nucleic acid binding cation binding DNA endonuclease activity endonuclease activity catalytic activity, acting on DNA nuclease activity hydrolase activity, acting on ester bonds catalytic activity, acting on a nucleic acid hydrolase activity catalytic activity DNA nuclease activity DNA binding binding organic cyclic compound binding nucleic acid binding cation binding ion binding metal ion binding small molecule binding	biological process involved in interspecies interaction between organisms response to stimulus response to other organism defense response defense response to symbiont response to external stimulus response to biotic stimulus defense response to virus defense response to other organism response to stress response to external biotic stimulus response to virus maintenance of CRISPR repeat elements chromosome organization biological process involved in interspecies interaction between organisms response to stimulus response to other organism defense response defense response to symbiont response to external stimulus response to biotic stimulus defense response to virus defense response to other organism response to stress response to external biotic stimulus response to virus maintenance of CRISPR repeat elements chromosome organization primary metabolic process DNA metabolic process maintenance of DNA repeat elements nucleic acid metabolic process cellular component organization nucleobase-containing compound metabolic process organelle organization cellular process metabolic process cellular component organization or biogenesis macromolecule metabolic process	-
AA [auth k], BA [auth l], CA [auth m], E [auth G], G [auth I], AA [auth k], BA [auth l], CA [auth m], E [auth G], G [auth I], H [auth J], I [auth K], J [auth L], K [auth M], W [auth g], Y [auth i], Z [auth j]	Csy3	-	-	-
DA [auth p], L [auth P]	RNA (60-MER)	-	-	-
EA [auth q], M [auth Q], P [auth U]	DNA (43-MER)	-	-	-
FA [auth r], N [auth R]	DNA (31-MER)	-	-	-
O [auth A], R [auth a]	HD Cas3-type domain-containing protein	hydrolase activity catalytic activity cation binding ion binding binding metal ion binding small molecule binding	biological process involved in interspecies interaction between organisms response to stimulus response to other organism defense response defense response to symbiont response to external stimulus response to biotic stimulus defense response to virus defense response to other organism response to stress response to external biotic stimulus response to virus	-
Q [auth V]	DNA (5'-D(APTPCPTPTPCPCPCPTPAPTPTPTPAPAPAPTPTPGPCP*T)-3')	-	-	-
F [auth H], X [auth h]	Csy4	endonuclease activity nuclease activity hydrolase activity, acting on ester bonds hydrolase activity catalytic activity	maintenance of CRISPR repeat elements chromosome organization primary metabolic process DNA metabolic process maintenance of DNA repeat elements nucleic acid metabolic process cellular component organization nucleobase-containing compound metabolic process organelle organization cellular process metabolic process cellular component organization or biogenesis macromolecule metabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B [auth C], T [auth c]	IPR013398	Type I-F CRISPR-associated protein Csy2	Family
C [auth D], D [auth E], U [auth d], V [auth e]	IPR002729	CRISPR-associated protein Cas1	Family
C [auth D], D [auth E], U [auth d], V [auth e]	IPR042206	CRISPR-associated endonuclease Cas1, C-terminal domain	Homologous Superfamily
C [auth D], D [auth E], U [auth d], V [auth e]	IPR042211	CRISPR-associated endonuclease Cas1, N-terminal domain	Homologous Superfamily
C [auth D], D [auth E], U [auth d], V [auth e]	IPR050646	CRISPR-associated endonuclease Cas1	Family
C [auth D], D [auth E], U [auth d], V [auth e]	IPR019857	CRISPR-associated protein Cas1, YPEST subtype	Family
AA [auth k], BA [auth l], CA [auth m], E [auth G], G [auth I], AA [auth k], BA [auth l], CA [auth m], E [auth G], G [auth I], H [auth J], I [auth K], J [auth L], K [auth M], W [auth g], Y [auth i], Z [auth j]	IPR013399	Type I-F CRISPR-associated protein Csy3	Family
O [auth A], R [auth a]	IPR038257	CRISPR-associated Cas3-type HD domain superfamily	Homologous Superfamily
O [auth A], R [auth a]	IPR006483	CRISPR-associated Cas3-type, HD domain	Domain
O [auth A], R [auth a]	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
F [auth H], X [auth h]	IPR013396	CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST	Family
F [auth H], X [auth h]	IPR042564	CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.