8K23 | pdb_00008k23

ICP1 Csy-dsDNA-Cas1-Cas2/3 complex (fully assembled form) composited structure with C1 symmetry

External Resource: Annotation

Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
R [auth a]	Ribosomal_L36e	e8k23a1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Ribosomal_L36e	ECOD (v295.2)
O [auth A]	Ribosomal_L36e	e8k23A1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Ribosomal_L36e	ECOD (v295.2)
X [auth h]	Ribosomal_L36e	e8k23h1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Ribosomal_L36e	ECOD (v295.2)
F [auth H]	Ribosomal_L36e	e8k23H1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Ribosomal_L36e	ECOD (v295.2)
Z [auth j]	Ribosomal_L36e	e8k23j1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Ribosomal_L36e	ECOD (v295.2)
Y [auth i]	Ribosomal_L36e	e8k23i1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Ribosomal_L36e	ECOD (v295.2)
W [auth g]	Ribosomal_L36e	e8k23g1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Ribosomal_L36e	ECOD (v295.2)
K [auth M]	Ribosomal_L36e	e8k23M1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Ribosomal_L36e	ECOD (v295.2)
J [auth L]	Ribosomal_L36e	e8k23L1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Ribosomal_L36e	ECOD (v295.2)
I [auth K]	Ribosomal_L36e	e8k23K1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Ribosomal_L36e	ECOD (v295.2)
H [auth J]	Ribosomal_L36e	e8k23J1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Ribosomal_L36e	ECOD (v295.2)
G [auth I]	Ribosomal_L36e	e8k23I1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Ribosomal_L36e	ECOD (v295.2)
E [auth G]	Ribosomal_L36e	e8k23G1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Ribosomal_L36e	ECOD (v295.2)
CA [auth m]	Ribosomal_L36e	e8k23m1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Ribosomal_L36e	ECOD (v295.2)
BA [auth l]	Ribosomal_L36e	e8k23l1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Ribosomal_L36e	ECOD (v295.2)
AA [auth k]	Ribosomal_L36e	e8k23k1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Ribosomal_L36e	ECOD (v295.2)
V [auth e]	Ribosomal_L36e	e8k23e1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Ribosomal_L36e	ECOD (v295.2)
U [auth d]	Ribosomal_L36e	e8k23d1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Ribosomal_L36e	ECOD (v295.2)
D [auth E]	Ribosomal_L36e	e8k23E1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Ribosomal_L36e	ECOD (v295.2)
C [auth D]	7tm_1	e8k23D01	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: 7tm_1	ECOD (v295.2)
T [auth c]	Ribosomal_L36e	e8k23c1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Ribosomal_L36e	ECOD (v295.2)
B [auth C]	Ribosomal_L36e	e8k23C1	A: alpha arrays	X: Hypothetical protein YqbG-like	H: Hypothetical protein YqbG-like	T: alpha/beta-Hydrolases	F: Ribosomal_L36e	ECOD (v295.2)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
F [auth H], X [auth h]	PF09618	CRISPR-associated protein (Cas_Csy4) (Cas_Csy4)	CRISPR-associated protein (Cas_Csy4)	-	Family
AA [auth k], BA [auth l], CA [auth m], E [auth G], G [auth I], AA [auth k], BA [auth l], CA [auth m], E [auth G], G [auth I], H [auth J], I [auth K], J [auth L], K [auth M], W [auth g], Y [auth i], Z [auth j]	PF09615	CRISPR-associated protein (Cas_Csy3) (Cas_Csy3)	CRISPR-associated protein (Cas_Csy3)	-	Family
B [auth C], T [auth c]	PF09614	CRISPR-associated protein (Cas_Csy2) (Cas_Csy2)	CRISPR-associated protein (Cas_Csy2)	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
O [auth A], R [auth a]	HD Cas3-type domain-containing protein	-	-	-
FA [auth r], N [auth R]	DNA (31-MER)	-	-	-
EA [auth q], M [auth Q], P [auth U]	DNA (43-MER)	-	-	-
DA [auth p], L [auth P]	RNA (60-MER)	-	-	-
F [auth H], X [auth h]	Csy4	endonuclease activity nuclease activity catalytic activity, acting on a nucleic acid catalytic activity	maintenance of CRISPR repeat elements chromosome organization primary metabolic process DNA metabolic process maintenance of DNA repeat elements nucleic acid metabolic process cellular component organization nucleobase-containing compound metabolic process organelle organization cellular process metabolic process cellular component organization or biogenesis macromolecule metabolic process	-
AA [auth k], BA [auth l], CA [auth m], E [auth G], G [auth I], AA [auth k], BA [auth l], CA [auth m], E [auth G], G [auth I], H [auth J], I [auth K], J [auth L], K [auth M], W [auth g], Y [auth i], Z [auth j]	Csy3	-	-	-
C [auth D], D [auth E], U [auth d], V [auth e]	Cas1	-	-	-
B [auth C], T [auth c]	Csy2	-	-	-
Q [auth V]	DNA (5'-D(APTPCPTPTPCPCPCPTPAPTPTPTPAPAPAPTPTPGPCP*T)-3')	-	-	-
A [auth B], S [auth b]	Csy1	-	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
F [auth H], X [auth h]	IPR013396	CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST	Family
F [auth H], X [auth h]	IPR042564	CRISPR-associated endoribonuclease Cas6/Csy4, subtype I-F/YPEST superfamily	Homologous Superfamily
AA [auth k], BA [auth l], CA [auth m], E [auth G], G [auth I], AA [auth k], BA [auth l], CA [auth m], E [auth G], G [auth I], H [auth J], I [auth K], J [auth L], K [auth M], W [auth g], Y [auth i], Z [auth j]	IPR013399	Type I-F CRISPR-associated protein Csy3	Family
B [auth C], T [auth c]	IPR013398	Type I-F CRISPR-associated protein Csy2	Family

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.