8IPC
The recombinant NZ-1 Fab complexed with the PDZ tandem fragment of A. aeolicus S2P homolog with the PA14 tag inserted between the residues 181 and 184
SAbDab Antibody Annotation SAbDab Database Homepage
Chain | Chain Class | Chain Subclass | Chain Type | Antigen Name(s) | Provenance Source |
---|---|---|---|---|---|
A [auth H] | Heavy Chain | IGHV5 | - | putative zinc metalloprotease aq_1964 | SAbDab (2024-08-23) |
B [auth L] | Light Chain | IGLV3 | Lambda | putative zinc metalloprotease aq_1964 | SAbDab (2024-08-23) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
C [auth A] | PF13180 | PDZ domain (PDZ_2) | PDZ domain | - | Domain |
C [auth A] | PF17820 | PDZ domain (PDZ_6) | PDZ domain | This entry represents the PDZ domain from a wide variety of proteins. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A [auth H] | The recombinantly-expressed heavy chain of the monoclonal antibody NZ-1 | - | - | - |
B [auth L] | The recombinantly-expressed light chain of the monoclonal antibody NZ-1 | - | - | - |
C [auth A] | Putative zinc metalloprotease aq_1964 |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
C [auth A] | IPR004387 | Peptidase M50, putative membrane-associated zinc metallopeptidase | Family |
C [auth A] | IPR041489 | PDZ domain 6 | Domain |
C [auth A] | IPR008915 | Peptidase M50 | Domain |
C [auth A] | IPR001478 | PDZ domain | Domain |
C [auth A] | IPR036034 | PDZ superfamily | Homologous Superfamily |
Protein Modification Annotation
Modified Residue(s) | ||
---|---|---|
Chain | Residue(s) | Description |
B [auth L] | PCA | Parent Component: GLN :  AA0031 :  2-pyrrolidone-5-carboxylic acid (Gln) MOD:00040 , 2-pyrrolidone-5-carboxylic acid (Glu) MOD:00420 |
C [auth A] | SNN | Parent Component: ASN :  AA0031 , AA0302 , AA0593 :  2-pyrrolidone-5-carboxylic acid (Gln) MOD:00040 , 2-pyrrolidone-5-carboxylic acid (Glu) MOD:00420 , L-aspartimide MOD:00307 , 2-(2-aminosuccinimidyl)pentanedioic acid (Asn) MOD:01940 , 2-(2-aminosuccinimidyl)pentanedioic acid (Asp) MOD:01941 |