8I87
Cryo-EM structure of TIR-APAZ/Ago-gRNA-DNA complex
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
B | F_UNCLASSIFIED | e8i87B2 | A: a/b three-layered sandwiches | X: Middle domain in Argonaute homologs (From Topology) | H: Middle domain in Argonaute homologs (From Topology) | T: Middle domain in Argonaute homologs | F: F_UNCLASSIFIED | ECOD (1.6) |
B | F_UNCLASSIFIED | e8i87B1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: F_UNCLASSIFIED | ECOD (1.6) |
D | F_UNCLASSIFIED | e8i87D2 | A: a/b three-layered sandwiches | X: Middle domain in Argonaute homologs (From Topology) | H: Middle domain in Argonaute homologs (From Topology) | T: Middle domain in Argonaute homologs | F: F_UNCLASSIFIED | ECOD (1.6) |
D | F_UNCLASSIFIED | e8i87D1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: F_UNCLASSIFIED | ECOD (1.6) |
E [auth F] | F_UNCLASSIFIED | e8i87F2 | A: a/b three-layered sandwiches | X: Middle domain in Argonaute homologs (From Topology) | H: Middle domain in Argonaute homologs (From Topology) | T: Middle domain in Argonaute homologs | F: F_UNCLASSIFIED | ECOD (1.6) |
E [auth F] | F_UNCLASSIFIED | e8i87F1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: F_UNCLASSIFIED | ECOD (1.6) |
H [auth T] | F_UNCLASSIFIED | e8i87T2 | A: a/b three-layered sandwiches | X: Middle domain in Argonaute homologs (From Topology) | H: Middle domain in Argonaute homologs (From Topology) | T: Middle domain in Argonaute homologs | F: F_UNCLASSIFIED | ECOD (1.6) |
H [auth T] | F_UNCLASSIFIED | e8i87T1 | A: mixed a+b and a/b | X: Ribonuclease H-like | H: Ribonuclease H-like (From Topology) | T: Ribonuclease H-like | F: F_UNCLASSIFIED | ECOD (1.6) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, C, F [auth G], G [auth O] | PF13676 | TIR domain (TIR_2) | TIR domain | This is a family of Toll-like receptors. | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
---|---|---|---|---|
A, C, F [auth G], G [auth O] | TIR domain-containing protein | - | - | |
B, D, E [auth F], H [auth T] | Piwi domain-containing protein | - | - | |
J [auth H], K [auth I], N [auth L], O [auth S] | RNA (5'-R(P*UP*GP*AP*GP*GP*UP*AP*GP*UP*AP*GP*GP*UP*UP*GP*UP*AP*UP*A)-3') | - | - | - |
I [auth E], L [auth J], M [auth K], P [auth U] | DNA (5'-D(P*TP*AP*TP*AP*CP*AP*AP*CP*CP*TP*AP*CP*TP*AP*CP*CP*TP*CP*A)-3') | - | - | - |
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
A, C, F [auth G], G [auth O] | IPR000157 | Toll/interleukin-1 receptor homology (TIR) domain | Domain |
A, C, F [auth G], G [auth O] | IPR035897 | Toll/interleukin-1 receptor homology (TIR) domain superfamily | Homologous Superfamily |
B, D, E [auth F], H [auth T] | IPR036397 | Ribonuclease H superfamily | Homologous Superfamily |
B, D, E [auth F], H [auth T] | IPR012337 | Ribonuclease H-like superfamily | Homologous Superfamily |