8BHV
DNA-PK XLF mediated dimer bound to PAXX
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
C [auth K] | SCOP2B Superfamily | XRCC4 C-terminal oligomerization domain-like | 8036636 | 3001502 | SCOP2B (2022-06-29) |
C [auth K] | SCOP2B Superfamily | XRCC4 N-terminal domain-like | 8036633 | 3001319 | SCOP2B (2022-06-29) |
D [auth L] | SCOP2B Superfamily | XRCC4 N-terminal domain-like | 8036633 | 3001319 | SCOP2B (2022-06-29) |
D [auth L] | SCOP2B Superfamily | XRCC4 C-terminal oligomerization domain-like | 8036636 | 3001502 | SCOP2B (2022-06-29) |
F [auth N] | SCOP2B Superfamily | XRCC4 C-terminal oligomerization domain-like | 8036636 | 3001502 | SCOP2B (2022-06-29) |
F [auth N] | SCOP2B Superfamily | XRCC4 N-terminal domain-like | 8036633 | 3001319 | SCOP2B (2022-06-29) |
G [auth O] | SCOP2B Superfamily | XRCC4 N-terminal domain-like | 8036633 | 3001319 | SCOP2B (2022-06-29) |
G [auth O] | SCOP2B Superfamily | XRCC4 C-terminal oligomerization domain-like | 8036636 | 3001502 | SCOP2B (2022-06-29) |
E [auth M] | SCOP2B Superfamily | DNA ligase IV Xrcc4-binding domain-like | 8095958 | 3002713 | SCOP2B (2022-06-29) |
H [auth P] | SCOP2B Superfamily | DNA ligase IV Xrcc4-binding domain-like | 8095958 | 3002713 | SCOP2B (2022-06-29) |
I [auth Q] | SCOP2B Superfamily | XRCC4 N-terminal domain-like | 8051827 | 3001319 | SCOP2B (2022-06-29) |
I [auth Q] | SCOP2B Superfamily | XRCC4 C-terminal oligomerization domain-like | 8051828 | 3001502 | SCOP2B (2022-06-29) |
J [auth R] | SCOP2B Superfamily | XRCC4 C-terminal oligomerization domain-like | 8051828 | 3001502 | SCOP2B (2022-06-29) |
J [auth R] | SCOP2B Superfamily | XRCC4 N-terminal domain-like | 8051827 | 3001319 | SCOP2B (2022-06-29) |
K [auth a] | SCOP2B Superfamily | vWA-like | 8035574 | 3000832 | SCOP2B (2022-06-29) |
K [auth a] | SCOP2B Superfamily | SPOC domain-like | 8035571 | 3000675 | SCOP2B (2022-06-29) |
N [auth h] | SCOP2B Superfamily | SPOC domain-like | 8035571 | 3000675 | SCOP2B (2022-06-29) |
N [auth h] | SCOP2B Superfamily | vWA-like | 8035574 | 3000832 | SCOP2B (2022-06-29) |
L [auth b] | SCOP2B Superfamily | SPOC domain-like | 8035577 | 3000675 | SCOP2B (2022-06-29) |
L [auth b] | SCOP2B Superfamily | C-terminal domain of Ku80 | 8041016 | 3001210 | SCOP2B (2022-06-29) |
L [auth b] | SCOP2B Superfamily | vWA-like | 8035579 | 3000832 | SCOP2B (2022-06-29) |
P [auth j] | SCOP2B Superfamily | C-terminal domain of Ku80 | 8041016 | 3001210 | SCOP2B (2022-06-29) |
P [auth j] | SCOP2B Superfamily | SPOC domain-like | 8035577 | 3000675 | SCOP2B (2022-06-29) |
P [auth j] | SCOP2B Superfamily | vWA-like | 8035579 | 3000832 | SCOP2B (2022-06-29) |
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
A, B [auth F] | PF02735 | Ku70/Ku80 beta-barrel domain (Ku) | Ku70/Ku80 beta-barrel domain | The Ku heterodimer (composed of Ku70 Swiss:P12956 and Ku80 Swiss:P13010) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the central DNA-bi ... | Domain |
A, B [auth F] | PF08163 | DNA-dependent protein kinase catalytic subunit, CC3 (DNAPKcs_CC3) | DNA-dependent protein kinase catalytic subunit, CC3 | - | Repeat |
A, B [auth F] | PF02260 | FATC domain (FATC) | FATC domain | - | Family |
A, B [auth F] | PF03730 | Ku70/Ku80 C-terminal arm (Ku_C) | Ku70/Ku80 C-terminal arm | - | Family |
A, B [auth F] | PF00454 | Phosphatidylinositol 3- and 4-kinase (PI3_PI4_kinase) | Phosphatidylinositol 3- and 4-kinase | - | Family |
A, B [auth F] | PF03731 | Ku70/Ku80 N-terminal alpha/beta domain (Ku_N) | Ku70/Ku80 N-terminal alpha/beta domain | The Ku heterodimer (composed of Ku70 Swiss:P12956 and Ku80 Swiss:P13010) contributes to genomic integrity through its ability to bind DNA double-strand breaks and facilitate repair by the non-homologous end-joining pathway. This is the amino terminal ... | Domain |
A, B [auth F] | PF19704 | DNA-PKcs, CC5 (DNAPKcs_CC5) | DNA-PKcs, CC5 | - | Repeat |
A, B [auth F] | PF20502 | DNA-dependent protein kinase catalytic subunit, CC1/2 (DNAPKcs_CC1-2) | DNA-dependent protein kinase catalytic subunit, CC1/2 | - | Repeat |
C [auth K], D [auth L], F [auth N], G [auth O] | PF06632 | XRCC4 N-terminal domain (XRCC4) | XRCC4 N-terminal domain | This family consists of several eukaryotic DNA double-strand break repair and V(D)J recombination protein XRCC4 sequences. In the non-homologous end joining pathway of DNA double-strand break repair, the ligation step is catalysed by a complex of XRC ... | Domain |
C [auth K], D [auth L], F [auth N], G [auth O] | PF21924 | XRCC4 coiled-coil (XRCC4_CC) | XRCC4 coiled-coil | - | Coiled-coil |
E [auth M], H [auth P] | PF11411 | DNA ligase IV (DNA_ligase_IV) | DNA ligase IV | - | Family |
E [auth M], H [auth P] | PF00533 | BRCA1 C Terminus (BRCT) domain (BRCT) | BRCA1 C Terminus (BRCT) domain | - | Family |
I [auth Q], J [auth R] | PF09302 | XLF N-terminal domain (XLF) | XLF N-terminal domain | XLF (also called Cernunnos) is Xrcc4-like-factor, and interacts with the XRCC4-DNA ligase IV complex to promote DNA non-homologous end-joining. It directly interacts with the XRCC4-Ligase IV complex and siRNA-mediated down-regulation of XLF in human ... | Domain |
I [auth Q], J [auth R] | PF21928 | XLF protein coiled-coil region (XLF_CC) | XLF protein coiled-coil region | - | Coiled-coil |