8ZJJ

Structure of DOCK5/ELMO1/Rac1 core (RhoG/DOCK5/ELMO1/Rac1 dataset, class 2)

External Resource: Annotation

Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, D	Engulfment and cell motility protein 1	SH3 domain binding protein binding binding protein domain specific binding	cellular response to stimulus regulation of biological process small GTPase-mediated signal transduction regulation of cellular process response to stimulus signaling Rac protein signal transduction biological regulation intracellular signal transduction cell communication intracellular signaling cassette cellular process signal transduction membrane organization cellular response to stimulus regulation of biological process small GTPase-mediated signal transduction regulation of cellular process response to stimulus signaling Rac protein signal transduction biological regulation intracellular signal transduction cell communication intracellular signaling cassette cellular process signal transduction membrane organization import into cell transport establishment of localization vesicle-mediated transport cellular component organization localization phagocytosis, engulfment membrane invagination phagocytosis cellular component organization or biogenesis endocytosis plasma membrane invagination apoptotic process cell death programmed cell death cell motility organelle organization actin cytoskeleton organization actin filament organization actin filament-based process supramolecular fiber organization cytoskeleton organization	membrane cellular anatomical entity intracellular anatomical structure cytoplasm cytosol cell periphery plasma membrane protein-containing complex guanyl-nucleotide exchange factor complex intracellular protein-containing complex
B, E	Dedicator of cytokinesis protein 5	small GTPase binding protein binding binding enzyme binding GTPase binding GTPase regulator activity enzyme regulator activity enzyme activator activity GTPase activator activity molecular function activator activity nucleoside-triphosphatase regulator activity molecular function regulator activity guanyl-nucleotide exchange factor activity	multicellular organismal process tissue remodeling bone remodeling vascular associated smooth muscle contraction system process regulation of vascular associated smooth muscle contraction regulation of system process negative regulation of biological process negative regulation of vasoconstriction negative regulation of muscle contraction circulatory system process smooth muscle contraction regulation of smooth muscle contraction regulation of multicellular organismal process multicellular organismal process tissue remodeling bone remodeling vascular associated smooth muscle contraction system process regulation of vascular associated smooth muscle contraction regulation of system process negative regulation of biological process negative regulation of vasoconstriction negative regulation of muscle contraction circulatory system process smooth muscle contraction regulation of smooth muscle contraction regulation of multicellular organismal process blood vessel diameter maintenance regulation of biological quality negative regulation of smooth muscle contraction blood circulation regulation of tube diameter regulation of biological process regulation of tube size biological regulation negative regulation of vascular associated smooth muscle contraction muscle contraction muscle system process regulation of muscle system process regulation of blood circulation regulation of muscle contraction vascular process in circulatory system regulation of vasoconstriction negative regulation of multicellular organismal process vasoconstriction regulation of anatomical structure size positive regulation of substrate adhesion-dependent cell spreading regulation of cellular process regulation of cell-substrate adhesion positive regulation of cell adhesion regulation of substrate adhesion-dependent cell spreading regulation of cell adhesion positive regulation of biological process cell-substrate adhesion cell adhesion positive regulation of cell-substrate adhesion substrate adhesion-dependent cell spreading cellular process positive regulation of cellular process cell migration cell motility regulation of vascular associated smooth muscle cell migration positive regulation of locomotion vascular associated smooth muscle cell migration regulation of cell motility regulation of smooth muscle cell migration positive regulation of smooth muscle cell migration positive regulation of cell migration smooth muscle cell migration muscle cell migration regulation of locomotion positive regulation of cell motility regulation of cell migration locomotion positive regulation of vascular associated smooth muscle cell migration podosome assembly organelle assembly protein-containing complex organization non-membrane-bounded organelle assembly cellular component organization cellular component biogenesis organelle organization cellular component assembly protein-containing complex assembly cellular component organization or biogenesis cellular response to stimulus small GTPase-mediated signal transduction response to stimulus signaling Rac protein signal transduction intracellular signal transduction cell communication intracellular signaling cassette signal transduction developmental process cellular developmental process myoblast fusion cell-cell fusion muscle cell differentiation myotube differentiation muscle structure development syncytium formation by plasma membrane fusion anatomical structure morphogenesis cell differentiation anatomical structure formation involved in morphogenesis anatomical structure development syncytium formation striated muscle cell differentiation positive regulation of epithelial cell migration tissue migration ameboidal-type cell migration epithelial cell migration regulation of epithelial cell migration epithelium migration	intracellular organelle intracellular anatomical structure podosome cytoskeleton organelle intracellular non-membrane-bounded organelle cellular anatomical entity actin cytoskeleton non-membrane-bounded organelle cytoplasm cytosol anchoring junction cell junction cell periphery intracellular organelle intracellular anatomical structure podosome cytoskeleton organelle intracellular non-membrane-bounded organelle cellular anatomical entity actin cytoskeleton non-membrane-bounded organelle cytoplasm cytosol anchoring junction cell junction cell periphery plasma membrane membrane cell projection
C, F	Ras-related C3 botulinum toxin substrate 1	thioesterase binding protein binding binding enzyme binding protein-containing complex binding pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity Rho GDP-dissociation inhibitor binding GDP-dissociation inhibitor binding thioesterase binding protein binding binding enzyme binding protein-containing complex binding pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity Rho GDP-dissociation inhibitor binding GDP-dissociation inhibitor binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding organic cyclic compound binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding kinase binding protein kinase binding G protein activity molecular function regulator activity	regulation of biological process regulation of cell motility regulation of cellular process regulation of leukocyte migration biological regulation neutrophil migration granulocyte migration leukocyte migration immune system process regulation of locomotion myeloid leukocyte migration regulation of cell migration cell migration cellular process regulation of biological process regulation of cell motility regulation of cellular process regulation of leukocyte migration biological regulation neutrophil migration granulocyte migration leukocyte migration immune system process regulation of locomotion myeloid leukocyte migration regulation of cell migration cell migration cellular process regulation of immune system process cell motility regulation of neutrophil migration locomotion lamellipodium assembly plasma membrane bounded cell projection organization cell projection organization plasma membrane bounded cell projection assembly cellular component organization cellular component biogenesis cellular component assembly lamellipodium organization cellular component organization or biogenesis cell projection assembly regulation of cell-substrate adhesion positive regulation of cell adhesion regulation of cell adhesion positive regulation of biological process cell-substrate adhesion cell adhesion positive regulation of cell-substrate adhesion positive regulation of cellular process regulation of cellular component size regulation of biological quality regulation of cell size regulation of anatomical structure size localization substrate adhesion-dependent cell spreading multicellular organismal process cellular biosynthetic process negative regulation of biological process negative regulation of cellular metabolic process cytokine production regulation of cytokine production negative regulation of cellular process regulation of multicellular organismal process negative regulation of macromolecule metabolic process regulation of biosynthetic process cellular metabolic process negative regulation of metabolic process regulation of cellular metabolic process negative regulation of cytokine production regulation of macromolecule metabolic process gene expression macromolecule biosynthetic process negative regulation of cellular biosynthetic process regulation of cellular biosynthetic process interleukin-23 production regulation of gene expression negative regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of interleukin-23 production negative regulation of multicellular organismal process regulation of metabolic process negative regulation of interleukin-23 production positive regulation of substrate adhesion-dependent cell spreading regulation of substrate adhesion-dependent cell spreading organelle organization actin cytoskeleton organization actin filament-based process cytoskeleton organization cellular response to stimulus cell surface receptor signaling pathway response to stimulus signaling cell surface receptor protein tyrosine kinase signaling pathway cell communication hepatocyte growth factor receptor signaling pathway signal transduction enzyme-linked receptor protein signaling pathway regulation of cellular component organization positive regulation of cellular component organization cell-substrate junction assembly positive regulation of cell-substrate junction organization cell junction assembly regulation of cell-substrate junction organization focal adhesion assembly positive regulation of focal adhesion assembly positive regulation of cellular component biogenesis positive regulation of cell-matrix adhesion regulation of cellular component biogenesis regulation of cell junction assembly positive regulation of cell junction assembly cell junction organization cell-matrix adhesion regulation of cell-matrix adhesion cell-substrate junction organization regulation of focal adhesion assembly regulation of cell-substrate junction assembly regulation of localization import into cell transport negative regulation of transport negative regulation of endocytosis vesicle-mediated transport regulation of endocytosis negative regulation of cellular component organization negative regulation of receptor-mediated endocytosis regulation of transport regulation of receptor-mediated endocytosis regulation of vesicle-mediated transport establishment of localization endocytosis receptor-mediated endocytosis Wnt signaling pathway, planar cell polarity pathway non-canonical Wnt signaling pathway Wnt signaling pathway small GTPase-mediated signal transduction Rac protein signal transduction intracellular signal transduction intracellular signaling cassette cell chemotaxis chemotaxis response to external stimulus cellular response to chemical stimulus taxis response to chemical response to stress response to wounding establishment or maintenance of cell polarity ruffle organization positive regulation of organelle organization regulation of cytoskeleton organization regulation of microtubule polymerization or depolymerization microtubule cytoskeleton organization regulation of protein-containing complex assembly positive regulation of protein-containing complex assembly microtubule polymerization or depolymerization positive regulation of protein polymerization protein-containing complex assembly protein polymerization positive regulation of microtubule polymerization or depolymerization protein-containing complex organization positive regulation of cytoskeleton organization regulation of microtubule-based process microtubule polymerization positive regulation of supramolecular fiber organization regulation of organelle organization positive regulation of microtubule polymerization regulation of protein polymerization regulation of microtubule polymerization regulation of supramolecular fiber organization microtubule-based process supramolecular fiber organization regulation of microtubule cytoskeleton organization actin filament organization sphingolipid mediated signaling pathway sphingosine-1-phosphate receptor signaling pathway G protein-coupled receptor signaling pathway negative regulation of locomotion regulation of fibroblast migration fibroblast migration negative regulation of fibroblast migration ameboidal-type cell migration negative regulation of cell motility negative regulation of cell migration positive regulation of locomotion endothelial cell migration positive regulation of cell migration positive regulation of epithelial cell migration tissue migration positive regulation of cell motility regulation of endothelial cell migration epithelial cell migration regulation of epithelial cell migration epithelium migration positive regulation of endothelial cell migration regulation of actin filament-based process regulation of actin filament bundle assembly actin filament bundle organization stress fiber assembly regulation of actin filament organization actomyosin structure organization regulation of stress fiber assembly contractile actin filament bundle assembly regulation of actomyosin structure organization actin filament bundle assembly regulation of actin cytoskeleton organization actin polymerization or depolymerization actin filament polymerization axonogenesis cellular developmental process motor neuron axon guidance plasma membrane bounded cell projection morphogenesis cell development neuron projection development cell morphogenesis neurogenesis multicellular organism development cell projection morphogenesis neuron differentiation neuron projection morphogenesis cell differentiation anatomical structure development system development developmental process axon guidance nervous system development axon development cell morphogenesis involved in neuron differentiation generation of neurons anatomical structure morphogenesis neuron projection guidance neuron development positive regulation of cell communication positive regulation of signal transduction regulation of small GTPase mediated signal transduction regulation of signal transduction Rho protein signal transduction positive regulation of response to stimulus regulation of intracellular signal transduction regulation of signaling positive regulation of intracellular signal transduction regulation of Rho protein signal transduction positive regulation of Rho protein signal transduction regulation of response to stimulus regulation of cell communication positive regulation of small GTPase mediated signal transduction positive regulation of signaling respiratory burst regulation of respiratory burst positive regulation of chemotaxis positive regulation of neutrophil chemotaxis positive regulation of immune system process regulation of leukocyte chemotaxis positive regulation of leukocyte chemotaxis positive regulation of granulocyte chemotaxis regulation of neutrophil chemotaxis regulation of response to external stimulus neutrophil chemotaxis regulation of granulocyte chemotaxis positive regulation of response to external stimulus positive regulation of leukocyte migration positive regulation of neutrophil migration regulation of chemotaxis granulocyte chemotaxis leukocyte chemotaxis reactive oxygen species metabolic process hydrogen peroxide metabolic process regulation of hydrogen peroxide metabolic process regulation of reactive oxygen species metabolic process regulation of nitric oxide biosynthetic process reactive nitrogen species metabolic process nitric oxide metabolic process nitric oxide biosynthetic process regulation of nitric oxide metabolic process regulation of developmental process regulation of cell shape regulation of cell morphogenesis regulation of anatomical structure morphogenesis cortical cytoskeleton organization semaphorin-plexin signaling pathway ruffle assembly positive regulation of phosphorylation regulation of protein modification process regulation of protein phosphorylation positive regulation of protein metabolic process positive regulation of cellular metabolic process positive regulation of phosphate metabolic process regulation of primary metabolic process positive regulation of metabolic process positive regulation of protein modification process regulation of phosphate metabolic process phosphate-containing compound metabolic process positive regulation of macromolecule metabolic process protein metabolic process positive regulation of protein phosphorylation phosphorus metabolic process protein modification process organonitrogen compound metabolic process protein phosphorylation positive regulation of phosphorus metabolic process phosphorylation regulation of protein metabolic process primary metabolic process macromolecule modification regulation of phosphorus metabolic process regulation of phosphorylation defense response inflammatory response cellular localization localization within membrane neuron migration regulation of cell projection organization regulation of cell projection assembly regulation of plasma membrane bounded cell projection assembly regulation of lamellipodium assembly regulation of lamellipodium organization regulation of plasma membrane bounded cell projection organization membrane organization engulfment of apoptotic cell phagocytosis, engulfment membrane invagination phagocytosis apoptotic cell clearance plasma membrane invagination positive regulation of cell projection organization positive regulation of lamellipodium assembly positive regulation of lamellipodium organization positive regulation of plasma membrane bounded cell projection assembly positive regulation of actin filament bundle assembly positive regulation of stress fiber assembly	cell projection cell leading edge cellular anatomical entity plasma membrane bounded cell projection lamellipodium membrane extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space vesicle cell projection cell leading edge cellular anatomical entity plasma membrane bounded cell projection lamellipodium membrane extracellular exosome membrane-bounded organelle extracellular vesicle extracellular organelle extracellular region organelle extracellular space vesicle extracellular membrane-bounded organelle intracellular anatomical structure cytoplasm cytosol synapse cell junction glutamatergic synapse Golgi apparatus subcompartment Golgi apparatus organelle subcompartment intracellular membrane-bounded organelle endomembrane system intracellular organelle trans-Golgi network cytoskeleton intracellular non-membrane-bounded organelle non-membrane-bounded organelle neuron spine neuron projection dendritic spine somatodendritic compartment postsynapse dendrite dendritic tree anchoring junction focal adhesion cell-substrate junction pigment granule intracellular vesicle melanosome cytoplasmic vesicle cell periphery cell cortex ruffle plasma membrane leading edge membrane ruffle membrane plasma membrane region cell projection membrane protein-containing complex catalytic complex plasma membrane protein complex NADPH oxidase complex membrane protein complex oxidoreductase complex endoplasmic reticulum subcompartment nuclear outer membrane-endoplasmic reticulum membrane network endoplasmic reticulum organelle membrane endoplasmic reticulum membrane cytoplasmic ribonucleoprotein granule supramolecular complex ribonucleoprotein granule endosome membrane endosome recycling endosome cytoplasmic vesicle membrane bounding membrane of organelle recycling endosome membrane vesicle membrane secretory granule secretory vesicle secretory granule membrane ficolin-1-rich granule membrane ficolin-1-rich granule tertiary granule nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, D	IPR001849	Pleckstrin homology domain	Domain
A, D	IPR006816	ELMO domain	Domain
A, D	IPR016024	Armadillo-type fold	Homologous Superfamily
A, D	IPR024574	ELMO, armadillo-like helical domain	Domain
A, D	IPR011989	Armadillo-like helical	Homologous Superfamily
A, D	IPR011993	PH-like domain superfamily	Homologous Superfamily
B, E	IPR043162	Dedicator of cytokinesis, C-terminal, lobe C	Homologous Superfamily
B, E	IPR016024	Armadillo-type fold	Homologous Superfamily
B, E	IPR042455	Dedicator of cytokinesis, N-terminal, subdomain 1	Homologous Superfamily
B, E	IPR026791	Dedicator of cytokinesis	Family
B, E	IPR046773	DOCKER, Lobe C	Domain
B, E	IPR036028	SH3-like domain superfamily	Homologous Superfamily
B, E	IPR046770	DOCKER, Lobe B	Domain
B, E	IPR027357	DOCKER domain	Domain
B, E	IPR046769	DOCKER, Lobe A	Domain
B, E	IPR032376	Dedicator of cytokinesis, N-terminal domain	Domain
B, E	IPR047025	Dedicator of cytokinesis protein 1/5, SH3 domain	Domain
B, E	IPR030717	Dedicator of cytokinesis protein 5, DHR2 domain	Domain
B, E	IPR001452	SH3 domain	Domain
B, E	IPR035892	C2 domain superfamily	Homologous Superfamily
B, E	IPR027007	C2 DOCK-type domain	Domain
B, E	IPR043161	Dedicator of cytokinesis, C-terminal, lobe A	Homologous Superfamily
C, F	IPR003578	Small GTPase Rho	Family
C, F	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
C, F	IPR001806	Small GTPase	Family
C, F	IPR005225	Small GTP-binding protein domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, D	Pharos: Q92556	Stevens-Johnson syndrome esophageal adenocarcinoma primary biliary cholangitis psoriasis Nodular glomerulosclerosis pancreatic intraductal papillary-mucinous neoplasm pilocytic astrocytoma toxic epidermal necrolysis Alzheimer disease celiac disease Hashimoto thyroiditis lung adenocarcinoma malignant ependymoma medulloblastoma non-small cell lung carcinoma Stevens-Johnson syndrome esophageal adenocarcinoma primary biliary cholangitis psoriasis Nodular glomerulosclerosis pancreatic intraductal papillary-mucinous neoplasm pilocytic astrocytoma toxic epidermal necrolysis Alzheimer disease celiac disease Hashimoto thyroiditis lung adenocarcinoma malignant ependymoma medulloblastoma non-small cell lung carcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia ulcerative colitis attention deficit hyperactivity disorder, inattentive type diabetic kidney disease interstitial cystitis lung cancer malignant glioma ovarian cancer Pick disease subependymal giant cell astrocytoma atypical teratoid rhabdoid tumor glioblastoma large cell medulloblastoma lung carcinoma malignant mesothelioma
B, E	Pharos: Q9H7D0	astrocytic tumor ductal breast carcinoma in situ lung cancer medulloblastoma osteosarcoma pancreatic intraductal papillary-mucinous carcinoma primitive neuroectodermal tumor atypical teratoid rhabdoid tumor heart disease malignant mesothelioma non-small cell lung carcinoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm progressive supranuclear palsy breast cancer astrocytic tumor ductal breast carcinoma in situ lung cancer medulloblastoma osteosarcoma pancreatic intraductal papillary-mucinous carcinoma primitive neuroectodermal tumor atypical teratoid rhabdoid tumor heart disease malignant mesothelioma non-small cell lung carcinoma ovarian cancer pancreatic intraductal papillary-mucinous neoplasm progressive supranuclear palsy breast cancer large cell medulloblastoma malignant pancreatic neoplasm oligodendroglioma pancreatic ductal adenocarcinoma pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia
C, F	Pharos: P63000	dilated cardiomyopathy melanoma Cardiotoxicity cutaneous melanoma congestive heart failure diabetes mellitus liver disease malignant glioma osteosarcoma plasma cell myeloma urinary bladder cancer heart disease hepatocellular carcinoma medulloblastoma ovarian cancer dilated cardiomyopathy melanoma Cardiotoxicity cutaneous melanoma congestive heart failure diabetes mellitus liver disease malignant glioma osteosarcoma plasma cell myeloma urinary bladder cancer heart disease hepatocellular carcinoma medulloblastoma ovarian cancer Sjogren syndrome depressive disorder dilated cardiomyopathy 1A heart failure intellectual disability lymphoplasmacytic lymphoma microcephaly pancreatic intraductal papillary-mucinous neoplasm intellectual disability, autosomal dominant 48

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.

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8ZJJ

Structure of DOCK5/ELMO1/Rac1 core (RhoG/DOCK5/ELMO1/Rac1 dataset, class 2)

External Resource: Annotation

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

InterPro: Protein Family Classification InterPro Database Homepage

Pharos: Disease Associations Pharos Homepage Annotation