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 8Z5U | pdb_00008z5u

Cryo-EM structure of the rod-export apparatus with partial hook within the polar flagellar motor


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
WB [auth l]PKD_channele8z5ul1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PKD_channelECOD (v295.2)
VB [auth k]PKD_channele8z5uk1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PKD_channelECOD (v295.2)
UB [auth j]PKD_channele8z5uj1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PKD_channelECOD (v295.2)
TB [auth i]PKD_channele8z5ui1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PKD_channelECOD (v295.2)
SB [auth h]PKD_channele8z5uh1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PKD_channelECOD (v295.2)
RB [auth g]PKD_channele8z5ug1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PKD_channelECOD (v295.2)
QB [auth f]PKD_channele8z5uf1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PKD_channelECOD (v295.2)
PB [auth e]PKD_channele8z5ue1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PKD_channelECOD (v295.2)
OB [auth d]PKD_channele8z5ud1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PKD_channelECOD (v295.2)
NB [auth c]PKD_channele8z5uc1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PKD_channelECOD (v295.2)
MB [auth b]PKD_channele8z5ub1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PKD_channelECOD (v295.2)
ZA [auth Aa]PKD_channele8z5uAa1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PKD_channelECOD (v295.2)
YA [auth AZ]PKD_channele8z5uAZ1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PKD_channelECOD (v295.2)
XA [auth AY]PKD_channele8z5uAY1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PKD_channelECOD (v295.2)
WA [auth AX]PKD_channele8z5uAX1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PKD_channelECOD (v295.2)
W [auth A]PKD_channele8z5uA1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PKD_channelECOD (v295.2)
VA [auth AW]PKD_channele8z5uAW1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PKD_channelECOD (v295.2)
UA [auth AV]PKD_channele8z5uAV1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PKD_channelECOD (v295.2)
TA [auth AU]PKD_channele8z5uAU1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PKD_channelECOD (v295.2)
SA [auth AT]PKD_channele8z5uAT1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PKD_channelECOD (v295.2)
RA [auth AS]PKD_channele8z5uAS1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PKD_channelECOD (v295.2)
QA [auth AR]PKD_channele8z5uAR1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PKD_channelECOD (v295.2)
PA [auth AQ]PKD_channele8z5uAQ1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PKD_channelECOD (v295.2)
OA [auth AP]PKD_channele8z5uAP1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PKD_channelECOD (v295.2)
NA [auth C]PKD_channele8z5uC1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PKD_channelECOD (v295.2)
MA [auth B]PKD_channele8z5uB1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PKD_channelECOD (v295.2)
LB [auth a]Integrin_A_Ig_2e8z5ua1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Integrin_A_Ig_2ECOD (v295.2)
KB [auth Z]PKD_channele8z5uZ1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PKD_channelECOD (v295.2)
JB [auth Y]PKD_channele8z5uY1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PKD_channelECOD (v295.2)
IB [auth X]PKD_channele8z5uX1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PKD_channelECOD (v295.2)
HB [auth W]PKD_channele8z5uW1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PKD_channelECOD (v295.2)
GB [auth V]PKD_channele8z5uV1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PKD_channelECOD (v295.2)
FB [auth U]PKD_channele8z5uU1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PKD_channelECOD (v295.2)
EB [auth T]PKD_channele8z5uT1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PKD_channelECOD (v295.2)
DB [auth S]PKD_channele8z5uS1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PKD_channelECOD (v295.2)
CB [auth R]PKD_channele8z5uR1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PKD_channelECOD (v295.2)
BB [auth Q]PKD_channele8z5uQ1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PKD_channelECOD (v295.2)
AB [auth P]PKD_channele8z5uP1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PKD_channelECOD (v295.2)
ZB [auth o]PKD_channele8z5uo1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PKD_channelECOD (v295.2)
YB [auth n]PKD_channele8z5un1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PKD_channelECOD (v295.2)
XB [auth m]PKD_channele8z5um1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PKD_channelECOD (v295.2)
BC [auth q]PKD_channele8z5uq1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PKD_channelECOD (v295.2)
AC [auth p]PKD_channele8z5up1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PKD_channelECOD (v295.2)
L [auth O]PKD_channele8z5uO1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PKD_channelECOD (v295.2)
K [auth N]PKD_channele8z5uN1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PKD_channelECOD (v295.2)
J [auth M]PKD_channele8z5uM1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PKD_channelECOD (v295.2)
I [auth L]PKD_channele8z5uL1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PKD_channelECOD (v295.2)
H [auth K]PKD_channele8z5uK1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PKD_channelECOD (v295.2)
G [auth J]PKD_channele8z5uJ1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PKD_channelECOD (v295.2)
F [auth I]PKD_channele8z5uI1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PKD_channelECOD (v295.2)
E [auth H]PKD_channele8z5uH1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PKD_channelECOD (v295.2)
D [auth G]PKD_channele8z5uG1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PKD_channelECOD (v295.2)
C [auth F]PKD_channele8z5uF1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PKD_channelECOD (v295.2)
B [auth E]PKD_channele8z5uE1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: PKD_channelECOD (v295.2)
A [auth D]Integrin_A_Ig_2e8z5uD1 A: alpha arraysX: Hypothetical protein YqbG-likeH: Hypothetical protein YqbG-likeT: alpha/beta-HydrolasesF: Integrin_A_Ig_2ECOD (v295.2)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
Flagellar basal-body rod protein FlgC-
MB [auth b],
NB [auth c],
OB [auth d],
PB [auth e],
QB [auth f]
Flagellar basal body rod protein FlgB-
Flagellar M-ring protein
Flagellar basal-body rod protein FlgG-
U [auth 8]Flagellar biosynthetic protein FliR-
Q [auth 4],
R [auth 5],
S [auth 6],
T [auth 7]
Flagellar biosynthetic protein FliQ---
JC [auth y],
KC [auth z],
N [auth 1],
O [auth 2],
P [auth 3]
Flagellar biosynthetic protein FliP---
M [auth 0],
V [auth 9]
Leucine-rich repeat protein---
IC [auth x]Flagellar biosynthetic protein FlhB---
Flagellar hook-basal body complex protein FliE---
AC [auth p],
BC [auth q],
XB [auth m],
YB [auth n],
ZB [auth o]
Flagellar basal-body rod protein FlgF-
Flagellar hook protein FlgE---

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR019776Flagellar basal body rod protein, conserved siteConserved Site
IPR006299Flagellar basal-body rod protein FlgCFamily
IPR010930Flagellar basal-body/hook protein, C-terminal domainDomain
IPR001444Flagellar basal body rod protein, N-terminalDomain
MB [auth b],
NB [auth c],
OB [auth d],
PB [auth e],
QB [auth f]
IPR006300Flagellar basal-body rod protein FlgBFamily
IPR006182Flagellar M-ring, N-terminalDomain
IPR045851AMP-binding enzyme domain superfamilyHomologous Superfamily
IPR013556Flagellar M-ring C-terminalDomain
IPR043427Lipoprotein YscJ/Flagellar M-ring proteinFamily
IPR000067Flagellar M-ring protein FliFFamily
IPR063443FliF, N-terminal domainDomain
IPR019776Flagellar basal body rod protein, conserved siteConserved Site
IPR020013Flagellar hook-basal body protein, FlgE/F/GFamily
IPR010930Flagellar basal-body/hook protein, C-terminal domainDomain
IPR012834Flagellar basal-body rod FlgGFamily
IPR053967Flagellar hook protein FlgE/F/G-like, D1 domainDomain
IPR001444Flagellar basal body rod protein, N-terminalDomain
IPR037925Flagellar hook-basal body protein, FlgE/F/G-likeHomologous Superfamily
U [auth 8]IPR002010Type III secretion system inner membrane R proteinFamily
U [auth 8]IPR006303Flagellar biosynthesis protein FliRFamily
AC [auth p],
BC [auth q],
XB [auth m],
YB [auth n],
ZB [auth o]
IPR020013Flagellar hook-basal body protein, FlgE/F/GFamily
AC [auth p],
BC [auth q],
XB [auth m],
YB [auth n],
ZB [auth o]
IPR012836Flagellar basal-body rod FlgFFamily
AC [auth p],
BC [auth q],
XB [auth m],
YB [auth n],
ZB [auth o]
IPR010930Flagellar basal-body/hook protein, C-terminal domainDomain
AC [auth p],
BC [auth q],
XB [auth m],
YB [auth n],
ZB [auth o]
IPR053967Flagellar hook protein FlgE/F/G-like, D1 domainDomain
AC [auth p],
BC [auth q],
XB [auth m],
YB [auth n],
ZB [auth o]
IPR001444Flagellar basal body rod protein, N-terminalDomain
AC [auth p],
BC [auth q],
XB [auth m],
YB [auth n],
ZB [auth o]
IPR037925Flagellar hook-basal body protein, FlgE/F/G-likeHomologous Superfamily